DOI: 10.1016/j.ab.2009.08.013. A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease

A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease

10.1016/j.ab.2009.08.013

Crossref journal-article

Elsevier BV

Analytical Biochemistry (78)

Bibliography

Bodenreider, C., Beer, D., Keller, T. H., Sonntag, S., Wen, D., Yap, L., Yau, Y. H., Shochat, S. G., Huang, D., Zhou, T., Caflisch, A., Su, X.-C., Ozawa, K., Otting, G., Vasudevan, S. G., Lescar, J., & Lim, S. P. (2009). A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease. Analytical Biochemistry, 395(2), 195â204.

Authors 17

Christophe Bodenreider (first)
David Beer (additional)
Thomas H. Keller (additional)
Sebastian Sonntag (additional)
Daying Wen (additional)
LiJian Yap (additional)
Yin Hoe Yau (additional)
Susana Geifman Shochat (additional)
Danzhi Huang (additional)
Ting Zhou (additional)
Amedeo Caflisch (additional)
Xun-Cheng Su (additional)
Kiyoshi Ozawa (additional)
Gottfried Otting (additional)
Subhash G. Vasudevan (additional)
Julien Lescar (additional)
Siew Pheng Lim (additional)

References 40 Referenced 93

10.1016/S1367-5931(97)80078-6 / Curr. Opin. Chem. Biol. / High-throughput screening: advances in assay technologies by Sittampalam (1997)
10.1016/S0958-1669(99)00051-8 / Curr. Opin. Biotechnol. / High-throughput and ultra-high-throughput screening: Solution- and cell-based approaches by Sundberg (2000)
10.1016/j.drudis.2006.05.014 / Drug Discov. Today / Screening in a spirit haunted world by Shoichet (2006)
10.1021/jm010533y / J. Med. Chem. / A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening by Mcgovern (2002)
10.1038/nprot.2006.77 / Nat. Protoc. / A detergent-based assay for the detection of promiscuous inhibitors by Feng (2006)
10.1021/jm0340896 / J. Med. Chem. / Effect of detergent on “promiscuous” inhibitors by Ryan (2003)
{'key': '10.1016/j.ab.2009.08.013_bib7', 'first-page': '58', 'article-title': 'Inhibition of the NS2B–NS3 protease: towards a causative therapy for dengue virus diseases', 'volume': '28', 'author': 'Katzenmeier', 'year': '2004', 'journal-title': 'Dengue Bull.'} / Dengue Bull. / Inhibition of the NS2B–NS3 protease: towards a causative therapy for dengue virus diseases by Katzenmeier (2004)
{'key': '10.1016/j.ab.2009.08.013_bib8', 'first-page': '1567', 'article-title': 'Strategies for the identification of inhibitors of West Nile virus and other flaviviruses', 'volume': '3', 'author': 'Shi', 'year': '2002', 'journal-title': 'Curr. Opin. Invest. Drugs'} / Curr. Opin. Invest. Drugs / Strategies for the identification of inhibitors of West Nile virus and other flaviviruses by Shi (2002)
10.1146/annurev.mi.44.100190.003245 / Annu. Rev. Microbiol. / Flavivirus genome organization, expression, and replication by Chambers (1990)
10.1128/JVI.67.4.2034-2042.1993 / J. Virol. / Deletion analysis of dengue virus type 4 nonstructural protein NS2B: Identification of a domain required for NS2B–NS3 protease activity by Falgout (1993)
10.1128/JVI.64.9.4364-4374.1990 / J. Virol. / In vitro processing of dengue virus type 2 nonstructural proteins NS2A, NS2B, and NS3 by Preugschat (1990)
10.1016/j.bbrc.2005.03.107 / Biochem. Biophys. Res. Commun. / Competitive inhibition of the dengue virus NS3 serine protease by synthetic peptides representing polyprotein cleavage sites by Chanprapaph (2005)
10.1021/jm0607606 / J. Med. Chem. / Peptide inhibitors of West Nile NS3 protease: SAR study of tetrapeptide aldehyde inhibitors by Knox (2006)
10.1099/vir.0.82735-0 / J. Gen. Virol. / Yellow fever virus NS3 protease: peptide-inhibition studies by Lohr (2007)
10.1016/j.bmcl.2005.09.049 / Bioorg. Med. Chem. Lett. / Peptide inhibitors of dengue virus NS3 protease: II. SAR study of tetrapeptide aldehyde inhibitors by Yin (2006)
10.1016/j.bmcl.2005.09.062 / Bioorg. Med. Chem. Lett. / Peptide inhibitors of dengue virus NS3 protease: I. Warhead by Yin (2006)
