DOI: 10.1016/j.jsb.2006.07.003. SPARX, a new environment for Cryo-EM image processing

SPARX, a new environment for Cryo-EM image processing

10.1016/j.jsb.2006.07.003

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Hohn, M., Tang, G., Goodyear, G., Baldwin, P. R., Huang, Z., Penczek, P. A., Yang, C., Glaeser, R. M., Adams, P. D., & Ludtke, S. J. (2007). SPARX, a new environment for Cryo-EM image processing. Journal of Structural Biology, 157(1), 47â55.

Authors 10

Michael Hohn (first)
Grant Tang (additional)
Grant Goodyear (additional)
P.R. Baldwin (additional)
Zhong Huang (additional)
Pawel A. Penczek (additional)
Chao Yang (additional)
Robert M. Glaeser (additional)
Paul D. Adams (additional)
Steven J. Ludtke (additional)

References 24 Referenced 352

{'key': '10.1016/j.jsb.2006.07.003_bib1', 'first-page': '29', 'article-title': 'Building hybrid systems with Boost Python', 'volume': '21', 'author': 'Abrahams', 'year': '2003', 'journal-title': 'CC Plus Plus Users Journal'} / CC Plus Plus Users Journal / Building hybrid systems with Boost Python by Abrahams (2003)
10.1107/S0907444902016657 / Acta. Cryst. D / PHENIX: building new software for automated crystallographic structure determination by Adams (2002)
10.1107/S0909049503024130 / J. Synchrotron. Radiat. / Recent developments in the PHENIX software for automated crystallographic structure determination by Adams (2004)
10.1006/jsbi.1996.0020 / J. Struct. Biol. / A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy by Baker (1996)
10.1006/jsbi.1996.0018 / J. Struct. Biol. / Helical processing using PHOELIX by Carragher (1996)
10.1006/jsbi.1996.0003 / J. Struct. Biol. / MRC image processing programs by Crowther (1996)
10.1006/jsbi.1996.0030 / J. Struct. Biol. / SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields by Frank (1996)
10.1016/0022-5193(70)90109-8 / J. Theor. Biol. / Algebraic reconstruction techniques (ART) for three-dimensional electron microscopy and X-ray photography by Gordon (1970)
10.1006/jmbi.1998.1668 / J. Mol. Biol. / Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22Å in ice by Grigorieff (1998)
10.1107/S0021889801017824 / J. Appl. Cryst. / The computational crystallography toolbox: crystallographic algorithms in a reusable software framework by Grosse-Kunstleve (2002)
Grosse-Kunstleve, R.W., Afonine, P.V., Sauter, N.K., Adams, P.D. 2005. cctbx news: Phil and friends. Newsletter of the Commission on Crystallographic Computing, International Union of Crystallography, 5.
10.1006/jsbi.1996.0006 / J. Struct. Biol. / The EM program package: a platform for image processing in biological electron microscopy by Hegerl (1996)
10.1006/jsbi.2001.4339 / J. Struct. Biol. / Bsoft: image and molecular processing in electron microscopy by Heymann (2001)
10.1006/jsbi.1996.0013 / J. Struct. Biol. / Computer visualization of three-dimensional image data using IMOD by Kremer (1996)
10.1016/0022-5193(79)90313-8 / J. Theor. Biol. / Methods of least squares and SIRT in reconstruction by Lakshminarayanan (1979)
10.1016/S1047-8477(02)00014-X / J. Struct. Biol. / IMIRS: a high-resolution 3D reconstruction package integrated with a relational image database by Liang (2002)
10.1364/JOSAA.21.000499 / J. Opt. Soc. Am. A / Gridding-based direct Fourier inversion of the three-dimensional ray transform by Penczek (2004)
10.1002/jcc.20084 / J. Comput. Chem. / UCSF Chimera—a visualization system for exploratory research and analysis by Pettersen (2004)
Sanner, M.F., Stoffler, D., Olson, A.J. 2002. ViPEr, a visual Programming Environment for Python, Paper presented at: Proceedings of the 10th International Python conference. (10.1109/HICSS.2003.1174804)
10.1006/jsbi.1996.0021 / J. Struct. Biol. / SUPRIM: easily modified image processing software by Schroeter (1996)
10.1016/j.jsb.2004.06.006 / J. Struct. Biol. / XMIPP: a new generation of an open-source image processing package for electron microscopy by Sorzano (2004)
{'key': '10.1016/j.jsb.2006.07.003_bib22', 'series-title': 'International Tables for Crystallography', 'article-title': 'Three-dimensional reconstruction', 'author': 'Vainshtein', 'year': '2006'} / International Tables for Crystallography / Three-dimensional reconstruction by Vainshtein (2006)
10.1006/jsbi.1996.0004 / J. Struct. Biol. / A new generation of the IMAGIC image processing system by van Heel (1996)
10.1016/j.jsb.2004.08.010 / J. Struct. Biol. / Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm by Yang (2005)

Dates

Type	When
Created	19 years, 1 month ago (July 18, 2006, 7:13 a.m.)
Deposited	7 months, 1 week ago (Jan. 9, 2025, 6:26 p.m.)
Indexed	2 weeks, 6 days ago (Aug. 2, 2025, 12:01 a.m.)
Issued	18 years, 7 months ago (Jan. 1, 2007)
Published	18 years, 7 months ago (Jan. 1, 2007)
Published Print	18 years, 7 months ago (Jan. 1, 2007)

Funders 0

None

BibTeX

@article{Hohn_2007, title={SPARX, a new environment for Cryo-EM image processing}, volume={157}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2006.07.003}, DOI={10.1016/j.jsb.2006.07.003}, number={1}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Hohn, Michael and Tang, Grant and Goodyear, Grant and Baldwin, P.R. and Huang, Zhong and Penczek, Pawel A. and Yang, Chao and Glaeser, Robert M. and Adams, Paul D. and Ludtke, Steven J.}, year={2007}, month=jan, pages={47–55} }

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