Multiple biological roles associated with the repeat (R) Region of the HIV-I RNA genome
10.1016/s1054-3589(00)48003-8
Crossref book-chapter
Elsevier
Advances in Pharmacology (78)
Bibliography

Berkhout, B. (2000). Multiple biological roles associated with the repeat (R) Region of the HIV-I RNA genome. HIV-1: Molecular Biology and Pathogenesis Viral Mechanisms, 29–73.

Authors 1
  1. Ben Berkhout (first)
References 201 Referenced 40
  1. 10.1016/S0021-9258(18)82204-9 / J. Biol. Chem. / Mechanism of HIV-1 reverse transcriptase: Termination of processive synthesis on a natural DNA template is influenced by the sequence of the template-primer stem by Abbotts (1993)
  2. 10.1016/0092-8674(91)90502-P / Cell / The HTLV-I Rex response element mediates a novel form of mRNA polyadenylation by Ahmed (1991)
  3. 10.1128/JVI.64.5.1920-1926.1990 / J. Virol. / Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging results in production of noninfectious virus by Aldovini (1990)
  4. 10.1002/j.1460-2075.1994.tb06342.x / EMBO J. / Trans-activation of the minus-strand DNA transfer by nucleocapsid protein during reverse transcription of the retroviral genome by Allain (1994)
  5. {'key': '10.1016/S1054-3589(00)48003-8_BIB5', 'first-page': '225', 'article-title': 'cis Elements and trans-acting factors required for minus-strand DNA transfer during reverse transcription of the genomic RNA of murine leukemia virus', 'volume': '72', 'author': 'Allain', 'year': '1998', 'journal-title': 'J. Virol.'} / J. Virol. / cis Elements and trans-acting factors required for minus-strand DNA transfer during reverse transcription of the genomic RNA of murine leukemia virus by Allain (1998)
  6. 10.1016/S0021-9258(17)36678-4 / J. Biol. Chem. / Comparison of deoxyoligonucleotide and tRNALys3 as primers in an endogenous human immunodeficiency virus-1 in vitro reverse transcription/template-switching reaction by Arts (1994)
  7. 10.1101/gad.9.23.3008 / Genes Dev. / Poly (A) site selection in the HIV-1 provirus: Inhibition of promoter-proximal polyadenylation by the downstream major splice donor site by Ashe (1995)
  8. 10.1093/emboj/16.18.5752 / EMBO J. / The HIV-1 5′ LTR poly (A) site is inactivated by U1 snRNP interaction with the downstream major splice donor site by Ashe (1997)
  9. 10.1128/JVI.72.7.6190-6194.1998 / J. Virol. / A minimal avian retroviral packaging sequence has a complex structure by Banks (1998)
  10. 10.1128/JVI.65.10.5165-5173.1991 / J. Virol. / An RNA secondary structure juxtaposes two remote genetic signals for human T-cell leukemia virus type 1 RNA 3′-end processing by Bar-Shira (1991)
  11. 10.1038/nsb0598-337 / Nat. Struct. Biol. / The parallel universe of RNA folding by Batey (1998)
  12. 10.1006/jmbi.1995.0189 / J. Mol. Biol. / Secondary structure model for the last two domains of single-stranded RNA phage Qβ by Beekwilder (1995)
  13. 10.1016/0092-8674(95)90326-7 / Cell / Degradation of mRNA in eukaryotes by Beelman (1995)
  14. 10.1093/emboj/16.3.611 / EMBO J. / Oncogenic potential of TAR RNA binding protein TRBP and its regulatory interaction with RNA-dependent protein kinase PKR by Benkirane (1997)
  15. 10.1074/jbc.273.38.24898 / J. Biol. Chem. / Activation of integrated provirus requires histone acetyltransferase. p300 and P/CAF are coactivators for HIV-1 Tat by Benkirane (1998)
  16. 10.1093/nar/20.1.27 / Nucleic Acids Res. / Structural features in TAR RNA of human and simian immunodeficiency viruses: A phylogenetic analysis by Berkhout (1992)
  17. 10.1016/S0079-6603(08)60359-1 / Progr. Nucl. Acid. Res. Mol. Biol. / Structure and function of the Human Immunodeficiency Virus leader RNA by Berkhout (1996)
  18. 10.1128/JVI.63.12.5501-5504.1989 / J. Virol. / Trans activation of human immunodeficiency virus type 1 is sequence specific for both the single-stranded bulge and loop of the trans-acting-responsive hairpin: a quantitative analysis by Berkhout (1989)
