DOI: 10.1016/j.jmb.2009.01.042. Conserved Element of the Dicistrovirus IGR IRES that Mimics an E-site tRNA/Ribosome Interaction Mediates Multiple Functions

Conserved Element of the Dicistrovirus IGR IRES that Mimics an E-site tRNA/Ribosome Interaction Mediates Multiple Functions

10.1016/j.jmb.2009.01.042

Crossref journal-article

Elsevier BV

Journal of Molecular Biology (78)

Bibliography

Jang, C. J., Lo, M. C. Y., & Jan, E. (2009). Conserved Element of the Dicistrovirus IGR IRES that Mimics an E-site tRNA/Ribosome Interaction Mediates Multiple Functions. Journal of Molecular Biology, 387(1), 42â58.

Authors 3

Christopher J. Jang (first)
Miranda C.Y. Lo (additional)
Eric Jan (additional)

References 48 Referenced 37

{'key': '10.1016/j.jmb.2009.01.042_bib1', 'series-title': 'Translational Control in Biology and Medicine', 'first-page': '87', 'article-title': 'The mechanism of translation initiation in eukaryotes', 'author': 'Pestova', 'year': '2007'} / Translational Control in Biology and Medicine / The mechanism of translation initiation in eukaryotes by Pestova (2007)
10.1073/pnas.95.19.11089 / Proc. Natl Acad. Sci. USA / Proteolysis of human eukaryotic translation initiation factor eIF4GII, but not eIF4GI, coincides with the shutoff of host protein synthesis after poliovirus infection by Gradi (1998)
10.1101/gad.891101 / Genes Dev. / Internal ribosome entry sites in eukaryotic mRNA molecules by Hellen (2001)
10.1128/MCB.18.6.3112 / Mol. Cell Biol. / Translation of vascular endothelial growth factor mRNA by internal ribosome entry: implications for translation under hypoxia by Stein (1998)
10.1128/MCB.18.11.6178 / Mol. Cell Biol. / Two independent internal ribosome entry sites are involved in translation initiation of vascular endothelial growth factor mRNA by Huez (1998)
10.1038/sj.onc.1201763 / Oncogene / C-Myc 5′ untranslated region contains an internal ribosome entry segment by Stoneley (1998)
10.1016/S0022-2836(02)01099-9 / J. Mol. Biol. / Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus by Jan (2002)
10.1101/gad.1040803 / Genes Dev. / Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA by Pestova (2003)
10.1128/JVI.73.2.1219-1226.1999 / J. Virol. / Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro by Sasaki (1999)
10.1073/pnas.010426997 / Proc. Natl Acad. Sci. USA / Methionine-independent initiation of translation in the capsid protein of an insect RNA virus by Sasaki (2000)
10.1073/pnas.2535183100 / Proc. Natl Acad. Sci. USA / Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis by Jan (2003)
10.1093/nar/gkg336 / Nucleic Acids Res. / Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes by Nishiyama (2003)
10.1016/S0092-8674(00)00055-6 / Cell / Initiation of protein synthesis from the A site of the ribosome by Wilson (2000)
10.1128/MCB.20.14.4990-4999.2000 / Mol. Cell Biol. / Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites by Wilson (2000)
10.1017/S1355838201001741 / RNA / A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation by Kanamori (2001)
10.1261/rna.7184705 / RNA / A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs by Costantino (2005)
10.1126/science.1133281 / Science / Structural basis for ribosome recruitment and manipulation by a viral IRES RNA by Pfingsten (2006)
10.1038/nsmb1351 / Nature Struct. Mol. Biol. / tRNA-mRNA mimicry drives translation initiation from a viral IRES by Costantino (2008)
10.1038/nsmb1177 / Nat. Struct. Mol. Biol. / Structure of the ribosome-bound cricket paralysis virus IRES RNA by Schuler (2006)
10.1016/j.virusres.2005.10.011 / Virus Res. / Divergent IRES elements in invertebrates by Jan (2006)
{'key': '10.1016/j.jmb.2009.01.042_bib21', 'article-title': 'Functional analysis of structural motifs in dicistroviruses', 'author': 'Nakashima', 'year': '2008', 'journal-title': 'Virus Res.'} / Virus Res. / Functional analysis of structural motifs in dicistroviruses by Nakashima (2008)
10.1261/rna.5208104 / RNA / Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts by Hatakeyama (2004)
10.1128/JVI.79.2.677-683.2005 / J. Virol. / Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp by Cevallos (2005)
