DOI: 10.1016/s1359-0278(96)00051-x. Coordination geometry of nonbonded residues in globular proteins

Coordination geometry of nonbonded residues in globular proteins

10.1016/s1359-0278(96)00051-x

Crossref journal-article

Elsevier BV

Folding and Design (78)

Bibliography

Bahar, I., & Jernigan, R. L. (1996). Coordination geometry of nonbonded residues in globular proteins. Folding and Design, 1(5), 357â370.

Authors 2

Ivet Bahar (first)
Robert L. Jernigan (additional)

References 28 Referenced 65

10.1002/pro.5560030702 / Protein Sci / Side-chain entropy and packing in proteins by Bromberg (1994)
10.1073/pnas.88.10.4195 / Proc. Natl. Acad. Sci. USA / The protein-folding problem: the native fold determines packing, but does packing determine the native fold? by Behe (1991)
10.1017/S0033583500002845 / Quart. Rev. Biophys / An analysis of packing in the protein folding problem by Richards (1994)
10.1016/S0969-2126(00)00065-4 / Structure / Volume changes on protein folding by Harpaz (1994)
10.1021/bi00132a025 / Biochemistry / Structural and energetic consequences of disruptive mutations in a protein core by Lim (1992)
10.1126/science.8248779 / Science / A switch between two-, three- and four-stranded coiled coils in GCN4 leucine zipper mutants by Harbury (1993)
10.1126/science.8346440 / Science / Metal ion-dependent modulation of the dynamics of a designed protein by Handel (1993)
10.1021/bi00396a001 / Biochemistry / Genetic and structural analysis of protein stability problem by Matthews (1987)
10.1038/340122a0 / Nature / Mapping the transition state and pathway of protein folding by protein engineering by Matouschek (1989)
10.1146/annurev.bi.62.070193.001035 / Annu. Rev. Biochem / Structural and genetic analysis of protein stability by Matthews (1993)
10.1016/S0065-3233(08)60337-X / Adv. Protein Chem / Studies on protein stability with T4 lysozyme by Matthews (1995)
10.1016/0022-2836(87)90521-3 / J. Mol. Biol / Determinants of a protein fold. Unique features of the globin amino acid sequences by Bashford (1987)
10.1006/jmbi.1994.1733 / J. Mol. Biol / Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts, secondary structure and accessibility by Russell (1994)
10.1146/annurev.bb.06.060177.001055 / Annu. Rev. Biophys. Bioeng / Areas, volume, packing and protein structure by Richards (1977)
10.1021/bi00027a013 / Biochemistry / A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil by Lumb (1995)
10.1021/ma00145a039 / Macromolecules / Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation by Miyazawa (1985)
10.1006/jmbi.1996.0114 / J. Mol. Biol / Residue–residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading by Miyazawa (1996)
10.1016/0022-2836(91)90570-V / J. Mol. Biol / The role of internal packing interactions in determining the structure and stability of a protein by Lim (1991)
10.1038/nsb0296-178 / Nat. Struct. Biol / The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation by Ogata (1996)
10.1038/nsb0495-269 / Nat. Struct. Biol / Mutation of a buried residue causes loss of activity but no conformational change in the heat-labile enterotoxin of Escherichia coli by Merritt (1995)
10.1002/pro.5560040207 / Protein Sci / Replacements in a conserved leucine cluster in the hydrophobic heme pocket of cytochrome c by Lo (1995)
10.1016/S0959-440X(96)80075-3 / Curr. Opin. Struct. Biol / Structure-derived potentials and protein simulations by Jernigan (1996)
10.1016/0022-2836(90)90268-Q / J. Mol. Biol / SIRIUS. An automated method of analysis of preferred packing arrangements between protein groups by Singh (1990)
{'key': '10.1016/S1359-0278(96)00051-X_bib24', 'series-title': 'Atlas of Protein Sidechain Interactions', 'author': 'Singh', 'year': '1992'} / Atlas of Protein Sidechain Interactions by Singh (1992)
10.1107/S0021889892008240 / J. Appl. Crystallogr / Quality control of protein folding models: directional atomic contact analysis by Vriend (1993)
10.1016/0022-2836(87)90358-5 / J. Mol. Biol / Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes by Ponder (1987)
{'key': '10.1016/S1359-0278(96)00051-X_bib27', 'series-title': 'Crystallographic Databases —\xa0 Information Content Software Systems, Scientific Applications', 'first-page': '107', 'author': 'Abola', 'year': '1987'} / Crystallographic Databases — Information Content Software Systems, Scientific Applications by Abola (1987)
10.1016/S0022-2836(77)80200-3 / J. Mol. Biol / The protein databank: a computer-based archival file for macromolecular structures by Bernstein (1977)

Dates

Type	When
Created	20 years, 1 month ago (July 12, 2005, 5:55 p.m.)
Deposited	6 years, 7 months ago (Jan. 24, 2019, 10:52 a.m.)
Indexed	11 months, 3 weeks ago (Sept. 12, 2024, 9:33 p.m.)
Issued	28 years, 11 months ago (Oct. 1, 1996)
Published	28 years, 11 months ago (Oct. 1, 1996)
Published Print	28 years, 11 months ago (Oct. 1, 1996)

Funders 0

None

BibTeX

@article{Bahar_1996, title={Coordination geometry of nonbonded residues in globular proteins}, volume={1}, ISSN={1359-0278}, url={http://dx.doi.org/10.1016/s1359-0278(96)00051-x}, DOI={10.1016/s1359-0278(96)00051-x}, number={5}, journal={Folding and Design}, publisher={Elsevier BV}, author={Bahar, Ivet and Jernigan, Robert L.}, year={1996}, month=oct, pages={357–370} }

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