  19. 10.1016/0166-3542(94)00068-J / Antiviral Res. / Inhibition of human immunodeficiency virus expression by sense transcripts encoding the retroviral leader RNA by Berkhout (1995)
  20. 10.1128/JVI.70.10.6723-6732.1996 / J. Virol. / Role of the DIS hairpin in replication of human immunodeficiency virus type 1 by Berkhout (1996)
  21. 10.1006/viro.1998.9321 / Virology / The native structure of the HIV-1 RNA genome is required for the first strand-transfer of reverse transcription by Berkhout (1998)
  22. 10.1006/viro.1995.1077 / Virology / A conserved hairpin structure predicted for the poly (A) signal of human and simian immunodeficiency viruses by Berkhout (1995)
  23. 10.1006/jmbi.1994.0475 / J. Mol. Biol. / Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions by Berkhout (1995)
  24. 10.1093/nar/25.5.940 / Nucleic Acids Res. / Forced evolution of a regulatory RNA helix in the HIV-1 genome by Berkhout (1997)
  25. 10.1096/fasebj.7.1.8422965 / FASEB J. / In vitro dimerization of HIV-2 leader RNA in the absence of PuGGAPuA motifs by Berkhout (1993)
  26. 10.1016/0092-8674(89)90289-4 / Cell / Tat trans-activates the human immunodeficiency virus through a nascent RNA target by Berkhout (1989)
  27. 10.1006/viro.1994.1339 / Virology / Analysis of binding elements in the human immunodeficiency virus type 1 genomic RNA and nucleocapsid protein by Berkowitz (1994)
  28. 10.1007/978-3-642-80145-7_6 / Curr. Top. Microbiol. Immunol. / RNA packaging by Berkowitz (1996)
  29. 10.1128/JVI.69.10.6445-6456.1995 / J. Virol. / Retroviral nucleocapsid domains mediate the specific recognition of genomic viral RNAs by chimeric Gag polyproteins during RNA packaging in vivo by Berkowitz (1995)
  30. 10.1128/JVI.69.7.4440-4452.1995 / J. Virol. / Effects on DNA synthesis and translocation caused by mutations in the RNase H domain of Moloney murine leukemia virus reverse transcriptase by Blain (1996)
  31. 10.1128/JVI.63.1.421-424.1989 / J. Virol. / Identification of a U5-specific sequence required for efficient polyadenylation within the human immunodeficiency virus long terminal repeat by Bohnlein (1989)
  32. 10.1016/0092-8674(90)90389-V / Cell / A nuclear translational block imposed by the HIV-1 U3 region is relieved by the Tat-TAR interaction by Braddock (1990)
  33. 10.1096/fasebj.7.1.8422967 / FASEB J. / HIV-1 TAR RNA-binding proteins control TAT activation of translation in Xenopus oocytes by Braddock (1993)
  34. 10.1128/JVI.65.6.3340-3343.1991 / J. Virol. / Efficient polyadenylation within the human immunodeficiency virus type 1 long terminal repeat requires flanking U3-specific sequences by Brown (1991)
  35. {'key': '10.1016/S1054-3589(00)48003-8_BIB35', 'first-page': '6700', 'article-title': 'Mutations in HIV reverse transcriptase which alter RNaseH activity and decrease strand transfer efficiency are suppressed by HIV nucleocapsid protein', 'volume': '94', 'author': 'Cameron', 'year': '1997'} / Mutations in HIV reverse transcriptase which alter RNaseH activity and decrease strand transfer efficiency are suppressed by HIV nucleocapsid protein by Cameron (1997)
  36. {'key': '10.1016/S1054-3589(00)48003-8_BIB36', 'first-page': '11279', 'article-title': 'Binding of RNA template to a complex of HIV-1 reverse transcriptase/primer/template', 'volume': '94', 'author': 'Canard', 'year': '1997'} / Binding of RNA template to a complex of HIV-1 reverse transcriptase/primer/template by Canard (1997)
  37. {'key': '10.1016/S1054-3589(00)48003-8_BIB37', 'series-title': 'Reverse Transcriptase', 'first-page': '103', 'author': 'Champoux', 'year': '1993'} / Reverse Transcriptase by Champoux (1993)