10.1042/BJ20051374 / Biochem. J. / Cleavage targets and the d-arginine-based inhibitors of the West Nile virus NS3 processing proteinase by Shiryaev (2006)
10.1016/j.bmc.2004.09.036 / Bioorg. Med. Chem. / Identification and characterization of nonsubstrate based inhibitors of the essential dengue and West Nile virus proteases by Ganesh (2005)
10.1089/adt.2007.101 / Assay Drug Dev. Technol. / HTS identifies novel and specific uncompetitive inhibitors of the two-component NS2B–NS3 proteinase of West Nile virus by Johnston (2007)
10.1128/AAC.01508-07 / Antimicrob. Agents Chemother. / Identification and biochemical characterization of small molecule inhibitors of West Nile virus serine protease by a high throughput screen by Mueller (2008)
10.1371/journal.pntd.0000356 / PLoS Negl. Trop. Dis. / Discovery of a non-peptidic inhibitor of West Nile virus NS3 protease by high-throughput docking by Ekonomiuk (2009)
10.1074/jbc.M500588200 / J. Biol. Chem. / Functional profiling of recombinant NS3 proteases from all four serotypes of dengue virus using tetrapeptide and octapeptide substrate libraries by Li (2005)
10.1006/abio.1998.2738 / Anal. Biochem. / Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: a thermodynamic study of ligand binding to protein tyrosine phosphatase 1B by Zhang (1998)
10.1021/jm991174y / J. Med. Chem. / Biosensor analysis of the interaction between immobilized human serum albumin and drug compounds for prediction of human serum albumin binding levels by Frostell-Karlsson (2000)
10.1002/(SICI)1099-1352(199909/10)12:5<279::AID-JMR473>3.0.CO;2-3 / J. Mol. Recognit. / Improving biosensor analysis by Myszka (1999)
10.1111/j.1742-4658.2009.07132.x / FEBS J. / NMR study of complexes between low molecular mass inhibitors and the West Nile virus NS2B–NS3 protease by Su (2009)
10.1002/1097-0134(20010201)42:2<256::AID-PROT130>3.0.CO;2-4 / Proteins / Efficient electrostatic solvation model for protein–fragment docking by Majeux (2001)
10.1002/(SICI)1097-0134(19991001)37:1<88::AID-PROT9>3.0.CO;2-O / Proteins / Exhaustive docking of molecular fragments with electrostatic solvation by Majeux (1999)
10.1002/jcc.10384 / J. Comput. Chem. / Automated docking of highly flexible ligands by genetic algorithms: a critical assessment by Cecchini (2004)
10.1515/BC.2001.168 / Biol. Chem. / Fragment-based flexible ligand docking by evolutionary optimization by Budin (2001)
10.1038/nsmb1073 / Nat. Struct. Mol. Biol. / Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus by Erbel (2006)
10.1007/s00705-005-0626-6 / Arch. Virol. / A multigene analysis of the phylogenetic relationships among the flaviviruses (family: Flaviviridae) and the evolution of vector transmission by Cook (2006)
10.1110/ps.072753207 / Protein Sci. / Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold by Aleshin (2007)
{'key': '10.1016/j.ab.2009.08.013_bib34', 'series-title': 'Resonance Energy Transfer: Theory and Data', 'author': 'Van Der Meer', 'year': '1991'} / Resonance Energy Transfer: Theory and Data by Van Der Meer (1991)
10.1016/0003-2697(83)90020-9 / Anal. Biochem. / Correction for light absorption in fluorescence studies of protein–ligand interactions by Birdsall (1983)
{'key': '10.1016/j.ab.2009.08.013_bib36', 'series-title': 'Enzyme Inhibitors in Drug Discovery: A Guide for Medicinal Chemists and Pharmacologists', 'author': 'Copeland', 'year': '2005'} / Enzyme Inhibitors in Drug Discovery: A Guide for Medicinal Chemists and Pharmacologists by Copeland (2005)
10.1021/jm061103g / J. Med. Chem. / Interpreting steep dose–response curves in early inhibitor discovery by Shoichet (2006)
10.1016/S0169-409X(00)00129-0 / Adv. Drug Deliv. Rev. / Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings by Lipinski (2001)
10.1002/jcc.21287 / J. Comput. Chem. / CHARMM: the biomolecular simulation program by Brooks (2009)
W.L. Delano, The PyMOL Molecular Graphics System, DeLano Scientific, San Carlos, CA, BI050307G, 2004. Available from: <http://www.pymol.org>.

