10.1016/j.cbpa.2008.08.037
Crossref journal-article
Elsevier BV
Current Opinion in Chemical Biology (78)
Bibliography

Korostelev, A., Ermolenko, D. N., & Noller, H. F. (2008). Structural dynamics of the ribosome. Current Opinion in Chemical Biology, 12(6), 674–683.

Authors 3
  1. Andrei Korostelev (first)
  2. Dmitri N Ermolenko (additional)
  3. Harry F Noller (additional)
References 62 Referenced 143
  1. 10.1146/annurev.biochem.66.1.679 / Annu Rev Biochem / Ribosomes and translation by Green (1997)
  2. 10.1016/S0968-0004(03)00066-5 / Trends Biochem Sci / Insights into the decoding mechanism from recent ribosome structures by Ogle (2003)
  3. 10.1126/science.289.5481.905 / Science / The complete atomic structure of the large ribosomal subunit at 2.4Å resolution by Ban (2000)
  4. 10.1016/S1367-5931(99)80041-6 / Curr Opin Chem Biol / Boundaries for an RNA world by Yarus (1999)
  5. 10.1038/218675a0 / Nature / Translocation in protein synthesis: a hybrid structure model by Bretscher (1968)
  6. 10.1101/SQB.1969.034.01.026 / Cold Spring Harb Symp Quant Biol / A model of the functioning ribosome: locking and unlocking of the ribosome subparticles by Spirin (1969)
  7. 10.1038/342142a0 / Nature / Intermediate states in the movement of transfer RNA in the ribosome by Moazed (1989)
  8. 10.1016/0022-2836(87)90720-0 / J Mol Biol / Translocation makes the ribosome less compact by Spirin (1987)
  9. 10.1016/S0079-6603(08)60346-3 / Prog Nucleic Acid Res Mol Biol / Ribosomal translocation: facts and models by Spirin (1985)
  10. 10.1038/35018597 / Nature / A ratchet-like inter-subunit reorganization of the ribosome during translocation by Frank (2000)
  11. 10.1016/S0092-8674(03)00427-6 / Cell / Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement by Gao (2003)
  12. 10.1016/S0092-8674(03)00476-8 / Cell / Locking and unlocking of ribosomal motions by Valle (2003)
  13. 10.1073/pnas.0700762104 / Proc Natl Acad Sci U S A / Intersubunit movement is required for ribosomal translocation by Horan (2007)
  14. 10.1016/j.jmb.2007.04.042 / J Mol Biol / Observation of intersubunit movement of the ribosome in solution using FRET by Ermolenko (2007)
  15. 10.1038/nsmb1243 / Nat Struct Mol Biol / The antibiotic viomycin traps the ribosome in an intermediate state of translocation by Ermolenko (2007)
  16. 10.1073/pnas.0403884101 / Proc Natl Acad Sci U S A / tRNA dynamics on the ribosome during translation by Blanchard (2004)
  17. 10.1529/biophysj.107.109884 / Biophys J / Fluctuations of tRNAs between classical and hybrid states by Kim (2007)
  18. 10.1016/j.molcel.2007.01.022 / Mol Cell / Identification of two distinct hybrid state intermediates on the ribosome by Munro (2007)
  19. 10.1016/j.molcel.2008.05.004 / Mol Cell / Spontaneous intersubunit rotation in single ribosomes by Cornish (2008)
  20. 10.1261/rna.601507 / RNA / Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome by Spiegel (2007)
  21. 10.1016/j.cell.2005.03.023 / Cell / The cryo-EM structure of a translation initiation complex from Escherichia coli by Allen (2005)
  22. 10.1038/nature02332 / Nature / Visualization of release factor 3 on the ribosome during termination of protein synthesis by Klaholz (2004)
  23. 10.1016/j.cell.2007.03.050 / Cell / RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors by Gao (2007)
  24. 10.1016/j.molcel.2005.05.005 / Mol Cell / Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies by Gao (2005)
  25. 10.1038/sj.emboj.7600102 / EMBO J / Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation by Spahn (2004)
  26. 10.1038/sj.emboj.7601677 / EMBO J / Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation by Taylor (2007)
  27. 10.1126/science.1117230 / Science / Structures of the bacterial ribosome at 3.5Å resolution by Schuwirth (2005)
  28. 10.1016/j.molcel.2007.01.027 / Mol Cell / Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors by Connell (2007)
  29. 10.1073/pnas.0607541103 / Proc Natl Acad Sci U S A / Structural basis for mRNA and tRNA positioning on the ribosome by Berk (2006)
  30. 10.1038/nature07115 / Nature / Structural basis for translation termination on the 70S ribosome by Laurberg (2008)
  31. 10.1126/science.1131127 / Science / Structure of the 70S ribosome complexed with mRNA and tRNA by Selmer (2006)
  32. 10.1016/j.molcel.2007.03.018 / Mol Cell / The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome by Passmore (2007)
  33. 10.1016/S0092-8674(01)00546-3 / Cell / High resolution structure of the large ribosomal subunit from a mesophilic eubacterium by Harms (2001)
