DOI: 10.1016/j.jim.2007.07.015. Validation of peptide epitope microarray experiments and extraction of quality data

Validation of peptide epitope microarray experiments and extraction of quality data

10.1016/j.jim.2007.07.015

Crossref journal-article

Elsevier BV

Journal of Immunological Methods (78)

Bibliography

Nahtman, T., Jernberg, A., Mahdavifar, S., Zerweck, J., Schutkowski, M., Maeurer, M., & Reilly, M. (2007). Validation of peptide epitope microarray experiments and extraction of quality data. Journal of Immunological Methods, 328(1â2), 1â13.

Authors 7

Tatjana Nahtman (first)
Alexander Jernberg (additional)
Shahnaz Mahdavifar (additional)
Johannes Zerweck (additional)
Mike Schutkowski (additional)
Markus Maeurer (additional)
Marie Reilly (additional)

References 21 Referenced 59

10.1128/IAI.68.6.3314-3321.2000 / Infect. Immun. / Antigenic equivalence of human T cell responses to Mycobacterium tuberculosis-specific RD1-encoded protein antigens ESAT-6 and culture filtrate protein 10 and to mixtures of synthetic peptides by Arend (2000)
10.1126/science.284.5419.1520 / Science / Comparative genomics of BCG vaccines by whole-genome DNA microarray by Behr (1999)
10.1099/00221287-144-11-3195 / Microbiology / A Mycobacterium tuberculosis operon encoding ESAT-6 and a novel low-molecular-mass culture filtrate protein (CFP-10) by Berthet (1998)
10.1073/pnas.0404347101 / Proc. Natl. Acad. Sci. USA. / Mycobacterium tuberculosis (Mtb) isocitrate dehydrogenases show strong B cell response and distinguish vaccinated controls from TB patients by Banerjee (2004)
10.1016/S0040-4020(01)85612-X / Tetrahedron, / Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support by Frank (1992)
10.1038/nm0896-893 / Nat. Med. / Immunogenicity and protective efficacy of a tuberculosis DNA vaccine by Huygen (1996)
10.1093/biostatistics/4.2.249 / Biostatistics, 4, / Exploration, normalization, and summaries of high density oligonucleotide array probe level data by Irizarry (2003)
10.1128/IAI.62.9.3679-3687.1994 / Infect. Immun. / T-cell epitope mapping of the major secreted mycobacterial antigen Ag85A in tuberculosis and leprosy by Launois (1994)
10.1128/IAI.66.8.3936-3940.1998 / Infection and Immunity / Heterogenous antibody responses in tuberculosis by Lyashchenko (1998)
10.1089/10665270050514954 / J. Comput. Biol. / Analysis of variance for gene expression microarray data by Kerr (2000)
{'key': '10.1016/j.jim.2007.07.015_bib8', 'series-title': 'Generalized, Linear and Mixed Models', 'author': 'McCulloch', 'year': '2001'} / Generalized, Linear and Mixed Models by McCulloch (2001)
10.1016/S0022-1759(96)00216-5 / J.Immunol. Methods / Statistical analysis of highly skewed immune response data by McGuinness (1997)
10.1111/j.1574-6968.1999.tb13722.x / FEMS Microbiol Lett. / Identification of novel immunogenic Mycobacterium tuberculosis peptides that stimulate mononuclear cells from immune donors by Moran (1999)
10.1128/IAI.68.7.3933-3940.2000 / Infection and Immunity / Identification and HLA restriction of naturally derived Th1-cell eptiopes from the secreted Mycobacterium tuberculosis Antigen 85B recognized by antigen-specific human CD4+ T-cell lines by Mustafa (2000)
10.1128/JVI.77.20.11125-11138.2003 / J. Virol. / Microarray profiling of antibody responses against simian-human immunodeficiency virus: postchallenge convergence of reactivities independent of host histocompatibility type and vaccine regimen by Neuman de Vegvar (2003)
10.1111/j.1365-3083.1995.tb03589.x / Scand. J. Immunol., / Characterization of the gene encoding the MPB51, one of he major secreted protein antigens of Mycobacterium bovis BCG and identification of the secreted protein closely related to the fibronectin binding 85 complex by Ohara (1995)
10.1073/pnas.0404848101 / PNAS. / Functional immunomics: Microarray analysis of IgG autoantibody repertoires predicts the future response of mice to induced diabetes by Quintana (2004)
10.1128/IAI.70.10.5446-5453.2002 / Infect. Immun. / Epitope mapping of the immunodominant antigen TB10.4 and the two homologous proteins TB10.3 and TB12.9, which constitute a submfamily of the esat-6 gene family by Skjot (2002)
10.1002/1097-0282(2000)55:3<188::AID-BIP20>3.0.CO;2-T / Biopolymers by Wenschuh (2000)
10.1089/106652701753307520 / J. Comput. Biol. / Assessing gene significance from cDNA microarray expression data via mixed models by Wolfinger (2001)
10.1093/nar/30.4.e15 / Nucleic Acids Research / Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation by Yang (2002)

Dates

Type	When
Created	18 years ago (Aug. 14, 2007, 7:23 a.m.)
Deposited	5 years, 4 months ago (April 25, 2020, 5:11 p.m.)
Indexed	4 months, 2 weeks ago (April 10, 2025, 8:47 a.m.)
Issued	17 years, 8 months ago (Dec. 1, 2007)
Published	17 years, 8 months ago (Dec. 1, 2007)
Published Print	17 years, 8 months ago (Dec. 1, 2007)

Funders 0

None

BibTeX

@article{Nahtman_2007, title={Validation of peptide epitope microarray experiments and extraction of quality data}, volume={328}, ISSN={0022-1759}, url={http://dx.doi.org/10.1016/j.jim.2007.07.015}, DOI={10.1016/j.jim.2007.07.015}, number={1–2}, journal={Journal of Immunological Methods}, publisher={Elsevier BV}, author={Nahtman, Tatjana and Jernberg, Alexander and Mahdavifar, Shahnaz and Zerweck, Johannes and Schutkowski, Mike and Maeurer, Markus and Reilly, Marie}, year={2007}, month=dec, pages={1–13} }

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