DOI: 10.1016/j.jsb.2008.10.004. Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes

Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes

10.1016/j.jsb.2008.10.004

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Winkler, H., Zhu, P., Liu, J., Ye, F., Roux, K. H., & Taylor, K. A. (2009). Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes. Journal of Structural Biology, 165(2), 64â77.

Authors 6

Hanspeter Winkler (first)
Ping Zhu (additional)
Jun Liu (additional)
Feng Ye (additional)
Kenneth H. Roux (additional)
Kenneth A. Taylor (additional)

References 30 Referenced 131

10.1016/j.jsb.2008.02.008 / J. Struct. Biol. / Classification and 3D averaging with missing wedge correction in biological electron tomography by Bartesaghi (2008)
10.1364/JOSAA.7.000601 / J. Opt. Soc. Am. A / Classification of image data in conjugate representation spaces by Borland (1990)
10.1002/j.1460-2075.1993.tb05775.x / EMBO J. / The portal protein of bacteriophage SPP1: a DNA pump with 13-fold symmetry by Dube (1993)
10.1021/la970746j / Langmuir / Computer simulation of a DPPC phospholipid bilayer: structural changes as a function of molecular surface area by Feller (1997)
10.1073/pnas.172520299 / Proc. Natl. Acad. Sci. USA / Identification of macromolecular complexes in cryoelectron tomograms of phantom cells by Frangakis (2002)
10.1146/annurev.biophys.31.082901.134202 / Annu. Rev. Biophys. Biomol. Struct. / Single-particle imaging of macromolecules by cryo-electron microscopy by Frank (2002)
10.1073/pnas.0409178102 / Proc. Natl. Acad. Sci. USA / Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography by Förster (2005)
10.1016/j.jsb.2007.07.006 / J. Struct. Biol. / Classification of cryo-electron sub-tomograms using constrained correlation by Förster (2008)
10.1016/j.jsb.2004.03.008 / J. Struct. Biol. / Electron tomography of fast frozen, stretched rigor fibers reveals elastic distortions in the myosin crossbridges by Liu (2004)
10.1038/nature04719 / Nature / Three-dimensional structure of the myosin V inhibited state by cryoelectron tomography by Liu (2006)
10.1016/j.jmb.2006.07.084 / J. Mol. Biol. / Electron tomography of swollen rigor fibers of insect flight muscle reveals a short and variably angled S2 domain by Liu (2006)
10.1006/jsbi.1999.4174 / J. Struct. Biol. / EMAN: semiautomated software for high-resolution single-particle reconstructions by Ludtke (1999)
10.1214/aoms/1177692644 / Ann. Math. Statist. / Choosing a point from the surface of a sphere by Marsaglia (1972)
10.1006/jsbi.1997.3919 / J. Struct. Biol. / Dual-axis tomography: an approach with alignment methods that preserve resolution by Mastronarde (1997)
10.1016/j.sbi.2007.03.008 / Curr. Opin. Struct. Biol. / AIDS virus envelope spike structure by Roux (2007)
10.1016/0304-3991(84)90057-3 / Ultramicroscopy / Three-dimensional reconstruction of imperfect two-dimensional crystals by Saxton (1984)
10.1016/0304-3991(90)90003-5 / Ultramicroscopy / Invariant classification of molecular views in electron micrographs by Schatz (1990)
10.1016/j.jsb.2007.09.018 / J. Struct. Biol. / Methods for aligning and for averaging 3d volumes with missing data by Schmid (2008)
10.1371/journal.ppat.0020091 / PLoS Pathogens / The SIV surface spike imaged by electron tomography: one leg or three? by Subramaniam (2006)
{'key': '10.1016/j.jsb.2008.10.004_bib20', 'first-page': '114', 'article-title': 'Classification of very large electron microscopical image data sets', 'volume': '82', 'author': 'van Heel', 'year': '1989', 'journal-title': 'Optik'} / Optik / Classification of very large electron microscopical image data sets by van Heel (1989)
10.1017/S0033583500003644 / Q. Rev. Biophys. / Single-particle electron cryo-microscopy: towards atomic resolution by van Heel (2000)
10.1006/jsbi.1997.3934 / J. Struct. Biol. / Electron tomography of single ice-embedded macromolecules: three-dimensional alignment and classification by Walz (1997)
10.1016/j.jsb.2006.07.014 / J. Struct. Biol. / 3D reconstruction and processing of volumetric data in cryo-electron tomography by Winkler (2007)
10.1016/S0304-3991(99)00035-2 / Ultramicroscopy / Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle by Winkler (1999)
10.1016/S1047-8477(03)00120-5 / J. Struct. Biol. / Focus gradient correction applied to tilt series image data used in electron tomography by Winkler (2003)
10.1016/j.ultramic.2005.07.007 / Ultramicroscopy / Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography by Winkler (2006)
10.1016/j.jmb.2008.03.014 / J. Mol. Biol. / Integrin αIIbβ3 in a membrane environment remains the same height after Mn2+ activation when observed by cryo-electron tomography by Ye (2008)
10.1371/journal.ppat.0020083 / PLoS Pathogens / Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ by Zanetti (2006)
10.1038/nature04817 / Nature / Distribution and three-dimensional structure of AIDS virus envelope spikes by Zhu (2006)
10.1371/journal.ppat.1000203 / PLoS Pathogens / Cryoelectron tomography of HIV-1 envelope spikes: further evidence for tripod-like legs by Zhu (2008)

Dates

Type	When
Created	16 years, 9 months ago (Nov. 9, 2008, 4:56 a.m.)
Deposited	6 years, 3 months ago (May 15, 2019, 1:59 a.m.)
Indexed	2 days, 2 hours ago (Aug. 19, 2025, 6:53 a.m.)
Issued	16 years, 6 months ago (Feb. 1, 2009)
Published	16 years, 6 months ago (Feb. 1, 2009)
Published Print	16 years, 6 months ago (Feb. 1, 2009)

Funders 0

None

BibTeX

@article{Winkler_2009, title={Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes}, volume={165}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2008.10.004}, DOI={10.1016/j.jsb.2008.10.004}, number={2}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Winkler, Hanspeter and Zhu, Ping and Liu, Jun and Ye, Feng and Roux, Kenneth H. and Taylor, Kenneth A.}, year={2009}, month=feb, pages={64–77} }

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