DOI: 10.1016/s1359-0278(98)00019-4. What is the probability of a chance prediction of a protein structure with an rmsd of 6 å?

What is the probability of a chance prediction of a protein structure with an rmsd of 6 å?

10.1016/s1359-0278(98)00019-4

Crossref journal-article

Elsevier BV

Folding and Design (78)

Bibliography

Reva, B. A., Finkelstein, A. V., & Skolnick, J. (1998). What is the probability of a chance prediction of a protein structure with an rmsd of 6 Ã¥? Folding and Design, 3(2), 141â147.

Authors 3

Boris A Reva (first)
Alexei V Finkelstein (additional)
Jeffrey Skolnick (additional)

References 19 Referenced 221

10.1016/S1359-0278(97)00011-4 / Fold. Des / Meeting review: the second meeting on the critical assessment of techniques for protein structure prediction (CASP2) by Dunbrack (1997)
10.1107/S0567739478001680 / Acta Crystallogr. A / A discussion of the solution for the best rotation to relate two sets of vectors by Kabsch (1978)
10.1107/S0108767386099786 / Acta Crystallogr. A / A toolkit for computational molecular biology. II. On the optimal superposition of two sets of coordinates by Lesk (1986)
10.1002/j.1460-2075.1986.tb04288.x / EMBO J / The relation between the divergence of sequence and structure in proteins by Chothia (1986)
10.1006/jmbi.1994.1193 / J. Mol. Biol / Folding the mainchain of small proteins with the genetic algorithm by Dandekar (1994)
10.1006/jmbi.1996.0115 / J. Mol. Biol / Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions by Dandekar (1996)
10.1006/jmbi.1996.0720 / J. Mol. Biol / MONSSTER: a method for folding globular proteins with a small number of distance restraints by Skolnick (1997)
10.1016/0022-2836(80)90289-2 / J. Mol. Biol / On the prediction of protein structure: the significance of the root-mean-square deviation by Cohen (1980)
10.1006/jmbi.1994.1017 / J. Mol. Biol / Significance of root-mean-square deviation in comparing three-dimensional structures of globular proteins by Maiorov (1994)
10.1016/S0022-2836(05)80068-3 / J. Mol. Biol / Identification of native protein folds amongst a large number of incorrect models by Hendlich (1990)
10.1002/prot.340220308 / Proteins / Size-independent comparison of protein three-dimensional structures by Maiorov (1995)
10.1002/pro.5560010313 / Protein Sci / Selection of a representative set of structures from the Brookhaven Protein Data Bank by Hobohm (1992)
10.1016/0022-2836(81)90087-5 / J. Mol. Biol / Identification of common molecular subsequences by Smith (1981)
10.1016/S0022-2836(05)80134-2 / J. Mol. Biol / SCOP: a structural classification of proteins database for the investigation of sequences and structures by Murzin (1995)
{'key': '10.1016/S1359-0278(98)00019-4_bib15', 'series-title': 'Program FITT for rmsd calculation', 'author': 'Finkelstein', 'year': '1987'} / Program FITT for rmsd calculation by Finkelstein (1987)
{'key': '10.1016/S1359-0278(98)00019-4_bib16', 'series-title': 'Mathematical Methods of Physics', 'author': 'Mathews', 'year': '1964'} / Mathematical Methods of Physics by Mathews (1964)
{'key': '10.1016/S1359-0278(98)00019-4_bib17', 'series-title': 'Numeric Recipes in FORTRAN', 'author': 'Press', 'year': '1994'} / Numeric Recipes in FORTRAN by Press (1994)
10.1016/0301-4622(89)80058-4 / Biophys. Chem / Formation of unique structure in polypeptide chains: theoretical investigation with the aid of a replica approach by Shakhnovich (1989)
10.1073/pnas.75.5.2069 / Proc. Natl Acad. Sci. USA / Statistics of self-avoiding walks confined to strips and capillaries by Wall (1978)

Dates

Type	When
Created	20 years, 2 months ago (July 7, 2005, 7:24 a.m.)
Deposited	6 years, 6 months ago (March 5, 2019, 7:51 a.m.)
Indexed	15 hours, 58 minutes ago (Sept. 6, 2025, 4:25 p.m.)
Issued	27 years, 5 months ago (April 1, 1998)
Published	27 years, 5 months ago (April 1, 1998)
Published Print	27 years, 5 months ago (April 1, 1998)

Funders 0

None

BibTeX

@article{Reva_1998, title={What is the probability of a chance prediction of a protein structure with an rmsd of 6 å?}, volume={3}, ISSN={1359-0278}, url={http://dx.doi.org/10.1016/s1359-0278(98)00019-4}, DOI={10.1016/s1359-0278(98)00019-4}, number={2}, journal={Folding and Design}, publisher={Elsevier BV}, author={Reva, Boris A and Finkelstein, Alexei V and Skolnick, Jeffrey}, year={1998}, month=apr, pages={141–147} }

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