Walking the Interactome for Prioritization of Candidate Disease Genes
10.1016/j.ajhg.2008.02.013
Crossref journal-article
Elsevier BV
The American Journal of Human Genetics (78)
Bibliography

Köhler, S., Bauer, S., Horn, D., & Robinson, P. N. (2008). Walking the Interactome for Prioritization of Candidate Disease Genes. The American Journal of Human Genetics, 82(4), 949–958.

Authors 4
  1. Sebastian Köhler (first)
  2. Sebastian Bauer (additional)
  3. Denise Horn (additional)
  4. Peter N. Robinson (additional)
References 44 Referenced 1,041
  1. 10.1093/nar/30.1.52 / Nucleic Acids Res. / Online mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders by Hamosh (2002)
  2. 10.1038/nrg1383 / Nat. Rev. Genet. / From syndrome families to functional genomics by Brunner (2004)
  3. 10.1126/science.1076641 / Science / Finding genes that underlie complex traits by Glazier (2002)
  4. 10.1038/ng1090 / Nat. Genet. / Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease by Botstein (2003)
  5. 10.1038/ng895 / Nat. Genet. / Association of genes to genetically inherited diseases using data mining by Perez-Iratxeta (2002)
  6. 10.1093/bioinformatics/18.suppl_2.S110 / Bioinformatics / A similarity-based method for genome-wide prediction of disease-relevant human genes by Freudenberg (2002)
  7. 10.1038/sj.ejhg.5200918 / Eur. J. Hum. Genet. / A new web-based data mining tool for the identification of candidate genes for human genetic disorders by van Driel (2003)
  8. 10.1186/gb-2003-4-11-r75 / Genome Biol. / POCUS: mining genomic sequence annotation to predict disease genes by Turner (2003)
  9. 10.1093/nar/gki296 / Nucleic Acids Res. / Integration of text- and data-mining using ontologies successfully selects disease gene candidates by Tiffin (2005)
  10. 10.1038/nbt1203 / Nat. Biotechnol. / Gene prioritization through genomic data fusion by Aerts (2006)
  11. 10.1086/504300 / Am. J. Hum. Genet. / Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes by Franke (2006)
  12. 10.1093/bioinformatics/btk031 / Bioinformatics / SUSPECTS: enabling fast and effective prioritization of positional candidates by Adie (2006)
  13. 10.1186/1471-2105-6-55 / BMC Bioinformatics / Speeding disease gene discovery by sequence based candidate prioritization by Adie (2005)
  14. 10.1093/nar/gkh605 / Nucleic Acids Res. / Genome-wide identification of genes likely to be involved in human genetic disease by López-Bigas (2004)
  15. 10.1016/j.cbpa.2006.10.005 / Curr. Opin. Chem. Biol. / The value of high quality protein-protein interaction networks for systems biology by Stelzl (2006)
  16. 10.1038/ng1747 / Nat. Genet. / Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets by Gandhi (2006)
  17. 10.1136/jmg.2006.041376 / J. Med. Genet. / Predicting disease genes using protein–protein interactions by Oti (2006)
  18. 10.1093/nar/gkl707 / Nucleic Acids Res. / Analysis of protein sequence and interaction data for candidate disease gene prediction by George (2006)
  19. 10.1093/nar/gkl993 / Nucleic Acids Res. / Entrez gene: gene-centered information at ncbi by Maglott (2007)
  20. 10.1093/nar/gkh070 / Nucleic Acids Res. / Human protein reference database as a discovery resource for proteomics by Peri (2004)
  21. 10.1093/nar/gki051 / Nucleic Acids Res. / The biomolecular interaction network database and related tools 2005 update by Alfarano (2005)
  22. 10.1093/nar/gkj109 / Nucleic Acids Res. / Biogrid: a general repository for interaction datasets by Stark (2006)
  23. 10.1093/nar/gkl958 / Nucleic Acids Res. / IntAct–open source resource for molecular interaction data by Kerrien (2007)
  24. 10.1093/nar/gkh086 / Nucleic Acids Res. / The database of interacting proteins: 2004 update by Salwinski (2004)
  25. 10.1093/nar/gki107 / Nucleic Acids Res. / Inparanoid: a comprehensive database of eukaryotic orthologs by O'Brien (2005)
