DOI: 10.1016/j.bpj.2015.10.053. Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy

Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy

10.1016/j.bpj.2015.10.053

Crossref journal-article

Elsevier BV

Biophysical Journal (78)

Bibliography

Arnold, J., Mahamid, J., Lucic, V., deÂ Marco, A., Fernandez, J.-J., Laugks, T., Mayer, T., Hyman, A. A., Baumeister, W., & Plitzko, J. M. (2016). Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy. Biophysical Journal, 110(4), 860â869.

Authors 10

Jan Arnold (first)
Julia Mahamid (additional)
Vladan Lucic (additional)
Alex de Marco (additional)
Jose-Jesus Fernandez (additional)
Tim Laugks (additional)
Tobias Mayer (additional)
Anthony A. Hyman (additional)
Wolfgang Baumeister (additional)
Jürgen M. Plitzko (additional)

References 28 Referenced 208

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10.1017/S0033583500004297 / Q. Rev. Biophys. / Cryo-electron microscopy of vitrified specimens by Dubochet (1988)
10.1146/annurev.biochem.73.011303.074112 / Annu. Rev. Biochem. / Structural studies by electron tomography: from cells to molecules by Lucić (2005)
10.1016/j.jsb.2013.10.019 / J. Struct. Biol. / Practical workflow for cryo focused-ion-beam milling of tissues and cells for cryo-TEM tomography by Hsieh (2014)
10.1016/j.jsb.2015.07.012 / J. Struct. Biol. / A focused ion beam milling and lift-out approach for site-specific preparation of frozen-hydrated lamellas from multicellular organisms by Mahamid (2015)
10.1038/nmeth1014 / Nat. Methods / Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy by Marko (2007)
10.1016/j.jsb.2010.02.011 / J. Struct. Biol. / Micromachining tools and correlative approaches for cellular cryo-electron tomography by Rigort (2010)
10.1016/j.jsb.2008.07.003 / J. Struct. Biol. / Integrated fluorescence and transmission electron microscopy by Agronskaia (2008)
10.1016/j.jsb.2007.07.011 / J. Struct. Biol. / Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography by Sartori (2007)
10.1016/S0076-6879(10)81013-4 / Methods Enzymol. / Correlated light and electron cryo-microscopy by Briegel (2010)
10.1016/j.ultramic.2013.10.011 / Ultramicroscopy / High-precision correlative fluorescence and electron cryo microscopy using two independent alignment markers by Schellenberger (2014)
10.1016/j.ultramic.2013.10.015 / Ultramicroscopy / Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity by Schorb (2014)
10.1111/j.1365-2818.2007.01794.x / J. Microsc. / Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching by Schwartz (2007)
10.1016/j.ejcb.2009.07.002 / Eur. J. Cell Biol. / Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells by van Driel (2009)
10.1111/j.1365-2818.2009.03184.x / J. Microsc. / High-aperture cryogenic light microscopy by Le Gros (2009)
10.1017/S1431927610058186 / Microsc. Microanal. / A 360° rotatable cryo-FIB stage for micromachining frozen-hydrated specimens for cryo-electron tomography by Rigort (2010)
10.1016/j.jsb.2005.07.007 / J. Struct. Biol. / Automated electron microscope tomography using robust prediction of specimen movements by Mastronarde (2005)
10.1038/nmeth.2019 / Nat. Methods / Fiji: an open-source platform for biological-image analysis by Schindelin (2012)
10.1111/j.1365-2818.2006.01706.x / J. Microsc. / A guided tour into subcellular colocalization analysis in light microscopy by Bolte (2006)
Jones, E., T. Oliphant, and P. Peterson. 2001. SciPy: open source scientific tools for Python. http://www.scipy.org/.
10.1016/j.ultramic.2013.11.008 / Ultramicroscopy / Coordinate transformation based cryo-correlative methods for electron tomography and focused ion beam milling by Fukuda (2014)
Myronenko, A., and X. Song. 2009. On the closed-form solution of the rotation matrix arising in computer vision problems. Preprint, submitted April 9, 2009. http://arxiv.org/abs/0904.1613.
10.1109/34.88573 / IEEE Trans. Pattern Anal. Mach. Intell. / Least-squares estimation of transform parameters between two point patterns by Umeyama (1991)
10.1016/B978-0-12-416026-2.00013-3 / Methods Cell Biol. / Precise, correlated fluorescence microscopy and electron tomography of lowicryl sections using fluorescent fiducial markers by Kukulski (2012)
10.1073/pnas.1201333109 / Proc. Natl. Acad. Sci. USA / Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography by Rigort (2012)
10.1016/j.sbi.2013.08.006 / Curr. Opin. Struct. Biol. / Opening windows into the cell: focused-ion-beam milling for cryo-electron tomography by Villa (2013)
10.1021/nl501870p / Nano Lett. / Super-resolution microscopy using standard fluorescent proteins in intact cells under cryo-conditions by Kaufmann (2014)
10.1038/nmeth.2961 / Nat. Methods / Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography by Chang (2014)

Dates

Type	When
Created	9 years, 7 months ago (Jan. 5, 2016, 2 a.m.)
Deposited	6 years, 11 months ago (Sept. 16, 2018, 2:53 a.m.)
Indexed	2 weeks ago (Aug. 7, 2025, 5:03 a.m.)
Issued	9 years, 6 months ago (Feb. 1, 2016)
Published	9 years, 6 months ago (Feb. 1, 2016)
Published Print	9 years, 6 months ago (Feb. 1, 2016)

Funders 0

None

BibTeX

@article{Arnold_2016, title={Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy}, volume={110}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2015.10.053}, DOI={10.1016/j.bpj.2015.10.053}, number={4}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Arnold, Jan and Mahamid, Julia and Lucic, Vladan and de Marco, Alex and Fernandez, Jose-Jesus and Laugks, Tim and Mayer, Tobias and Hyman, Anthony A. and Baumeister, Wolfgang and Plitzko, Jürgen M.}, year={2016}, month=feb, pages={860–869} }

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}