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Journal of Structural Biology (78)
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Abendroth, J., Mitchell, D. D., Korotkov, K. V., Johnson, T. L., Kreger, A., Sandkvist, M., & Hol, W. G. J. (2009). The three-dimensional structure of the cytoplasmic domains of EpsF from the type 2 secretion system of Vibrio cholerae. Journal of Structural Biology, 166(3), 303–315.

Authors 7
  1. Jan Abendroth (first)
  2. Daniel D. Mitchell (additional)
  3. Konstantin V. Korotkov (additional)
  4. Tanya L. Johnson (additional)
  5. Allison Kreger (additional)
  6. Maria Sandkvist (additional)
  7. Wim G.J. Hol (additional)
References 83 Referenced 48
  1. 10.1016/j.jmb.2004.09.062 / J. Mol. Biol. / The structure of the cytoplasmic domain of EpsL, an inner membrane component of the type II secretion system of Vibrio cholerae: an unusual member of the actin-like ATPase superfamily by Abendroth (2004)
  2. 10.1016/j.jmb.2004.01.064 / J. Mol. Biol. / The crystal structure of the periplasmic domain of the type II secretion system protein EpsM from Vibrio cholerae: the simplest version of the ferredoxin fold by Abendroth (2004)
  3. 10.1016/j.jmb.2005.02.061 / J. Mol. Biol. / The X-ray structure of the type II secretion system complex formed by the N-terminal domain of EpsE and the cytoplasmic domain of EpsL of Vibrio cholerae by Abendroth (2005)
  4. 10.1073/pnas.93.18.9420 / Proc. Natl. Acad. Sci. USA / The structure of bovine F1-ATPase complexed with the peptide antibiotic efrapeptin by Abrahams (1996)
  5. 10.1099/mic.0.2006/002840-0 / Microbiology / Interaction domains in the Pseudomonas aeruginosa type II secretory apparatus component XcpS (GspF) by Arts (2007)
  6. 10.1107/S0907444994003112 / Acta Crystallogr. D Biol. Crystallogr. / The CCP4 suite – programs for protein crystallography by Bailey (1994)
  7. 10.1111/j.1365-2958.1992.tb01550.x / Mol. Microbiol. / Protein secretion in Pseudomonas aeruginosa: characterization of seven xcp genes and processing of secretory apparatus components by prepilin peptidase by Bally (1992)
  8. 10.1128/JB.183.15.4435-4450.2001 / J. Bacteriol. / Novel topology of BfpE, a cytoplasmic membrane protein required for type IV fimbrial biogenesis in enteropathogenic Escherichia coli by Blank (2001)
  9. 10.1111/j.1365-2958.1994.tb00335.x / Mol. Microbiol. / Periplasmic disulphide bond formation is essential for cellulase secretion by the plant pathogen Erwinia chrysanthemi by Bortoli-German (1994)
  10. 10.1006/jmbi.2001.4594 / J. Mol. Biol. / The PDZ domain of OutC and the N-terminal region of OutD determine the secretion specificity of the type II out pathway of Erwinia chrysanthemi by Bouley (2001)
  11. 10.1107/S0907444903017694 / Acta Crystallogr. D Biol. Crystallogr. / Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0 by Bricogne (2003)
  12. 10.1111/j.1365-2958.2005.04703.x / Mol. Microbiol. / Weapons of mass retraction by Burrows (2005)
  13. 10.1038/sj.emboj.7601481 / EMBO J. / Synergistic stimulation of EpsE ATP hydrolysis by EpsL and acidic phospholipids by Camberg (2007)
  14. 10.1111/j.1365-2958.2006.05341.x / Mol. Microbiol. / A systematic genetic analysis in Neisseria meningitidis defines the Pil proteins required for assembly, functionality, stabilization and export of type IV pili by Carbonnelle (2006)
  15. 10.1016/j.tim.2005.09.005 / Trends Microbiol. / Type II secretion: a protein secretion system for all seasons by Cianciotto (2005)
  16. 10.1128/JB.00648-07 / J. Bacteriol. / Purification and 3-D electron microscopy structure of the Neisseria meningitidis type IV pilus biogenesis protein PilG by Collins (2007)
  17. 10.1016/S0079-6107(99)00008-5 / Prog. Biophys. Mol. Biol. / Density modification for macromolecular phase improvement by Cowtan (1999)
  18. 10.1016/j.sbi.2007.12.009 / Curr. Opin. Struct. Biol. / Type IV pili: paradoxes in form and function by Craig (2008)
