DOI: 10.1016/j.jsb.2006.06.005. UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction

UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction

10.1016/j.jsb.2006.06.005

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Zheng, S. Q., Keszthelyi, B., Branlund, E., Lyle, J. M., Braunfeld, M. B., Sedat, J. W., & Agard, D. A. (2007). UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. Journal of Structural Biology, 157(1), 138â147.

Authors 7

Shawn Q. Zheng (first)
Bettina Keszthelyi (additional)
Eric Branlund (additional)
John M. Lyle (additional)
Michael B. Braunfeld (additional)
John W. Sedat (additional)
David A. Agard (additional)

References 20 Referenced 212

10.1016/S0962-8924(98)01423-8 / Trends Cell. Biol. / Electron tomography of molecules and cells by Baumeister (1999)
10.1007/BF00291049 / Chromosoma / Large-scale chromatin structural domains within mitotic and inter-phase chromosomes in vivo and in vitro by Belmont (1989)
10.1038/259020a0 / Nature / The structure of the protein disk of tobacco mosaic virus to 5A resolution by Champness (1976)
10.1006/jsbi.1996.0010 / J. Struct. Biol. / IVE (image visualization environment): a software platform for all three-dimensional microscopy applications by Chen (1996)
10.1016/0304-3991(92)90235-C / Ultramicroscopy / Toward automatic electron tomography by Dierksen (1992)
10.1002/jemt.1060060210 / J. Electron Microsc. Tech. / Three-dimensional tomographic reconstruction in high-voltage electron microscopy by Frank (1987)
{'key': '10.1016/j.jsb.2006.06.005_bib7', 'series-title': 'Electron Tomography', 'first-page': '205', 'article-title': 'Alignment by Cross-Correlation', 'author': 'Frank', 'year': '1992'} / Electron Tomography / Alignment by Cross-Correlation by Frank (1992)
10.1006/jsbi.1996.0029 / J. Struct. Biol. / Toward fully automated high-resolution electron tomography by Fung (1996)
10.1016/S0006-3495(97)78689-2 / Biophys. J. / Energy filtered electron tomography of ice-embedded actin and vesicles by Grimm (1997)
Keszthelyi, B., in preparation.
10.1016/0304-3991(92)90016-D / Ultramicroscopy / Automated microscopy for electron tomography by Koster (1992)
{'issue': '2', 'key': '10.1016/j.jsb.2006.06.005_bib12', 'first-page': '176', 'article-title': 'Towards automatic three dimensional imaging of large biological structures using intermediate voltage electron microscopy', 'volume': '23', 'author': 'Koster', 'year': '1993', 'journal-title': 'MSA Bulletin'} / MSA Bulletin / Towards automatic three dimensional imaging of large biological structures using intermediate voltage electron microscopy by Koster (1993)
{'key': '10.1016/j.jsb.2006.06.005_bib13', 'series-title': 'Electron Tomography', 'first-page': '197', 'article-title': 'Least-squares methods of alignment using markers, Electron Tomography', 'author': 'Lawrence', 'year': '1992'} / Electron Tomography / Least-squares methods of alignment using markers, Electron Tomography by Lawrence (1992)
10.1073/pnas.83.23.9040 / Proc. Natl. Acad. Sci. USA / Tomographic three-dimensional reconstruction of cilia ultrastructure from thick sections by McEwen (1986)
10.1016/j.tcb.2004.11.009 / Trends Cell. Biol. / New views of cells in 3D: an introduction to electron tomography by McIntosh (2005)
10.1016/j.jsb.2004.10.006 / J. Struct. Biol. / TOM software toolbox: acquisition and analysis for electron tomography by Nickell (2005)
Papadopoulos, P.M., Katz, M.J., Bruno, G., 2001. NPACI rocks: tools and techniques for easily deploying manageable linux clusters. In: Cluster 2001: IEEE International conference on cluster computing. (10.1109/CLUSTR.2001.959986)
10.1006/jsbi.1997.3924 / J. Struct. Biol. / Low-dose automated electron tomography: a recent implementation by Rath (1997)
10.1016/j.jsb.2004.02.005 / J. Struct. Biol. / An improved strategy for automated electron microscopic tomography by Zheng (2004)
10.1046/j.0022-2720.2001.00987.x / J. Microsc. / Automated high-throughput electron tomography by pre-calibration of image shifts by Ziese (2002)

Dates

Type	When
Created	19 years, 1 month ago (June 24, 2006, 7:27 a.m.)
Deposited	6 years, 4 months ago (April 19, 2019, 10:50 a.m.)
Indexed	3 months, 1 week ago (May 12, 2025, 8:06 a.m.)
Issued	18 years, 7 months ago (Jan. 1, 2007)
Published	18 years, 7 months ago (Jan. 1, 2007)
Published Print	18 years, 7 months ago (Jan. 1, 2007)

Funders 0

None

BibTeX

@article{Zheng_2007, title={UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction}, volume={157}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2006.06.005}, DOI={10.1016/j.jsb.2006.06.005}, number={1}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Zheng, Shawn Q. and Keszthelyi, Bettina and Branlund, Eric and Lyle, John M. and Braunfeld, Michael B. and Sedat, John W. and Agard, David A.}, year={2007}, month=jan, pages={138–147} }

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