Crossref journal-article
Elsevier BV
Journal of Molecular Biology (78)
Bibliography

Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., & Jones, D. T. (2004). Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life. Journal of Molecular Biology, 337(3), 635–645.

Authors 5
  1. J.J. Ward (first)
  2. J.S. Sodhi (additional)
  3. L.J. McGuffin (additional)
  4. B.F. Buxton (additional)
  5. D.T. Jones (additional)
References 37 Referenced 1,728
  1. 10.1021/bi971952t / Biochemistry / The C-terminal half of the anti-sigma factor FlgM contains a dynamic equilibrium solution structure favoring helical conformations by Daughdrill (1998)
  2. 10.1006/jmbi.1999.3110 / J. Mol. Biol. / Intrinsically unstructured proteins: re-assessing the protein structure–function paradigm by Wright (1999)
  3. 10.1038/347575a0 / Nature / Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA by Weiss (1990)
  4. 10.1021/bi012159+ / Biochemistry / Intrinsic disorder and protein function by Dunker (2002)
  5. {'key': '10.1016/j.jmb.2004.02.002_BIB5', 'first-page': '90', 'article-title': 'Identifying disordered regions in proteins from amino acid sequences', 'author': 'Romero', 'year': '1997', 'journal-title': 'Proc. IEEE Int. Conf. Neural Netw.'} / Proc. IEEE Int. Conf. Neural Netw. / Identifying disordered regions in proteins from amino acid sequences by Romero (1997)
  6. {'key': '10.1016/j.jmb.2004.02.002_BIB6', 'first-page': '30', 'article-title': 'Predicting protein disorder for N-, C-, and internal regions', 'volume': '10', 'author': 'Li', 'year': '1999', 'journal-title': 'Genome Inform.'} / Genome Inform. / Predicting protein disorder for N-, C-, and internal regions by Li (1999)
  7. 10.1002/1097-0134(20010101)42:1<38::AID-PROT50>3.0.CO;2-3 / Proteins: Struct. Funct. Genet. / Sequence complexity and disordered proteins by Romero (2001)
  8. 10.1038/nbt0901-805 / Nature Biotechnol. / The protein trinity—linking function and disorder by Dunker (2001)
  9. 10.1002/prot.10533 / Proteins: Struct. Funct. Genet. / Evaluation of disorder predictions in CASP5 by Melamud (2003)
  10. 10.1002/prot.10437 / Proteins: Struct. Funct. Genet. / Flavors of protein disorder by Vucetic (2003)
  11. {'key': '10.1016/j.jmb.2004.02.002_BIB11', 'first-page': '161', 'article-title': 'Intrinsic protein disorder in complete genomes', 'volume': '11', 'author': 'Dunker', 'year': '2000', 'journal-title': 'Genome Inform.'} / Genome Inform. / Intrinsic protein disorder in complete genomes by Dunker (2000)
  12. 10.1038/75556 / Nature Genet. / Gene ontology: tool for the unification of biology (2000)
  13. 10.1093/nar/28.1.235 / Nucl. Acids Res. / The protein data bank by Berman (2000)
  14. 10.1093/emboj/cdf538 / EMBO J. / Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex by Mazza (2002)
  15. 10.1016/S0959-440X(02)00289-0 / Curr. Opin. Struct. Biol. / Coupling of folding and binding for unstructured proteins by Dyson (2002)
  16. 10.1101/gr.180801 / Genome Res. / Creating the gene ontology resource: design and implementation (2001)
  17. 10.1093/nar/30.1.69 / Nucl. Acids Res. / Saccharomyces genome database (SGD) provides secondary annotation using the gene ontology (GO) by Dwight (2002)
  18. 10.1006/jmbi.1993.1413 / J. Mol. Biol. / Prediction of protein secondary structure at better than 70% accuracy by Rost (1993)
  19. {'key': '10.1016/j.jmb.2004.02.002_BIB19', 'series-title': 'Methods in Molecular Biology', 'first-page': '71', 'article-title': 'Third generation prediction of secondary structures', 'author': 'Rost', 'year': '2000'} / Methods in Molecular Biology / Third generation prediction of secondary structures by Rost (2000)
  20. 10.1002/1097-0134(20001115)41:3<415::AID-PROT130>3.0.CO;2-7 / Proteins: Struct. Funct. Genet. / Why are “natively unfolded” proteins unstructured under physiologic conditions? by Uversky (2000)