  19. 10.1038/nrmicro885 / Nat. Rev. Microbiol. / Type IV pilus structure and bacterial pathogenicity by Craig (2004)
  20. 10.1111/j.1365-2958.2003.03963.x / Mol. Microbiol. / The inner membrane subassembly of the enteropathogenic Escherichia coli bundle-forming pilus machine by Crowther (2004)
  21. 10.1002/j.1460-2075.1987.tb02679.x / EMBO J. / Cloning and expression in Escherichia coli of the Klebsiella pneumoniae genes for production, surface localization and secretion of the lipoprotein pullulanase by d’Enfert (1987)
  22. 10.1107/S0907444999016352 / Acta Crystallogr. D Biol. Crystallogr. / Novel approach to phasing proteins: derivatization by short cryo-soaking with halides by Dauter (2000)
  23. 10.1006/jmbi.1999.2743 / J. Mol. Biol. / Can anomalous signal of sulfur become a tool for solving protein crystal structures? by Dauter (1999)
  24. DeLano, W.L., 2002. The PyMol molecular graphics system. <http://www.pymol.org>.
  25. 10.1107/S0907444904019158 / Acta Crystallogr. D Biol. Crystallogr. / Coot: model-building tools for molecular graphics by Emsley (2004)
  26. 10.1111/j.1462-2920.2007.01545.x / Environ. Microbiol. / Ecology of type II secretion in marine gammaproteobacteria by Evans (2008)
  27. 10.1128/JB.182.14.4068-4076.2000 / J. Bacteriol. / Green fluorescent protein functions as a reporter for protein localization in Escherichia coli by Feilmeier (2000)
  28. 10.1016/j.bbamcr.2004.05.003 / Biochim. Biophys. Acta / The underlying mechanisms of type II protein secretion by Filloux (2004)
  29. 10.1093/bioinformatics/15.4.305 / Bioinformatics / ESPript: analysis of multiple sequence alignments in PostScript by Gouet (1999)
  30. {'key': '10.1016/j.jsb.2009.03.009_bib30', 'first-page': '192', 'article-title': 'Type IV pilin structures: insights on shared architecture, fiber assembly, receptor binding and type II secretion', 'volume': '11', 'author': 'Hansen', 'year': '2006', 'journal-title': 'J. Mol. Microbiol. Biotechnol.'} / J. Mol. Microbiol. Biotechnol. / Type IV pilin structures: insights on shared architecture, fiber assembly, receptor binding and type II secretion by Hansen (2006)
  31. 10.1111/j.1365-2958.1995.mmi_17061035.x / Mol. Microbiol. / Vibrio spp. secrete proaerolysin as a folded dimer without the need for disulphide bond formation by Hardie (1995)
  32. 10.1107/S0907444906014594 / Acta Crystallogr. D Biol. Crystallogr. / Small revisions to predicted distances around metal sites in proteins by Harding (2006)
  33. 10.1073/pnas.84.21.7418 / Proc. Natl. Acad. Sci. USA / Conformation of protein secreted across bacterial outer membranes: a study of enterotoxin translocation from Vibrio cholerae by Hirst (1987)
  34. 10.1111/j.1365-2958.1993.tb01949.x / Mol. Microbiol. / Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes by Hobbs (1993)
  35. 10.1006/jmbi.1993.1489 / J. Mol. Biol. / Protein structure comparison by alignment of distance matrices by Holm (1993)
  36. 10.1128/JB.01256-07 / J. Bacteriol. / Mapping critical interactive sites within the periplasmic domain of the Vibrio cholerae type II secretion protein EpsM by Johnson (2007)
  37. 10.1111/j.1574-6968.2006.00102.x / FEMS Microbiol. Lett. / Type II secretion: from structure to function by Johnson (2006)
  38. 10.1073/pnas.93.1.13 / Proc. Natl. Acad. Sci. USA / Principles of protein–protein interactions by Jones (1996)
  39. 10.1038/nature04249 / Nature / A colonization factor links Vibrio cholerae environmental survival and human infection by Kirn (2005)
  40. 10.1016/j.jmb.2006.08.037 / J. Mol. Biol. / Structural and functional studies of EpsC, a crucial component of the type 2 secretion system from Vibrio cholerae by Korotkov (2006)
  41. 10.1038/nsmb.1426 / Nat. Struct. Mol. Biol. / Structure of the GspK–GspI–GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system by Korotkov (2008)
  42. 10.1016/j.str.2008.11.011 / Structure / Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody by Korotkov (2009)