  34. 10.1016/j.cell.2006.08.032 / Cell / Crystal structure of a 70S ribosome–tRNA complex reveals functional interactions and rearrangements by Korostelev (2006)
  35. 10.1126/science.1060089 / Science / Crystal structure of the ribosome at 5.5Å resolution by Yusupov (2001)
  36. 10.1073/pnas.1632476100 / Proc Natl Acad Sci U S A / Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy by Tama (2003)
  37. 10.1529/biophysj.104.058495 / Biophys J / Exploring global motions and correlations in the ribosome by Trylska (2005)
  38. 10.1016/j.jsb.2004.01.005 / J Struct Biol / Global ribosome motions revealed with elastic network model by Wang (2004)
  39. 10.1016/j.molcel.2008.03.012 / Mol Cell / Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation by Fei (2008)
  40. 10.1016/j.cell.2005.04.015 / Cell / Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation by Diaconu (2005)
  41. 10.1515/BC.2000.050 / Biol Chem / GTPases mechanisms and functions of translation factors on the ribosome by Rodnina (2000)
  42. 10.1038/nature05281 / Nature / Structural basis for messenger RNA movement on the ribosome by Yusupova (2006)
  43. 10.1016/j.cell.2005.09.039 / Cell / Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon by Petry (2005)
  44. 10.1093/emboj/cdf326 / EMBO J / Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process by Valle (2002)
  45. 10.1111/j.1432-1033.1975.tb02294.x / Eur J Biochem / Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3′-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome by Shine (1975)
  46. 10.1016/j.jmb.2007.08.054 / J Mol Biol / Analysis of structural dynamics in the ribosome by TLS crystallographic refinement by Korostelev (2007)
  47. 10.1073/pnas.0707850104 / Proc Natl Acad Sci U S A / Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome by Korostelev (2007)
  48. 10.1093/nar/25.11.2083 / Nucleic Acids Res / Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition by Ramos (1997)
  49. 10.1093/emboj/20.15.4214 / EMBO J / The kink-turn: a new RNA secondary structure motif by Klein (2001)
  50. 10.1016/S1097-2765(00)00131-3 / Mol Cell / Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment by Vidovic (2000)
  51. 10.1016/j.str.2006.02.012 / Structure / RNA kink-turns as molecular elbows: hydration, cation binding, and large-scale dynamics by Razga (2006)
  52. 10.1261/rna.5176604 / RNA / The kink-turn motif in RNA is dimorphic, and metal ion-dependent by Goody (2004)
  53. 10.1261/rna.495207 / RNA / G-ribo motif favors the formation of pseudoknots in ribosomal by Steinberg (2007)
  54. 10.1016/j.molcel.2007.09.015 / Mol Cell / Stop codon recognition by release factors induces structural rearrangement of the ribosomal decoding center that is productive for peptide release by Youngman (2007)
  55. 10.1016/j.molcel.2006.08.011 / Mol Cell / Deletion of a conserved, central ribosomal intersubunit RNA bridge by Ali (2006)
  56. 10.1126/science.1057766 / Science / Crystal structure of an initiation factor bound to the 30S ribosomal subunit by Carter (2001)
  57. 10.1126/science.1060612 / Science / Recognition of cognate transfer RNA by the 30S ribosomal subunit by Ogle (2001)
  58. 10.1038/nature04152 / Nature / An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA by Schmeing (2005)
  59. 10.1261/rna.5120503 / RNA / Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit by Schmeing (2003)
  60. 10.1073/pnas.0400928101 / Proc Natl Acad Sci U S A / Heteronuclear NMR investigations of dynamic regions of intact Escherichia coli ribosomes by Christodoulou (2004)
  61. 10.1073/pnas.0708517104 / Proc Natl Acad Sci U S A / The process of mRNA–tRNA translocation by Frank (2007)
  62. 10.1038/35030006 / Nature / Structure of the 30S ribosomal subunit by Wimberly (2000)
Dates
Type When
Created 16 years, 10 months ago (Oct. 11, 2008, 2:55 p.m.)
Deposited 6 years, 8 months ago (Dec. 25, 2018, 12:30 a.m.)
Indexed 1 month, 1 week ago (July 26, 2025, 5:25 a.m.)
Issued 16 years, 9 months ago (Dec. 1, 2008)
Published 16 years, 9 months ago (Dec. 1, 2008)
Published Print 16 years, 9 months ago (Dec. 1, 2008)
Funders 0

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@article{Korostelev_2008, title={Structural dynamics of the ribosome}, volume={12}, ISSN={1367-5931}, url={http://dx.doi.org/10.1016/j.cbpa.2008.08.037}, DOI={10.1016/j.cbpa.2008.08.037}, number={6}, journal={Current Opinion in Chemical Biology}, publisher={Elsevier BV}, author={Korostelev, Andrei and Ermolenko, Dmitri N and Noller, Harry F}, year={2008}, month=dec, pages={674–683} }