DOI: 10.1016/j.compbiolchem.2003.11.003. Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern

Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern

10.1016/j.compbiolchem.2003.11.003

Crossref journal-article

Elsevier BV

Computational Biology and Chemistry (78)

Bibliography

Inoue, Y., Ikeda, M., & Shimizu, T. (2004). Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. Computational Biology and Chemistry, 28(1), 39â49.

Authors 3

Yasuhito Inoue (first)
Masami Ikeda (additional)
Toshio Shimizu (additional)

References 32 Referenced 24

10.1126/science.287.5461.2185 / Science / The genome sequence of Drosophila melanogaster by Adams (2000)
10.1093/nar/25.17.3389 / Nucleic Acids Res. / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
10.1126/science.1072104 / Science / Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes by Aparicio (2002)
10.1093/nar/30.1.276 / Nucleic. Acids Res. / The Pfam protein families database by Bateman (2002)
10.1093/nar/gkg095 / Nucleic Acids Res. / The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 by Boeckmann (2003)
10.1046/j.1432-1033.2002.02859.x / Eur. J. Biochem. / Identification of novel membrane proteins by searching for patterns in hydropathy profiles by Clements (2002)
10.1016/S0896-6273(00)81093-4 / Neuron / A novel family of divergent seven-transmembrane proteins: candidate odorant receptors in Drosophila by Clyne (1999)
10.1126/science.1080049 / Science / The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins by Dehal (2002)
10.1038/nature01097 / Nature / Genome sequence of the human malaria parasite Plasmodium falciparum by Gardner (2002)
10.1093/bioinformatics/14.4.378 / Bioinformatics / SOSUI: classification and secondary structure prediction system for membrane proteins by Hirokawa (1998)
10.1126/science.1076181 / Science / The genome sequence of the malaria mosquito Anapheles gambiae by Holt (2002)
10.1093/nar/gkg103 / Nucleic Acids Res. / GPCRDB information system for G protein-coupled receptors by Horn (2003)
10.1093/bioinformatics/18.1.147 / Bioinformatics / Classifying G-protein coupled receptors with support vector machines by Karchin (2002)
10.1006/jmbi.2000.4315 / J. Mol. Biol. / Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes by Krogh (2001)
10.1038/35057062 / Nature / Initial sequencing and analysis of the human genome by Lander (2001)
Lao, D.M., Shimizu, T., 2001. A method for discriminating a signal peptide and a putative 1st transmembrane segment. In: Valafar, F. (Ed.), Proceedings of 2001 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS ’01). CSREA Press, Las Vegas, pp. 119–125.
10.1093/bioinformatics/18.12.1562 / Bioinformatics / The presence of signal peptide significantly affects transmembrane topology prediction by Lao (2002)
{'key': '10.1016/j.compbiolchem.2003.11.003_BIB18', 'first-page': '485', 'article-title': 'Evaluating transmembrane topology prediction methods for the effect of signal peptide in topology prediction', 'volume': '2', 'author': 'Lao', 'year': '2002', 'journal-title': 'In Silico Biol.'} / In Silico Biol. / Evaluating transmembrane topology prediction methods for the effect of signal peptide in topology prediction by Lao (2002)
10.1093/bioinformatics/16.4.404 / Bioinformatics / The PSIPRED protein structure prediction server by McGuffin (2000)
Nielsen, H., Krogh, A., 1998. Prediction of signal peptides and signal anchors by a hidden Markov model. In: Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D., Sensen, C. (Eds.), Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 122–130.
10.1006/jtbi.2001.2272 / J. Theor. Biol. / Length analyses of mammalian G-protein-coupled receptors by Otaki (2001)
Poluliakh, N., Saito, K., Shimizu, T., 2000. Transmembrane topology pattern and detection of transmembrane protein functions. In: Dunker, A.K., Konagaya, A., Miyano, S., Takagi, T. (Eds.), Genome Informatics 2000. Universal Academy Press, Tokyo, pp. 334–335.
10.1101/gr.GR-1491R / Genome Res. / Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs by Remm (2000)
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10.1093/protein/gzg068 / Protein Eng. / Identification of transmembrane protein functions by binary topology patterns by Sugiyama (2003)
10.1016/S0014-5793(02)02775-8 / FEBS Lett. / Identification of G protein-coupled receptor genes from the human genome sequence by Takeda (2002)
The C. elegans Sequencing Consortium, 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012–2018. (10.1126/science.282.5396.2012)
10.1038/35048500 / Nature / Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana by Theologis (2000)
10.1016/S0014-5793(96)01478-0 / FEBS Lett. / Membrane topology distinguishes a subfamily of the ATP-binding cassette (ABC) transporters by Tusnády (1997)
10.1006/jmbi.1998.2107 / J. Mol. Biol. / Principles governing amino acid composition of integral membrane proteins: application to topology prediction by Tusnády (1998)
10.1093/bioinformatics/17.9.849 / Bioinformatics / The HMMTOP transmembrane topology prediction server by Tusnády (2001)
10.1016/S0092-8674(00)80582-6 / Cell / A spatial map of olfactory receptor expression in the Drosophila antenna by Vosshall (1999)

Dates

Type	When
Created	21 years, 7 months ago (Jan. 30, 2004, 5:15 a.m.)
Deposited	3 years, 1 month ago (July 12, 2022, 9:37 p.m.)
Indexed	6 months, 2 weeks ago (Feb. 21, 2025, 6:23 a.m.)
Issued	21 years, 7 months ago (Feb. 1, 2004)
Published	21 years, 7 months ago (Feb. 1, 2004)
Published Print	21 years, 7 months ago (Feb. 1, 2004)

Funders 1

Ministry of Education, Culture, Sports, Science and Technology 10.13039/501100001700
Region: Asia
gov (National government)
Labels3
1. Monbu-kagaku-shō
2. 文部科学省
3. MEXT

BibTeX

@article{Inoue_2004, title={Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern}, volume={28}, ISSN={1476-9271}, url={http://dx.doi.org/10.1016/j.compbiolchem.2003.11.003}, DOI={10.1016/j.compbiolchem.2003.11.003}, number={1}, journal={Computational Biology and Chemistry}, publisher={Elsevier BV}, author={Inoue, Yasuhito and Ikeda, Masami and Shimizu, Toshio}, year={2004}, month=feb, pages={39–49} }

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