  43. 10.1107/S0907444904026460 / Acta Crystallogr. D Biol. Crystallogr. / Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions by Krissinel (2004)
  44. 10.1006/jmbi.2000.4315 / J. Mol. Biol. / Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes by Krogh (2001)
  45. 10.1093/nar/gki370 / Nucleic Acids Res. / ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures by Landau (2005)
  46. 10.1110/ps.9.11.2085 / Protein Sci. / Structure of the Ca2+-regulated photoprotein obelin at 1.7Å resolution determined directly from its sulfur substructure by Liu (2000)
  47. 10.1146/annurev.micro.56.012302.160938 / Annu. Rev. Microbiol. / Type IV pili and twitching motility by Mattick (2002)
  48. 10.1016/0959-440X(95)80071-9 / Curr. Opin. Struct. Biol. / AB5 toxins by Merritt (1995)
  49. 10.1107/S0907444996012255 / Acta Crystallogr. D Biol. Crystallogr. / Refinement of macromolecular structures by the maximum-likelihood method by Murshudov (1997)
  50. 10.1006/jmbi.2000.4042 / J. Mol. Biol. / T-Coffee: a novel method for fast and accurate multiple sequence alignment by Notredame (2000)
  51. {'key': '10.1016/j.jsb.2009.03.009_bib51', 'first-page': '52', 'article-title': 'Pulling together with type IV pili', 'volume': '7', 'author': 'Nudleman', 'year': '2004', 'journal-title': 'J. Mol. Microbiol. Biotechnol.'} / J. Mol. Microbiol. Biotechnol. / Pulling together with type IV pili by Nudleman (2004)
  52. 10.1016/S0962-8924(99)01634-7 / Trends Cell Biol. / Bacterial type II protein export and pilus biogenesis: more than just homologies? by Nunn (1999)
  53. 10.1021/bi0360152 / Biochemistry / Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism by O’Neal (2004)
  54. 10.1107/S0907444906005270 / Acta Crystallogr. D Biol. Crystallogr. / Optimal description of a protein structure in terms of multiple groups undergoing TLS motion by Painter (2006)
  55. 10.1099/mic.0.26364-0 / Microbiology / Type II protein secretion and its relationship to bacterial type IV pili and archaeal flagella by Peabody (2003)
  56. 10.1038/8263 / Nat. Struct. Biol. / Automated protein model building combined with iterative structure refinement by Perrakis (1999)
  57. 10.1107/S090744499900935X / Acta Crystallogr. D Biol. Crystallogr. / The finer things in X-ray diffraction data collection by Pflugrath (1999)
  58. 10.1073/pnas.89.24.12058 / Proc. Natl. Acad. Sci. USA / Translocation of a folded protein across the outer membrane in Escherichia coli by Pugsley (1992)
  59. 10.1128/mr.57.1.50-108.1993 / Microbiol. Rev. / The complete general secretory pathway in gram-negative bacteria by Pugsley (1993)
  60. 10.1093/embo-reports/kve042 / EMBO Rep. / An inner membrane platform in the type II secretion machinery of Gram-negative bacteria by Py (2001)
  61. 10.1016/j.jmb.2003.07.015 / J. Mol. Biol. / Crystal structure of the extracellular protein secretion NTPase EpsE of Vibrio cholerae by Robien (2003)
  62. 10.1046/j.1365-2958.2001.02403.x / Mol. Microbiol. / Biology of type II secretion by Sandkvist (2001)
  63. 10.1128/IAI.69.6.3523-3535.2001 / Infect. Immun. / Type II secretion and pathogenesis by Sandkvist (2001)
  64. 10.1002/j.1460-2075.1995.tb07155.x / EMBO J. / Interaction between the autokinase EpsE and EpsL in the cytoplasmic membrane is required for extracellular secretion in Vibrio cholerae by Sandkvist (1995)
  65. 10.1128/jb.179.22.6994-7003.1997 / J. Bacteriol. / General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae by Sandkvist (1997)
  66. 10.1093/emboj/19.10.2221 / EMBO J. / Pilus formation and protein secretion by the same machinery in Escherichia coli by Sauvonnet (2000)
  67. 10.1111/j.1574-6968.1997.tb10299.x / FEMS Microbiol. Lett. / A gene cluster closely related to type II secretion pathway operons of gram-negative bacteria is located on the large plasmid of enterohemorrhagic Escherichia coli O157 strains by Schmidt (1997)
  68. 10.1107/S0907444902011678 / Acta Crystallogr. D Biol. Crystallogr. / Substructure solution with SHELXD by Schneider (2002)