10.1016/j.jmb.2007.04.076 / J. Mol. Biol. / Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes by Pfingsten (2007)
10.1016/j.cell.2004.08.001 / Cell / Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor by Spahn (2004)
10.1261/rna.987808 / RNA / RNA structure-based ribosome recruitment: lessons from the Dicistroviridae intergenic region IRESes by Pfingsten (2008)
10.1126/science.1058409 / Science / Hepatitis C virus IRES RNA-induced changes in the conformation of the 40 S ribosomal subunit by Spahn (2001)
10.1038/sj.emboj.7600102 / EMBO J. / Domain movements of elongation factor eEF2 and the eukaryotic 80 S ribosome facilitate tRNA translocation by Spahn (2004)
10.1093/nar/gkl1121 / Nucleic Acids Res. / Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site by Nishiyama (2007)
10.1091/mbc.E06-06-0478 / Mol. Biol. Cell / Initiation of protein synthesis by hepatitis C virus is refractory to reduced eIF2.GTP.Met-tRNAiMet ternary complex availability by Robert (2006)
10.1038/sj.embor.7400240 / EMBO Rep. / Position of the CrPV IRES on the 40 S subunit and factor dependence of IRES/80 S ribosome assembly by Pestova (2004)
{'key': '10.1016/j.jmb.2009.01.042_bib32', 'article-title': 'Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures', 'author': 'Kieft', 'year': '2008', 'journal-title': 'Virus Res'} / Virus Res / Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures by Kieft (2008)
10.1093/emboj/19.11.2710 / EMBO J. / Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80 S ribosome at 17.5 Å resolution by Gomez-Lorenzo (2000)
10.1016/j.molcel.2008.03.012 / Mol. Cell / Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation by Fei (2008)
10.1016/S0092-8674(03)00476-8 / Cell / Locking and unlocking of ribosomal motions by Valle (2003)
10.1038/35018597 / Nature / A ratchet-like inter-subunit reorganization of the ribosome during translocation by Frank (2000)
10.1016/S0092-8674(03)00478-1 / Cell / Peptidyl-tRNA regulates the GTPase activity of translation factors by Zavialov (2003)
10.1074/jbc.M610887200 / J. Biol. Chem. / Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site by Yamamoto (2007)
10.1093/nar/gki910 / Nucleic Acids Res. / Function of the ribosomal E-site: a mutagenesis study by Sergiev (2005)
10.1002/j.1460-2075.1989.tb08574.x / EMBO J. / Binding of the 3′ terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation by Lill (1989)
10.1021/bi00027a041 / Biochemistry / Interaction of human immunodeficiency virus type 1 Tat-derived peptides with TAR RNA by Long (1995)
10.1017/S1355838299991057 / RNA / Probing the TRAP-RNA interaction with nucleoside analogs by Elliott (1999)
10.1016/j.cell.2004.06.012 / Cell / Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2 by Marquez (2004)
10.1016/j.molcel.2005.10.007 / Mol. Cell / Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome by McGarry (2005)
10.1101/sqb.2001.66.135 / Cold Spring Harbor Symp. Quant. Biol. / Features and functions of the ribosomal E site by Blaha (2001)
10.1002/j.1460-2075.1990.tb07904.x / EMBO J. / Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site by Geigenmuller (1990)
10.1016/j.biochi.2006.02.009 / Biochimie / Decoding errors and the involvement of the E-site by Nierhaus (2006)
10.1016/S0076-6879(88)64064-X / Methods Enzymol. / Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension by Stern (1988)

Dates

Type	When
Created	16 years, 7 months ago (Jan. 30, 2009, 4:33 a.m.)
Deposited	5 years, 3 months ago (May 15, 2020, 1:50 a.m.)
Indexed	1 month, 4 weeks ago (July 2, 2025, 2:33 p.m.)
Issued	16 years, 5 months ago (March 1, 2009)
Published	16 years, 5 months ago (March 1, 2009)
Published Print	16 years, 5 months ago (March 1, 2009)

Funders 0

None

BibTeX

@article{Jang_2009, title={Conserved Element of the Dicistrovirus IGR IRES that Mimics an E-site tRNA/Ribosome Interaction Mediates Multiple Functions}, volume={387}, ISSN={0022-2836}, url={http://dx.doi.org/10.1016/j.jmb.2009.01.042}, DOI={10.1016/j.jmb.2009.01.042}, number={1}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Jang, Christopher J. and Lo, Miranda C.Y. and Jan, Eric}, year={2009}, month=mar, pages={42–58} }