Dates

Type	When
Created	16 years ago (Aug. 14, 2009, 4:48 a.m.)
Deposited	5 years, 3 months ago (May 21, 2020, 8:03 a.m.)
Indexed	3 days, 12 hours ago (Aug. 30, 2025, 1:09 p.m.)
Issued	15 years, 9 months ago (Dec. 1, 2009)
Published	15 years, 9 months ago (Dec. 1, 2009)
Published Print	15 years, 9 months ago (Dec. 1, 2009)

Funders 0

None

BibTeX

@article{Bodenreider_2009, title={A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease}, volume={395}, ISSN={0003-2697}, url={http://dx.doi.org/10.1016/j.ab.2009.08.013}, DOI={10.1016/j.ab.2009.08.013}, number={2}, journal={Analytical Biochemistry}, publisher={Elsevier BV}, author={Bodenreider, Christophe and Beer, David and Keller, Thomas H. and Sonntag, Sebastian and Wen, Daying and Yap, LiJian and Yau, Yin Hoe and Shochat, Susana Geifman and Huang, Danzhi and Zhou, Ting and Caflisch, Amedeo and Su, Xun-Cheng and Ozawa, Kiyoshi and Otting, Gottfried and Vasudevan, Subhash G. and Lescar, Julien and Lim, Siew Pheng}, year={2009}, month=dec, pages={195–204} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        8,
        30
      ]
    ],
    "date-time": "2025-08-30T17:09:33Z",
    "timestamp": 1756573773746
  },
  "reference-count": 40,
  "publisher": "Elsevier BV",
  "issue": "2",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2009,
            12,
            1
          ]
        ],
        "date-time": "2009-12-01T00:00:00Z",
        "timestamp": 1259625600000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2009,
        12
      ]
    ]
  },
  "DOI": "10.1016/j.ab.2009.08.013",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2009,
        8,
        14
      ]
    ],
    "date-time": "2009-08-14T08:48:30Z",
    "timestamp": 1250239710000
  },
  "page": "195-204",
  "source": "Crossref",
  "is-referenced-by-count": 93,
  "title": "A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease",
  "prefix": "10.1016",
  "volume": "395",
  "author": [
    {
      "given": "Christophe",
      "family": "Bodenreider",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "David",
      "family": "Beer",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Thomas H.",
      "family": "Keller",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Sebastian",
      "family": "Sonntag",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Daying",
      "family": "Wen",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "LiJian",
      "family": "Yap",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Yin Hoe",
      "family": "Yau",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Susana Geifman",
      "family": "Shochat",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Danzhi",
      "family": "Huang",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Ting",
      "family": "Zhou",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Amedeo",
      "family": "Caflisch",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Xun-Cheng",
      "family": "Su",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Kiyoshi",
      "family": "Ozawa",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Gottfried",
      "family": "Otting",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Subhash G.",
      "family": "Vasudevan",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Julien",
      "family": "Lescar",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Siew Pheng",
      "family": "Lim",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.ab.2009.08.013_bib1",
      "doi-asserted-by": "crossref",
      "first-page": "384",
      "DOI": "10.1016/S1367-5931(97)80078-6",
      "article-title": "High-throughput screening: advances in assay technologies",
      "volume": "1",
      "author": "Sittampalam",
      "year": "1997",
      "journal-title": "Curr. Opin. Chem. Biol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib2",
      "doi-asserted-by": "crossref",
      "first-page": "47",
      "DOI": "10.1016/S0958-1669(99)00051-8",
      "article-title": "High-throughput and ultra-high-throughput screening: Solution- and cell-based approaches",
      "volume": "11",
      "author": "Sundberg",
      "year": "2000",
      "journal-title": "Curr. Opin. Biotechnol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib3",
      "doi-asserted-by": "crossref",
      "first-page": "607",
      "DOI": "10.1016/j.drudis.2006.05.014",
      "article-title": "Screening in a spirit haunted world",
      "volume": "11",
      "author": "Shoichet",
      "year": "2006",
      "journal-title": "Drug Discov. Today"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib4",
      "doi-asserted-by": "crossref",
      "first-page": "1712",
      "DOI": "10.1021/jm010533y",