  38. 10.1128/JVI.68.11.7008-7020.1994 / J. Virol. / Direct interactions between autoantigen La and human immunodeficiency virus leader RNA by Chang (1994)
  39. 10.1002/j.1460-2075.1992.tb05196.x / EMBO J. / Regulation of polyadenylation in human immunodeficiency virus (HIV): Contributions of promoter proximity and upstream sequences by Cherrington (1992)
  40. 10.1099/0022-1317-80-3-777 / J. Gen. Virol. / Translational effects of peptide antagonists of Tat protein of human immunodeficiency virus type 1 by Choudhury (1999)
  41. 10.1074/jbc.271.44.27888 / J. Biol. Chem. / Requirements for RNA polymerase II carboxy-terminal domain for activated transcription of human retroviruses human T-cell lymphotropic virus I and HIV-1 by Chun (1996)
  42. 10.1128/JVI.64.10.5230-5234.1990 / J. Virol. / A mutant of human immunodeficiency virus with reduced RNA packaging and abnormal particle morphology by Clavel (1990)
  43. 10.1128/JVI.71.5.3407-3414.1997 / J. Virol. / Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation by Clever (1997)
  44. 10.1128/JVI.73.1.101-109.1999 / J. Virol. / Genetic dissociation of the encapsidation and reverse transcription functions in the 5′R region of human immunodeficiency virus type 1 by Clever (1999)
  45. 10.1128/JVI.69.4.2101-2109.1995 / J. Virol. / RNA secondary structure and binding sites for gag gene products in the 5′ packaging signal of human immunodeficiency virus type 1 by Clever (1995)
  46. 10.1101/gad.11.21.2755 / Genes Dev. / Mechanism and regulation of mRNA polyadenylation by Colgan (1997)
  47. 10.1128/JVI.26.2.498-509.1978 / J. Virol. / Unwinding-like activity associated with avaian retrovirus RNA-directed DNA polymerase by Collett (1978)
  48. {'key': '10.1016/S1054-3589(00)48003-8_BIB48', 'first-page': '9445', 'article-title': 'Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo', 'volume': '92', 'author': 'Cosentino', 'year': '1995'} / Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo by Cosentino (1995)
  49. 10.1038/33198 / Nature / Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation by Craig (1998)
  50. 10.1016/0092-8674(86)90696-3 / Cell / Trans-activation of human immunodeficiency virus occurs via a bimodal mechanism by Cullen (1986)
  51. {'key': '10.1016/S1054-3589(00)48003-8_BIB51', 'first-page': 'S19', 'article-title': 'Regulation of HIV gene expression', 'volume': '9', 'author': 'Cullen', 'year': '1995', 'journal-title': 'AIDS'} / AIDS / Regulation of HIV gene expression by Cullen (1995)
  52. 10.1128/JVI.72.10.7807-7814.1998 / J. Virol. / The secondary structure of the R region of a murine leukemia virus is important for stimulation of long terminal repeat driven gene expression by Cupelli (1998)
  53. 10.1093/nar/26.16.3667 / Nucleic Acids Res. / Mapping the RNA binding sites for human immunodeficiency virus type-1 Gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions by Damgaard (1998)
  54. {'key': '10.1016/S1054-3589(00)48003-8_BIB54', 'first-page': '763', 'article-title': 'Transactivation of the 5′ to 3′ viral DNA strand transfer by nucleocapsid protein during reverse transcription of HIV-1 RNA', 'volume': '316', 'author': 'Darlix', 'year': '1993', 'journal-title': 'Genetics'} / Genetics / Transactivation of the 5′ to 3′ viral DNA strand transfer by nucleocapsid protein during reverse transcription of HIV-1 RNA by Darlix (1993)
  55. 10.1006/jmbi.1995.0635 / J. Mol. Biol. / First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses by Darlix (1995)
  56. 10.1128/JVI.71.3.2346-2356.1997 / J. Virol. / A conserved hairpin motif in the R-US region of the human immunodeficiency virus type 1 RNA genome is essential for replication by Das (1997)
  57. 10.1128/JVI.72.11.9217-9223.1998 / J. Virol. / The 5′ and 3′ TAR elements of the human immunodeficiency virus exert effects at several points in the virus life cycle by Das (1998)