  21. 10.1038/31159 / Nature / Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence by Cole (1998)
  22. 10.1016/S0022-2836(02)00969-5 / J. Mol. Biol. / Intrinsic disorder in cell-signalling and cancer-associated proteins by Iakoucheva (2002)
  23. 10.1006/bbrc.2001.4627 / Biochem. Biophys. Res. Commun. / Regulation of the cell cycle at the G1-S transition by proteolysis of cyclin E and p27Kip1 by Nakayama (2001)
  24. 10.1128/MCB.19.8.5601 / Mol. Cell. Biol. / Role of secondary structure in discrimination between constitutive and inducible activators by Parker (1999)
  25. 10.1016/S0304-3835(02)00511-6 / Cancer Letters / Epigenetic gene silencing in cancer initiation and progression by Nephew (2003)
  26. 10.1038/85798 / Nature Genet. / DNA double-strand breaks: signaling, repair and the cancer connection by Khanna (2001)
  27. 10.1006/jmbi.1999.2661 / J. Mol. Biol. / The relationship between structure and function: a comprehensive survey with application to the yeast genome by Hegyi (1999)
  28. 10.1002/prot.10528 / Proteins: Struct. Funct. Genet. / Prediction of disordered regions in proteins from position specific scoring matrices by Jones (2003)
  29. {'year': '1998', 'series-title': 'Statistical Learning Theory', 'author': 'Vapnik', 'key': '10.1016/j.jmb.2004.02.002_BIB29'} / Statistical Learning Theory by Vapnik (1998)
  30. {'key': '10.1016/j.jmb.2004.02.002_BIB30', 'series-title': 'Advances in Kernel Methods—Support Vector Learning', 'article-title': 'Making large-scale SVM learning practical', 'author': 'Joachims', 'year': '1999'} / Advances in Kernel Methods—Support Vector Learning / Making large-scale SVM learning practical by Joachims (1999)
  31. {'key': '10.1016/j.jmb.2004.02.002_BIB31', 'article-title': 'Combining statistical learning with a knowledge-based approach—a case study in intensive care monitoring', 'author': 'Morik', 'year': '1999', 'journal-title': 'Int. Conf. Mach. Learn. (ICML)'} / Int. Conf. Mach. Learn. (ICML) / Combining statistical learning with a knowledge-based approach—a case study in intensive care monitoring by Morik (1999)
  32. 10.1093/nar/25.17.3389 / Nucl. Acids Res. / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
  33. 10.1006/jmbi.1999.3091 / J. Mol. Biol. / Protein secondary structure prediction based on position-specific scoring matrices by Jones (1999)
  34. 10.1148/radiology.143.1.7063747 / Radiology / The meaning and use of the area under a receiver operating characteristic (ROC) curve by Hanley (1982)
  35. 10.1148/radiology.148.3.6878708 / Radiology / A method of comparing the areas under receiver operating characteristic curves derived from the same cases by Hanley (1983)
  36. 10.1002/prot.10532 / Proteins: Struct. Funct. Genet. / Predicting intrinsic disorder from amino acid sequence by Obradvic (2003)
  37. 10.1016/S0968-0004(01)02039-4 / Trends Biochem. Sci. / Getting the most from PSI-BLAST by Jones (2002)
Dates
Type When
Created 21 years, 6 months ago (Feb. 23, 2004, 3:13 p.m.)
Deposited 1 year, 5 months ago (March 11, 2024, 6:05 p.m.)
Indexed 3 days, 1 hour ago (Aug. 22, 2025, 12:46 a.m.)
Issued 21 years, 5 months ago (March 1, 2004)
Published 21 years, 5 months ago (March 1, 2004)
Published Print 21 years, 5 months ago (March 1, 2004)
Funders 1
  1. Medical Research Council 10.13039/501100000265

    Region: Europe

    gov (National government)

    Labels3
    1. Medical Research Council (United Kingdom)
    2. UK Medical Research Council
    3. MRC

@article{Ward_2004, title={Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life}, volume={337}, ISSN={0022-2836}, url={http://dx.doi.org/10.1016/j.jmb.2004.02.002}, DOI={10.1016/j.jmb.2004.02.002}, number={3}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Ward, J.J. and Sodhi, J.S. and McGuffin, L.J. and Buxton, B.F. and Jones, D.T.}, year={2004}, month=mar, pages={635–645} }