      "article-title": "A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening",
      "volume": "45",
      "author": "Mcgovern",
      "year": "2002",
      "journal-title": "J. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib5",
      "doi-asserted-by": "crossref",
      "first-page": "550",
      "DOI": "10.1038/nprot.2006.77",
      "article-title": "A detergent-based assay for the detection of promiscuous inhibitors",
      "volume": "1",
      "author": "Feng",
      "year": "2006",
      "journal-title": "Nat. Protoc."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib6",
      "doi-asserted-by": "crossref",
      "first-page": "3448",
      "DOI": "10.1021/jm0340896",
      "article-title": "Effect of detergent on \u201cpromiscuous\u201d inhibitors",
      "volume": "46",
      "author": "Ryan",
      "year": "2003",
      "journal-title": "J. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib7",
      "first-page": "58",
      "article-title": "Inhibition of the NS2B\u2013NS3 protease: towards a causative therapy for dengue virus diseases",
      "volume": "28",
      "author": "Katzenmeier",
      "year": "2004",
      "journal-title": "Dengue Bull."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib8",
      "first-page": "1567",
      "article-title": "Strategies for the identification of inhibitors of West Nile virus and other flaviviruses",
      "volume": "3",
      "author": "Shi",
      "year": "2002",
      "journal-title": "Curr. Opin. Invest. Drugs"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib9",
      "doi-asserted-by": "crossref",
      "first-page": "649",
      "DOI": "10.1146/annurev.mi.44.100190.003245",
      "article-title": "Flavivirus genome organization, expression, and replication",
      "volume": "44",
      "author": "Chambers",
      "year": "1990",
      "journal-title": "Annu. Rev. Microbiol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib10",
      "doi-asserted-by": "crossref",
      "first-page": "2034",
      "DOI": "10.1128/JVI.67.4.2034-2042.1993",
      "article-title": "Deletion analysis of dengue virus type 4 nonstructural protein NS2B: Identification of a domain required for NS2B\u2013NS3 protease activity",
      "volume": "67",
      "author": "Falgout",
      "year": "1993",
      "journal-title": "J. Virol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib11",
      "doi-asserted-by": "crossref",
      "first-page": "4364",
      "DOI": "10.1128/JVI.64.9.4364-4374.1990",
      "article-title": "In vitro processing of dengue virus type 2 nonstructural proteins NS2A, NS2B, and NS3",
      "volume": "64",
      "author": "Preugschat",
      "year": "1990",
      "journal-title": "J. Virol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "1237",
      "DOI": "10.1016/j.bbrc.2005.03.107",
      "article-title": "Competitive inhibition of the dengue virus NS3 serine protease by synthetic peptides representing polyprotein cleavage sites",
      "volume": "330",
      "author": "Chanprapaph",
      "year": "2005",
      "journal-title": "Biochem. Biophys. Res. Commun."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib13",
      "doi-asserted-by": "crossref",
      "first-page": "6585",
      "DOI": "10.1021/jm0607606",
      "article-title": "Peptide inhibitors of West Nile NS3 protease: SAR study of tetrapeptide aldehyde inhibitors",
      "volume": "49",
      "author": "Knox",
      "year": "2006",
      "journal-title": "J. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib14",
      "doi-asserted-by": "crossref",
      "first-page": "2223",
      "DOI": "10.1099/vir.0.82735-0",
      "article-title": "Yellow fever virus NS3 protease: peptide-inhibition studies",
      "volume": "88",
      "author": "Lohr",
      "year": "2007",
      "journal-title": "J. Gen. Virol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib15",
      "doi-asserted-by": "crossref",
      "first-page": "40",
      "DOI": "10.1016/j.bmcl.2005.09.049",
      "article-title": "Peptide inhibitors of dengue virus NS3 protease: II. SAR study of tetrapeptide aldehyde inhibitors",
      "volume": "16",
      "author": "Yin",
      "year": "2006",
      "journal-title": "Bioorg. Med. Chem. Lett."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib16",
      "doi-asserted-by": "crossref",
      "first-page": "36",
      "DOI": "10.1016/j.bmcl.2005.09.062",
      "article-title": "Peptide inhibitors of dengue virus NS3 protease: I. Warhead",
      "volume": "16",
      "author": "Yin",
      "year": "2006",
      "journal-title": "Bioorg. Med. Chem. Lett."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib17",
      "doi-asserted-by": "crossref",
      "first-page": "503",
      "DOI": "10.1042/BJ20051374",
