DOI: 10.1016/j.jsb.2007.03.005. Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation

Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation

10.1016/j.jsb.2007.03.005

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Yoshioka, C., Pulokas, J., Fellmann, D., Potter, C. S., Milligan, R. A., & Carragher, B. (2007). Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation. Journal of Structural Biology, 159(3), 335â346.

Authors 6

Craig Yoshioka (first)
James Pulokas (additional)
Denis Fellmann (additional)
Clinton S. Potter (additional)
Ronald A. Milligan (additional)
Bridget Carragher (additional)

References 31 Referenced 34

10.1016/S0304-3991(97)00126-5 / Ultramicroscopy / Evaluation of charging on macromolecules in electron cryomicroscopy by Brink (1998)
{'key': '10.1016/j.jsb.2007.03.005_bib2', 'article-title': 'Automatic panoramic image stitching using invariant features', 'author': 'Brown', 'year': '2006', 'journal-title': 'International Journal of Computer Vision'} / International Journal of Computer Vision / Automatic panoramic image stitching using invariant features by Brown (2006)
10.1145/358669.358692 / Communications of the ACM / Random sample consensus—a paradigm for model-fitting with applications to image-analysis and automated cartography by Fischler (1981)
10.1109/34.765658 / IEEE Transactions on Pattern Analysis and Machine Intelligence / Direct least square fitting of ellipses by Fitzgibbon (1999)
{'year': '2006', 'series-title': 'Three-dimensional Electron Microscopy of Macromolecular Assemblies: Visualization of Biological Molecules in Their Native State', 'author': 'Frank', 'key': '10.1016/j.jsb.2007.03.005_bib5'} / Three-dimensional Electron Microscopy of Macromolecular Assemblies: Visualization of Biological Molecules in Their Native State by Frank (2006)
10.1017/S1431927604040668 / Microscopy and Microanalysis / Specimen charging on thin films with one conducting layer: discussion of physical principles by Glaeser (2003)
10.1016/j.jsb.2004.01.012 / Journal of Structural Biology / Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique by Gyobu (2004)
Harris, C., Stephens. M.J., 1988. A combined corner and edge detector, pp. 147–152 Alvey Vision Conference. (10.5244/C.2.23)
Ke, Y., Sukthankar. R., 2004. PCA-SIFT: A more distinctive representation for local image descriptors. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, vol. 2, pp. 506–513. (10.1109/CVPR.2004.1315206)
Kirk, D., 1992. Graphics gems III Harcourt Brace Jovanovich, Boston.
10.1016/j.jsb.2005.01.002 / Journal of Structural Biology / Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope by Lei (2005)
10.1016/j.jsb.2005.10.012 / Journal of Structural Biology / The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles by Leschziner (2006)
10.1023/B:VISI.0000029664.99615.94 / International Journal of Computer Vision / Distinctive image features from scale-invariant keypoints by Lowe (2004)
10.1016/j.ultramic.2005.02.004 / Ultramicroscopy / ACE: automated CTF estimation by Mallick (2005)
{'key': '10.1016/j.jsb.2007.03.005_bib15', 'first-page': '384', 'article-title': 'Robust wide baseline stereo from maximally stable extremal regions', 'volume': '1', 'author': 'Matas', 'year': '2002', 'journal-title': 'Proceedings of the British Machine Vision Conference'} / Proceedings of the British Machine Vision Conference / Robust wide baseline stereo from maximally stable extremal regions by Matas (2002)
10.1109/TPAMI.2005.188 / Pattern Analysis and Machine Intelligence / A performance evaluation of local descriptors by Mikolajczyk (2004)
10.1007/s11263-005-3848-x / International Journal of Computer Vision / A comparison of affine region detectors by Mikolajczyk (2005)
10.1016/j.jsb.2004.10.006 / Journal of Structural Biology / TOM software toolbox: acquisition and analysis for electron tomography by Nickell (2005)
{'key': '10.1016/j.jsb.2007.03.005_bib19', 'first-page': '1', 'article-title': 'Sub-linear indexing for large scale object recognition', 'volume': '1', 'author': 'Obdrzálek', 'year': '2005', 'journal-title': 'Proceedings of the British Machine Vision Conference'} / Proceedings of the British Machine Vision Conference / Sub-linear indexing for large scale object recognition by Obdrzálek (2005)
10.1016/S0304-3991(98)00022-9 / Ultramicroscopy / Automation of specimen selection and data acquisiton for protein crystallography by Oostergetel (1998)
10.1016/j.sbi.2004.08.004 / Current Opinion in Structural Biology / Structure determination of macromolecular assemblies by single-particle analysis of cryo-electron micrographs by Orlova (2004)
10.1016/S0304-3991(99)00043-1 / Ultramicroscopy / Leginon: a system for fully automated acquisition of 1000 electron micrographs a day by Potter (1999)
10.1006/jsbi.1999.4181 / Journal of Structural Biology / Improving the positional accuracy of the goniometer on the Philips CM series TEM by Pulokas (1999)
10.1002/jemt.1060090405 / Journal of Electron Microscopy Technique / Three-dimensional reconstruction of single particles from random and nonrandom tilt series by Radermacher (1988)
{'year': '1998', 'series-title': 'Algorithms in C', 'author': 'Sedgewick', 'key': '10.1016/j.jsb.2007.03.005_bib25'} / Algorithms in C by Sedgewick (1998)
10.1016/j.jsb.2006.04.005 / Journal of Structural Biology / Automated cryoEM data acquisition and analysis of 284742 particles of GroEL by Stagg (2006)
10.1016/j.jsb.2005.03.010 / Journal of Structural Biology / Automated molecular microscopy: the new Leginon system by Suloway (2005)
10.1016/0304-3991(87)90078-7 / Ultramicroscopy / Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction by Van Heel (1987)
10.1016/S1047-8477(03)00124-2 / Journal of Structural Biology / Automated image acquisition and processing using a new generation of 4K×4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies by Zhang (2003)
10.1016/j.jsb.2006.10.026 / Journal of Structural Biology / Automated acquisition of electron microscopic random conical tilt sets by Zheng (2007)
10.1016/j.jsb.2006.06.005 / Journal of Structural Biology / UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction by Zheng (2007)

Dates

Type	When
Created	18 years, 3 months ago (April 21, 2007, 7:10 a.m.)
Deposited	7 months ago (Jan. 15, 2025, 4:34 p.m.)
Indexed	6 months ago (Feb. 20, 2025, 9:38 p.m.)
Issued	17 years, 11 months ago (Sept. 1, 2007)
Published	17 years, 11 months ago (Sept. 1, 2007)
Published Print	17 years, 11 months ago (Sept. 1, 2007)

Funders 1

National Institutes of Health 10.13039/100000002
Region: Americas
gov (National government)
Labels3
1. Institutos Nacionales de la Salud
2. US National Institutes of Health
3. NIH
Awards2
1. RR23093
2. RR17573

BibTeX

@article{Yoshioka_2007, title={Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation}, volume={159}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2007.03.005}, DOI={10.1016/j.jsb.2007.03.005}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Yoshioka, Craig and Pulokas, James and Fellmann, Denis and Potter, Clinton S. and Milligan, Ronald A. and Carragher, Bridget}, year={2007}, month=sep, pages={335–346} }

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