  69. 10.1128/JB.00583-07 / J. Bacteriol. / Compromised outer membrane integrity in Vibrio cholerae type II secretion mutants by Sikora (2007)
  70. 10.1038/351371a0 / Nature / Crystal structure of a cholera toxin-related heat-labile enterotoxin from E. coli by Sixma (1991)
  71. 10.1128/JB.186.12.3712-3720.2004 / J. Bacteriol. / The type II protein secretion system of Legionella pneumophila promotes growth at low temperatures by Söderberg (2004)
  72. 10.1073/pnas.092152899 / Proc. Natl. Acad. Sci. USA / Identification of a protein secretory pathway for the secretion of heat-labile enterotoxin by an enterotoxigenic strain of Escherichia coli by Tauschek (2002)
  73. 10.1099/00221287-143-3-713 / Microbiology / The general secretion pathway of Erwinia carotovora subsp. carotovora: analysis of the membrane topology of OutC and OutF by Thomas (1997)
  74. Uweh, O., 2006. Klebsiella infections. <http://www.emedicine.com/MED/topic1237.htm>.
  75. 10.1006/jmbi.1993.1012 / J. Mol. Biol. / Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin by van Duyne (1993)
  76. 10.1093/bioinformatics/bth195 / Bioinformatics / The DISOPRED server for the prediction of protein disorder by Ward (2004)
  77. 10.1016/S0969-2126(01)00647-5 / Structure / Soft X-rays, high redundancy, and proper scaling: a new procedure for automated protein structure determination via SAS by Weiss (2001)
  78. 10.1107/S0907444901003572 / Acta Crystallogr. D Biol. Crystallogr. / On the routine use of soft X-rays in macromolecular crystallography by Weiss (2001)
  79. 10.1107/S0907444905010644 / Acta Crystallogr. D Biol. Crystallogr. / Away from the edge II: in-house Se-SAS phasing with chromium radiation by Xu (2005)
  80. 10.1016/j.jmb.2007.08.041 / J. Mol. Biol. / Structure of the minor pseudopilin EpsH from the type 2 secretion system of Vibrio cholerae by Yanez (2008)
  81. 10.1016/j.jmb.2007.10.035 / J. Mol. Biol. / The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the type 2 secretion system of Vibrio vulnificus by Yanez (2008)
  82. 10.1107/S0907444903018547 / Acta Crystallogr. D Biol. Crystallogr. / Away from the edge: SAD phasing from the sulfur anomalous signal measured in-house with chromium radiation by Yang (2003)
  83. 10.1111/j.1574-6968.2007.01008.x / FEMS Microbiol. Lett. / Genome-wide in silico mapping of the secretome in pathogenic Yersinia pestis KIM by Yen (2008)
Dates
Type When
Created 16 years, 5 months ago (March 26, 2009, 9:04 a.m.)
Deposited 1 year, 3 months ago (May 8, 2024, 11:44 p.m.)
Indexed 4 months, 3 weeks ago (April 9, 2025, 1:55 p.m.)
Issued 16 years, 3 months ago (June 1, 2009)
Published 16 years, 3 months ago (June 1, 2009)
Published Print 16 years, 3 months ago (June 1, 2009)
Funders 3
  1. National Institutes of Health 10.13039/100000002

    Region: Americas

    gov (National government)

    Labels3
    1. Institutos Nacionales de la Salud
    2. US National Institutes of Health
    3. NIH
    Awards1
    1. AI34501
  2. Howard Hughes Medical Institute 10.13039/100000011

    Region: Americas

    pri (Research institutes and centers)

    Labels2
    1. Howard Hughes Medical Institute Inc
    2. HHMI
    Awards1
    1. AI49294
  3. National Institute of Allergy and Infectious Diseases 10.13039/100000060

    Region: Americas

    gov (National government)

    Labels3
    1. Instituto Nacional de Alergias y Enfermedades Infecciosas
    2. National Institute of Allergy & Infectious Diseases
    3. NIAID

@article{Abendroth_2009, title={The three-dimensional structure of the cytoplasmic domains of EpsF from the type 2 secretion system of Vibrio cholerae}, volume={166}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2009.03.009}, DOI={10.1016/j.jsb.2009.03.009}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Abendroth, Jan and Mitchell, Daniel D. and Korotkov, Konstantin V. and Johnson, Tanya L. and Kreger, Allison and Sandkvist, Maria and Hol, Wim G.J.}, year={2009}, month=jun, pages={303–315} }