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      "article-title": "The mechanism of translation initiation in eukaryotes",
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      "article-title": "Internal ribosome entry sites in eukaryotic mRNA molecules",
      "volume": "15",
      "author": "Hellen",
      "year": "2001",
      "journal-title": "Genes Dev."
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      "article-title": "Translation of vascular endothelial growth factor mRNA by internal ribosome entry: implications for translation under hypoxia",
      "volume": "18",
      "author": "Stein",
      "year": "1998",
      "journal-title": "Mol. Cell Biol."
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      "doi-asserted-by": "crossref",
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      "DOI": "10.1128/MCB.18.11.6178",
      "article-title": "Two independent internal ribosome entry sites are involved in translation initiation of vascular endothelial growth factor mRNA",
      "volume": "18",
      "author": "Huez",
      "year": "1998",
      "journal-title": "Mol. Cell Biol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib6",
      "doi-asserted-by": "crossref",
      "first-page": "423",
      "DOI": "10.1038/sj.onc.1201763",
      "article-title": "C-Myc 5\u2032 untranslated region contains an internal ribosome entry segment",
      "volume": "16",
      "author": "Stoneley",
      "year": "1998",
      "journal-title": "Oncogene"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib7",
      "doi-asserted-by": "crossref",
      "first-page": "889",
      "DOI": "10.1016/S0022-2836(02)01099-9",
      "article-title": "Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus",
      "volume": "324",
      "author": "Jan",
      "year": "2002",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib8",
      "doi-asserted-by": "crossref",
      "first-page": "181",
      "DOI": "10.1101/gad.1040803",
      "article-title": "Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA",
      "volume": "17",
      "author": "Pestova",
      "year": "2003",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib9",
      "doi-asserted-by": "crossref",
      "first-page": "1219",
      "DOI": "10.1128/JVI.73.2.1219-1226.1999",
      "article-title": "Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro",
      "volume": "73",
      "author": "Sasaki",
      "year": "1999",
      "journal-title": "J. Virol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib10",
      "doi-asserted-by": "crossref",
      "first-page": "1512",
      "DOI": "10.1073/pnas.010426997",
      "article-title": "Methionine-independent initiation of translation in the capsid protein of an insect RNA virus",
      "volume": "97",
      "author": "Sasaki",
      "year": "2000",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib11",
      "doi-asserted-by": "crossref",
      "first-page": "15410",
      "DOI": "10.1073/pnas.2535183100",
      "article-title": "Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis",
      "volume": "100",
      "author": "Jan",
      "year": "2003",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "2434",
      "DOI": "10.1093/nar/gkg336",
      "article-title": "Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes",
      "volume": "31",
      "author": "Nishiyama",
      "year": "2003",
      "journal-title": "Nucleic Acids Res."
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    {
      "key": "10.1016/j.jmb.2009.01.042_bib13",
      "doi-asserted-by": "crossref",
      "first-page": "511",
      "DOI": "10.1016/S0092-8674(00)00055-6",
      "article-title": "Initiation of protein synthesis from the A site of the ribosome",
      "volume": "102",
      "author": "Wilson",
      "year": "2000",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib14",
      "doi-asserted-by": "crossref",
      "first-page": "4990",
      "DOI": "10.1128/MCB.20.14.4990-4999.2000",
      "article-title": "Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites",
      "volume": "20",
      "author": "Wilson",
      "year": "2000",
      "journal-title": "Mol. Cell Biol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib15",
      "doi-asserted-by": "crossref",
      "first-page": "266",
      "DOI": "10.1017/S1355838201001741",
      "article-title": "A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation",
      "volume": "7",
      "author": "Kanamori",
      "year": "2001",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib16",
      "doi-asserted-by": "crossref",
      "first-page": "332",
      "DOI": "10.1261/rna.7184705",
      "article-title": "A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs",
      "volume": "11",
      "author": "Costantino",
      "year": "2005",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib17",
      "doi-asserted-by": "crossref",
      "first-page": "1450",
      "DOI": "10.1126/science.1133281",
      "article-title": "Structural basis for ribosome recruitment and manipulation by a viral IRES RNA",
      "volume": "314",
      "author": "Pfingsten",
      "year": "2006",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib18",