      "article-title": "Cleavage targets and the d-arginine-based inhibitors of the West Nile virus NS3 processing proteinase",
      "volume": "393",
      "author": "Shiryaev",
      "year": "2006",
      "journal-title": "Biochem. J."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib18",
      "doi-asserted-by": "crossref",
      "first-page": "257",
      "DOI": "10.1016/j.bmc.2004.09.036",
      "article-title": "Identification and characterization of nonsubstrate based inhibitors of the essential dengue and West Nile virus proteases",
      "volume": "13",
      "author": "Ganesh",
      "year": "2005",
      "journal-title": "Bioorg. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "737",
      "DOI": "10.1089/adt.2007.101",
      "article-title": "HTS identifies novel and specific uncompetitive inhibitors of the two-component NS2B\u2013NS3 proteinase of West Nile virus",
      "volume": "5",
      "author": "Johnston",
      "year": "2007",
      "journal-title": "Assay Drug Dev. Technol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib20",
      "doi-asserted-by": "crossref",
      "first-page": "3385",
      "DOI": "10.1128/AAC.01508-07",
      "article-title": "Identification and biochemical characterization of small molecule inhibitors of West Nile virus serine protease by a high throughput screen",
      "volume": "52",
      "author": "Mueller",
      "year": "2008",
      "journal-title": "Antimicrob. Agents Chemother."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib21",
      "doi-asserted-by": "crossref",
      "first-page": "e356",
      "DOI": "10.1371/journal.pntd.0000356",
      "article-title": "Discovery of a non-peptidic inhibitor of West Nile virus NS3 protease by high-throughput docking",
      "volume": "3",
      "author": "Ekonomiuk",
      "year": "2009",
      "journal-title": "PLoS Negl. Trop. Dis."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib22",
      "doi-asserted-by": "crossref",
      "first-page": "28766",
      "DOI": "10.1074/jbc.M500588200",
      "article-title": "Functional profiling of recombinant NS3 proteases from all four serotypes of dengue virus using tetrapeptide and octapeptide substrate libraries",
      "volume": "280",
      "author": "Li",
      "year": "2005",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib23",
      "doi-asserted-by": "crossref",
      "first-page": "139",
      "DOI": "10.1006/abio.1998.2738",
      "article-title": "Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: a thermodynamic study of ligand binding to protein tyrosine phosphatase 1B",
      "volume": "261",
      "author": "Zhang",
      "year": "1998",
      "journal-title": "Anal. Biochem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "1986",
      "DOI": "10.1021/jm991174y",
      "article-title": "Biosensor analysis of the interaction between immobilized human serum albumin and drug compounds for prediction of human serum albumin binding levels",
      "volume": "43",
      "author": "Frostell-Karlsson",
      "year": "2000",
      "journal-title": "J. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib25",
      "doi-asserted-by": "crossref",
      "first-page": "279",
      "DOI": "10.1002/(SICI)1099-1352(199909/10)12:5<279::AID-JMR473>3.0.CO;2-3",
      "article-title": "Improving biosensor analysis",
      "volume": "12",
      "author": "Myszka",
      "year": "1999",
      "journal-title": "J. Mol. Recognit."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib26",
      "doi-asserted-by": "crossref",
      "first-page": "4244",
      "DOI": "10.1111/j.1742-4658.2009.07132.x",
      "article-title": "NMR study of complexes between low molecular mass inhibitors and the West Nile virus NS2B\u2013NS3 protease",
      "volume": "276",
      "author": "Su",
      "year": "2009",
      "journal-title": "FEBS J."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib27",
      "doi-asserted-by": "crossref",
      "first-page": "256",
      "DOI": "10.1002/1097-0134(20010201)42:2<256::AID-PROT130>3.0.CO;2-4",
      "article-title": "Efficient electrostatic solvation model for protein\u2013fragment docking",
      "volume": "42",
      "author": "Majeux",
      "year": "2001",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib28",
      "doi-asserted-by": "crossref",
      "first-page": "88",
      "DOI": "10.1002/(SICI)1097-0134(19991001)37:1<88::AID-PROT9>3.0.CO;2-O",
      "article-title": "Exhaustive docking of molecular fragments with electrostatic solvation",
      "volume": "37",
      "author": "Majeux",
      "year": "1999",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib29",
      "doi-asserted-by": "crossref",
      "first-page": "412",
      "DOI": "10.1002/jcc.10384",
