DOI: 10.1016/j.jsb.2007.07.007. Markov random field based automatic image alignment for electron tomography

Markov random field based automatic image alignment for electron tomography

10.1016/j.jsb.2007.07.007

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Amat, F., Moussavi, F., Comolli, L. R., Elidan, G., Downing, K. H., & Horowitz, M. (2008). Markov random field based automatic image alignment for electron tomography. Journal of Structural Biology, 161(3), 260â275.

Authors 6

Fernando Amat (first)
Farshid Moussavi (additional)
Luis R. Comolli (additional)
Gal Elidan (additional)
Kenneth H. Downing (additional)
Mark Horowitz (additional)

References 26 Referenced 130

10.1016/S0959-440X(02)00378-0 / Curr. Opin. Struct. Biol. / Electron tomography: towards visualizing the molecular organization of the cytoplasm by Baumeister (2002)
{'key': '10.1016/j.jsb.2007.07.007_bib2', 'series-title': 'Pattern Recognition and Machine Learning', 'author': 'Bishop', 'year': '2006'} / Pattern Recognition and Machine Learning by Bishop (2006)
{'key': '10.1016/j.jsb.2007.07.007_bib3', 'series-title': 'Convex Optimization', 'author': 'Boyd', 'year': '2004'} / Convex Optimization by Boyd (2004)
10.1006/jsbi.2001.4343 / J. Struct. Biol. / Multiphase method for automatic alignment of transmission electron microscope images using markers by Brandt (2001)
10.1111/j.1365-2818.2006.01545.x / J. Microscopy / Automatic TEM image alignment by trifocal geometry by Brandt (2006)
10.1016/j.jsb.2005.04.006 / J. Struct. Biol. / A resolution criterion for electron tomography based on cross-validation by Cardone (2005)
10.1016/j.jsb.2005.08.004 / J. Struct. Biol. / Dose tolerance at helium and nitrogen temperatures for whole cell electron tomography by Comolli (2005)
Elidan, G., Mcgraw, I., Koller, D., 2006. Residual belief propagation: informed scheduling for asynchronous message passing. Proceedings of the 22nd Conference on Uncertainty in Artificial Intelligence.
{'key': '10.1016/j.jsb.2007.07.007_bib9', 'series-title': 'Electron Tomography', 'author': 'Frank', 'year': '2006'} / Electron Tomography by Frank (2006)
{'key': '10.1016/j.jsb.2007.07.007_bib10', 'series-title': 'Three Dimensional Electron Microscopy of Macromolecular Assemblies', 'author': 'Frank', 'year': '1996'} / Three Dimensional Electron Microscopy of Macromolecular Assemblies by Frank (1996)
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{'key': '10.1016/j.jsb.2007.07.007_bib12', 'series-title': 'Robust Statistics', 'author': 'Huber', 'year': '1981'} / Robust Statistics by Huber (1981)
10.1016/j.sbi.2007.03.002 / Curr. Opin. Struct. Biol. / How electron cryotomography is opening a new window onto prokaryotic ultrastructure by Jensen (2007)
Ke, Q., Kanade, T., 2005. Robust L1 norm factorization in the presence of outliers and missing data by alternative convex programming. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2005), San Diego, CA.
10.1109/18.910572 / IEEE Trans. Inf. Theory / Factor graphs and the sum-product algorithm by Kschiang (2001)
10.1006/jsbi.1997.3933 / J. Struct. Biol. / Perspectives of molecular and cellular electron tomography by Koster (1997)
{'key': '10.1016/j.jsb.2007.07.007_bib17', 'first-page': 'SS6', 'article-title': 'Electron microscopy in cell biology: integrating structure and function', 'volume': '4', 'author': 'Koster', 'year': '2003', 'journal-title': 'Nat. Rev. Mol. Cell Biol.'} / Nat. Rev. Mol. Cell Biol. / Electron microscopy in cell biology: integrating structure and function by Koster (2003)
10.1006/jsbi.1996.0013 / J. Struct. Biol. / Computer visualization of three-dimensional image data using IMOD by Kremer (1996)
10.1016/j.jsb.2005.12.012 / J. Struct. Biol. / Transform-based backprojection for volume reconstruction of large format electron microscope tilt series by Lawrence (2006)
10.1006/jsbi.1997.3919 / J. Struct. Biol. / Dual-axis tomography: an approach with alignment methods that preserve resolution by Mastronarde (1997)
10.1126/science.1076184 / Science / Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography by Medalia (2002)
Murphy, K., Weiss, Y., 1999. Loopy belief propagation for approximate inference: an empirical study. Proceedings of the 15th Conference on Uncertainty in Artificial Intelligence, pp. 467–475.
10.1093/oxfordjournals.jmicro.a023679 / J. Electron Microsc. / Automatic acquisition of fiducial markers and alignment of images in tilt series for electron tomography by Ress (1999)
10.1109/TIT.2005.850085 / IEEE Trans. Inf. Theory / Constructing free-energy approximations and generalized belief propagation algorithms by Yedidia (2005)
Yedidia, J.S., Freeman, W.T., Weiss, Y., 2000. Generalized belief propagation. Proceedings of the 14th Conference on Neural Information Processing Systems, pp. 689–695.
10.1016/j.jsb.2006.06.005 / J. Struct. Biol. / UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction by Zheng (2007)

Dates

Type	When
Created	18 years, 1 month ago (July 31, 2007, 7:58 a.m.)
Deposited	6 years, 7 months ago (Jan. 5, 2019, 2 p.m.)
Indexed	5 days, 19 hours ago (Aug. 28, 2025, 8:51 a.m.)
Issued	17 years, 6 months ago (March 1, 2008)
Published	17 years, 6 months ago (March 1, 2008)
Published Print	17 years, 6 months ago (March 1, 2008)

Funders 0

None

BibTeX

@article{Amat_2008, title={Markov random field based automatic image alignment for electron tomography}, volume={161}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2007.07.007}, DOI={10.1016/j.jsb.2007.07.007}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Amat, Fernando and Moussavi, Farshid and Comolli, Luis R. and Elidan, Gal and Downing, Kenneth H. and Horowitz, Mark}, year={2008}, month=mar, pages={260–275} }

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