      "doi-asserted-by": "crossref",
      "first-page": "57",
      "DOI": "10.1038/nsmb1351",
      "article-title": "tRNA-mRNA mimicry drives translation initiation from a viral IRES",
      "volume": "15",
      "author": "Costantino",
      "year": "2008",
      "journal-title": "Nature Struct. Mol. Biol."
    },
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      "key": "10.1016/j.jmb.2009.01.042_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "1092",
      "DOI": "10.1038/nsmb1177",
      "article-title": "Structure of the ribosome-bound cricket paralysis virus IRES RNA",
      "volume": "13",
      "author": "Schuler",
      "year": "2006",
      "journal-title": "Nat. Struct. Mol. Biol."
    },
    {
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      "doi-asserted-by": "crossref",
      "first-page": "16",
      "DOI": "10.1016/j.virusres.2005.10.011",
      "article-title": "Divergent IRES elements in invertebrates",
      "volume": "119",
      "author": "Jan",
      "year": "2006",
      "journal-title": "Virus Res."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib21",
      "article-title": "Functional analysis of structural motifs in dicistroviruses",
      "author": "Nakashima",
      "year": "2008",
      "journal-title": "Virus Res."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib22",
      "doi-asserted-by": "crossref",
      "first-page": "779",
      "DOI": "10.1261/rna.5208104",
      "article-title": "Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts",
      "volume": "10",
      "author": "Hatakeyama",
      "year": "2004",
      "journal-title": "RNA"
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    {
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      "first-page": "677",
      "DOI": "10.1128/JVI.79.2.677-683.2005",
      "article-title": "Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp",
      "volume": "79",
      "author": "Cevallos",
      "year": "2005",
      "journal-title": "J. Virol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "856",
      "DOI": "10.1016/j.jmb.2007.04.076",
      "article-title": "Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes",
      "volume": "370",
      "author": "Pfingsten",
      "year": "2007",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib25",
      "doi-asserted-by": "crossref",
      "first-page": "465",
      "DOI": "10.1016/j.cell.2004.08.001",
      "article-title": "Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor",
      "volume": "118",
      "author": "Spahn",
      "year": "2004",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib26",
      "doi-asserted-by": "crossref",
      "first-page": "1255",
      "DOI": "10.1261/rna.987808",
      "article-title": "RNA structure-based ribosome recruitment: lessons from the Dicistroviridae intergenic region IRESes",
      "volume": "14",
      "author": "Pfingsten",
      "year": "2008",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib27",
      "doi-asserted-by": "crossref",
      "first-page": "1959",
      "DOI": "10.1126/science.1058409",
      "article-title": "Hepatitis C virus IRES RNA-induced changes in the conformation of the 40 S ribosomal subunit",
      "volume": "291",
      "author": "Spahn",
      "year": "2001",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib28",
      "doi-asserted-by": "crossref",
      "first-page": "1008",
      "DOI": "10.1038/sj.emboj.7600102",
      "article-title": "Domain movements of elongation factor eEF2 and the eukaryotic 80 S ribosome facilitate tRNA translocation",
      "volume": "23",
      "author": "Spahn",
      "year": "2004",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib29",
      "doi-asserted-by": "crossref",
      "first-page": "1514",
      "DOI": "10.1093/nar/gkl1121",
      "article-title": "Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site",
      "volume": "35",
      "author": "Nishiyama",
      "year": "2007",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib30",
      "doi-asserted-by": "crossref",
      "first-page": "4632",
      "DOI": "10.1091/mbc.E06-06-0478",
      "article-title": "Initiation of protein synthesis by hepatitis C virus is refractory to reduced eIF2.GTP.Met-tRNAiMet ternary complex availability",
      "volume": "17",
      "author": "Robert",
      "year": "2006",
      "journal-title": "Mol. Biol. Cell"
    },
    {
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      "first-page": "906",
      "DOI": "10.1038/sj.embor.7400240",
      "article-title": "Position of the CrPV IRES on the 40 S subunit and factor dependence of IRES/80 S ribosome assembly",
      "volume": "5",
      "author": "Pestova",
      "year": "2004",
      "journal-title": "EMBO Rep."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib32",
      "article-title": "Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures",
      "author": "Kieft",
      "year": "2008",
      "journal-title": "Virus Res"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib33",
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      "first-page": "2710",
      "DOI": "10.1093/emboj/19.11.2710",