      "article-title": "Automated docking of highly flexible ligands by genetic algorithms: a critical assessment",
      "volume": "25",
      "author": "Cecchini",
      "year": "2004",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib30",
      "doi-asserted-by": "crossref",
      "first-page": "1365",
      "DOI": "10.1515/BC.2001.168",
      "article-title": "Fragment-based flexible ligand docking by evolutionary optimization",
      "volume": "382",
      "author": "Budin",
      "year": "2001",
      "journal-title": "Biol. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib31",
      "doi-asserted-by": "crossref",
      "first-page": "372",
      "DOI": "10.1038/nsmb1073",
      "article-title": "Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus",
      "volume": "13",
      "author": "Erbel",
      "year": "2006",
      "journal-title": "Nat. Struct. Mol. Biol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib32",
      "doi-asserted-by": "crossref",
      "first-page": "309",
      "DOI": "10.1007/s00705-005-0626-6",
      "article-title": "A multigene analysis of the phylogenetic relationships among the flaviviruses (family: Flaviviridae) and the evolution of vector transmission",
      "volume": "151",
      "author": "Cook",
      "year": "2006",
      "journal-title": "Arch. Virol."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib33",
      "doi-asserted-by": "crossref",
      "first-page": "795",
      "DOI": "10.1110/ps.072753207",
      "article-title": "Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold",
      "volume": "16",
      "author": "Aleshin",
      "year": "2007",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib34",
      "series-title": "Resonance Energy Transfer: Theory and Data",
      "author": "Van Der Meer",
      "year": "1991"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib35",
      "doi-asserted-by": "crossref",
      "first-page": "353",
      "DOI": "10.1016/0003-2697(83)90020-9",
      "article-title": "Correction for light absorption in fluorescence studies of protein\u2013ligand interactions",
      "volume": "132",
      "author": "Birdsall",
      "year": "1983",
      "journal-title": "Anal. Biochem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib36",
      "series-title": "Enzyme Inhibitors in Drug Discovery: A Guide for Medicinal Chemists and Pharmacologists",
      "author": "Copeland",
      "year": "2005"
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib37",
      "doi-asserted-by": "crossref",
      "first-page": "7274",
      "DOI": "10.1021/jm061103g",
      "article-title": "Interpreting steep dose\u2013response curves in early inhibitor discovery",
      "volume": "49",
      "author": "Shoichet",
      "year": "2006",
      "journal-title": "J. Med. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib38",
      "doi-asserted-by": "crossref",
      "first-page": "3",
      "DOI": "10.1016/S0169-409X(00)00129-0",
      "article-title": "Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings",
      "volume": "46",
      "author": "Lipinski",
      "year": "2001",
      "journal-title": "Adv. Drug Deliv. Rev."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib39",
      "doi-asserted-by": "crossref",
      "first-page": "1545",
      "DOI": "10.1002/jcc.21287",
      "article-title": "CHARMM: the biomolecular simulation program",
      "volume": "30",
      "author": "Brooks",
      "year": "2009",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "10.1016/j.ab.2009.08.013_bib40",
      "unstructured": "W.L. Delano, The PyMOL Molecular Graphics System, DeLano Scientific, San Carlos, CA, BI050307G, 2004. Available from: <http://www.pymol.org>."
    }
  ],
  "container-title": "Analytical Biochemistry",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0003269709005612?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0003269709005612?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2020,
        5,
        21
      ]
    ],
    "date-time": "2020-05-21T12:03:14Z",
    "timestamp": 1590062594000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S0003269709005612"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2009,
        12
      ]
    ]
  },
  "references-count": 40,
  "journal-issue": {
    "issue": "2",
    "published-print": {
      "date-parts": [
        [
          2009,
          12
        ]
      ]
    }
  },
  "alternative-id": [
    "S0003269709005612"
  ],
  "URL": "http://dx.doi.org/10.1016/j.ab.2009.08.013",
  "relation": {},
  "ISSN": [
    "0003-2697"
  ],
  "subject": [],
  "container-title-short": "Analytical Biochemistry",
  "published": {
    "date-parts": [
      [
        2009,
        12
      ]
    ]
  }
}