  26. 10.1093/nar/gkl825 / Nucleic Acids Res. / STRING 7–recent developments in the integration and prediction of protein interactions by von Mering (2007)
  27. 10.1093/nar/gkg034 / Nucleic Acids Res. / STRING: a database of predicted functional associations between proteins by von Mering (2003)
  28. Can, T., Çamoǧlu, O., and Singh, A.K. (2005). Analysis of protein-protein interaction networks using random walks. In BIOKDD '05: Proceedings of the 5th international workshop on Bioinformatics (New York, USA: Association for Computing Machinery). 61–68. (10.1145/1134030.1134042)
  29. Kondor, R.I., and Lafferty, J.D. (2002). Diffusion kernels on graphs and other discrete input spaces. In ICML '02: Proceedings of the Nineteenth International Conference on Machine Learning. (San Francisco, CA, USA: Morgan Kaufmann Publishers Inc.), pp. 315–322.
  30. 10.1186/gb-2006-7-11-120 / Genome Biol. / How complete are current yeast and human protein-interaction networks? by Hart (2006)
  31. 10.1016/j.tig.2003.12.007 / Trends Genet. / Conservation of protein-protein interactions - lessons from ascomycota by Pagel (2004)
  32. 10.1083/jcb.108.1.191 / J. Cell Biol. / Cartilage contains mixed fibrils of collagen types ii, ix, and xi by Mendler (1989)
  33. 10.1038/nbt1295 / Nat. Biotechnol. / A human phenome-interactome network of protein complexes implicated in genetic disorders by Lage (2007)
  34. 10.1101/gr.737703 / Genome Res. / Genomic gene clustering analysis of pathways in eukaryotes by Lee (2003)
  35. 10.1056/NEJMe078114 / N. Engl. J. Med. / Network medicine–from obesity to the “diseasome” by Barabási (2007)
  36. 10.1016/j.cell.2006.03.032 / Cell / A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration by Lim (2006)
  37. 10.1038/ng2072 / Nat. Genet. / Loss of GLIS2 causes nephronophthisis in humans and mice by increased apoptosis and fibrosis by Attanasio (2007)
  38. 10.1086/521633 / Am. J. Hum. Genet. / A novel dominant mutation in plakoglobin causes arrhythmogenic right ventricular cardiomyopathy by Asimaki (2007)
  39. 10.1086/521953 / Am. J. Hum. Genet. / Mutations in TOPORS cause autosomal dominant retinitis pigmentosa with perivascular retinal pigment epithelium atrophy by Chakarova (2007)
  40. 10.1086/518426 / Am. J. Hum. Genet. / Recurrent mutation in the first zinc finger of the orphan nuclear receptor NR2E3 causes autosomal dominant retinitis pigmentosa by Coppieters (2007)
  41. 10.1038/ng2078 / Nat. Genet. / Germline gain-of-function mutations in RAF1 cause Noonan syndrome by Razzaque (2007)
  42. 10.1086/519697 / Am. J. Hum. Genet. / A new subtype of brachydactyly type B caused by point mutations in the bone morphogenetic protein antagonist NOGGIN by Lehmann (2007)
  43. 10.1086/518428 / Am. J. Hum. Genet. / Mutations in FGD4 encoding the Rho GDP/GTP exchange factor FRABIN cause autosomal recessive Charcot-Marie-Tooth type 4H by Delague (2007)
  44. 10.1101/gr.1239303 / Genome Res. / Cytoscape: a software environment for integrated models of biomolecular interaction networks by Shannon (2003)
Dates
Type When
Created 17 years, 4 months ago (April 2, 2008, 12:10 p.m.)
Deposited 6 years, 3 months ago (May 9, 2019, 4:24 p.m.)
Indexed 2 weeks, 4 days ago (Aug. 12, 2025, 5:26 p.m.)
Issued 17 years, 4 months ago (April 1, 2008)
Published 17 years, 4 months ago (April 1, 2008)
Published Print 17 years, 4 months ago (April 1, 2008)
Funders 0

None

@article{K_hler_2008, title={Walking the Interactome for Prioritization of Candidate Disease Genes}, volume={82}, ISSN={0002-9297}, url={http://dx.doi.org/10.1016/j.ajhg.2008.02.013}, DOI={10.1016/j.ajhg.2008.02.013}, number={4}, journal={The American Journal of Human Genetics}, publisher={Elsevier BV}, author={Köhler, Sebastian and Bauer, Sebastian and Horn, Denise and Robinson, Peter N.}, year={2008}, month=apr, pages={949–958} }