      "article-title": "Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80 S ribosome at 17.5\u00a0\u00c5 resolution",
      "volume": "19",
      "author": "Gomez-Lorenzo",
      "year": "2000",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib34",
      "doi-asserted-by": "crossref",
      "first-page": "348",
      "DOI": "10.1016/j.molcel.2008.03.012",
      "article-title": "Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation",
      "volume": "30",
      "author": "Fei",
      "year": "2008",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib35",
      "doi-asserted-by": "crossref",
      "first-page": "123",
      "DOI": "10.1016/S0092-8674(03)00476-8",
      "article-title": "Locking and unlocking of ribosomal motions",
      "volume": "114",
      "author": "Valle",
      "year": "2003",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib36",
      "doi-asserted-by": "crossref",
      "first-page": "318",
      "DOI": "10.1038/35018597",
      "article-title": "A ratchet-like inter-subunit reorganization of the ribosome during translocation",
      "volume": "406",
      "author": "Frank",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib37",
      "doi-asserted-by": "crossref",
      "first-page": "113",
      "DOI": "10.1016/S0092-8674(03)00478-1",
      "article-title": "Peptidyl-tRNA regulates the GTPase activity of translation factors",
      "volume": "114",
      "author": "Zavialov",
      "year": "2003",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib38",
      "doi-asserted-by": "crossref",
      "first-page": "7770",
      "DOI": "10.1074/jbc.M610887200",
      "article-title": "Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site",
      "volume": "282",
      "author": "Yamamoto",
      "year": "2007",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib39",
      "doi-asserted-by": "crossref",
      "first-page": "6048",
      "DOI": "10.1093/nar/gki910",
      "article-title": "Function of the ribosomal E-site: a mutagenesis study",
      "volume": "33",
      "author": "Sergiev",
      "year": "2005",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib40",
      "doi-asserted-by": "crossref",
      "first-page": "3933",
      "DOI": "10.1002/j.1460-2075.1989.tb08574.x",
      "article-title": "Binding of the 3\u2032 terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation",
      "volume": "8",
      "author": "Lill",
      "year": "1989",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib41",
      "doi-asserted-by": "crossref",
      "first-page": "8885",
      "DOI": "10.1021/bi00027a041",
      "article-title": "Interaction of human immunodeficiency virus type 1 Tat-derived peptides with TAR RNA",
      "volume": "34",
      "author": "Long",
      "year": "1995",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib42",
      "doi-asserted-by": "crossref",
      "first-page": "1277",
      "DOI": "10.1017/S1355838299991057",
      "article-title": "Probing the TRAP-RNA interaction with nucleoside analogs",
      "volume": "5",
      "author": "Elliott",
      "year": "1999",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib43",
      "doi-asserted-by": "crossref",
      "first-page": "45",
      "DOI": "10.1016/j.cell.2004.06.012",
      "article-title": "Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2",
      "volume": "118",
      "author": "Marquez",
      "year": "2004",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib44",
      "doi-asserted-by": "crossref",
      "first-page": "613",
      "DOI": "10.1016/j.molcel.2005.10.007",
      "article-title": "Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome",
      "volume": "20",
      "author": "McGarry",
      "year": "2005",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib45",
      "doi-asserted-by": "crossref",
      "first-page": "135",
      "DOI": "10.1101/sqb.2001.66.135",
      "article-title": "Features and functions of the ribosomal E site",
      "volume": "66",
      "author": "Blaha",
      "year": "2001",
      "journal-title": "Cold Spring Harbor Symp. Quant. Biol."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib46",
      "doi-asserted-by": "crossref",
      "first-page": "4527",
      "DOI": "10.1002/j.1460-2075.1990.tb07904.x",
      "article-title": "Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site",
      "volume": "9",
      "author": "Geigenmuller",
      "year": "1990",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib47",
      "doi-asserted-by": "crossref",
      "first-page": "1013",
      "DOI": "10.1016/j.biochi.2006.02.009",
      "article-title": "Decoding errors and the involvement of the E-site",
      "volume": "88",
      "author": "Nierhaus",
      "year": "2006",
      "journal-title": "Biochimie"
    },
    {
      "key": "10.1016/j.jmb.2009.01.042_bib48",
      "doi-asserted-by": "crossref",
      "first-page": "481",
      "DOI": "10.1016/S0076-6879(88)64064-X",
      "article-title": "Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension",
      "volume": "164",
      "author": "Stern",
      "year": "1988",
      "journal-title": "Methods Enzymol."
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