  58. 10.1128/JVI.73.1.81-91.1999 / J. Virol. / A hairpin structure in the R region of the Human Immunodeficiency Virus type 1 RNA genome is instrumental in polyadenylation site selection by Das (1999)
  59. 10.1021/bi9814890 / Biochemistry / Actinomycin D inhibition of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase and nucleocapsid protein by Davis (1998)
  60. 10.1126/science.279.5349.384 / Science / Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element by De Guzman (1998)
  61. 10.1016/0022-2836(94)90030-2 / J. Mol. Biol. / Kinetic analysis of strand transfer from internal regions of heteropolymeric RNA templates by human immunodeficiency virus reverse transcriptase by DeStefano (1994)
  62. 10.1007/BF01384341 / Arch. Virol. / Human immunodeficiency virus nucleocapsid protein stimulates strand transfer from internal regions of heteropolymeric RNA templates by DeStefano (1995)
  63. 10.1016/S0021-9258(18)48619-X / J. Biol. Chem. / Interaction of Human Immunodeficiency Virus Nucleocapsid protein with a structure mimicking a replication intermediate by DeStefano (1996)
  64. 10.1016/S0021-9258(20)89464-2 / J. Biol. Chem. / Polymerization and RNase H activities of the reverse transcriptases of avian myeloblastosis, human immunodeficiency, and Moloney murine leukemia viruses are functionally uncoupled by DeStefano (1991)
  65. 10.1128/MCB.11.3.1624 / Mol. Cell Biol. / Involvement of long terminal repeat U3 sequences overlapping the transcription control region in human immunodeficiency virus type 1 mRNA 3′ end formation by DeZazzo (1991)
  66. {'key': '10.1016/S1054-3589(00)48003-8_BIB66', 'first-page': '6925', 'article-title': 'Human Immunodeficiency Virus 1 tat protein binds trans-activating-responsive region (TAR) RNA in vitro', 'volume': '86', 'author': 'Dingwall', 'year': '1989'} / Human Immunodeficiency Virus 1 tat protein binds trans-activating-responsive region (TAR) RNA in vitro by Dingwall (1989)
  67. 10.1089/aid.1997.13.533 / AIDS Res. Hum. Retroviruses / Wild-type and mutant HIV type 1 nucleocapsid proteins increase the proportion of long cDNA transcripts by viral reverse transcriptase by Drummond (1997)
  68. 10.1016/0092-8674(89)90904-5 / Cell / Activation of double-stranded RNA dependent kinase (dsl) by the TAR region of HIV-1 mRNA: A novel translational control mechanism by Edery (1989)
  69. 10.1093/nar/27.4.1070 / Nucleic Acids Res. / Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis by Farris (1999)
  70. 10.1128/JVI.66.7.4271-4278.1992 / J. Virol. / Wshen retroviral Reverse Transcriptase reach the end of their RNA templates by Fu (1992)
  71. 10.1128/JVI.68.8.5013-5018.1994 / J. Virol. / Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions by Fu (1994)
  72. 10.1038/17130 / Nature / Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes by Gao (1999)
  73. 10.1101/gad.12.22.3512 / Genes Dev. / The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein by Garber (1998)
  74. 10.1126/science.2011739 / Science / Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR by Gatignol (1991)
  75. 10.1016/0092-8674(87)90292-3 / Cell / Position-dependent sequence elements downstream of AAUAAA are required for efficient rabbit β-Globin mRNA 3′ end formation by Gil (1987)
  76. 10.1016/0092-8674(79)90357-X / Cell / A detailed model of reverse transcription and tests of crucial aspects by Gilboa (1979)
  77. 10.1128/MCB.11.5.2432 / Mol. Cell Biol. / Molecular analysis of two poly(A) site-processing factors that determine the recognition and efficiency of cleavage of the pre-mRNA by Gilmartin (1991)
  78. 10.1002/j.1460-2075.1992.tb05542.x / EMBO J. / Activation of HIV-1 pre-mRNA 3′ processing in vitro requires both an upstream element and TAR by Gilmartin (1992)
  79. 10.1101/gad.9.1.72 / Genes Dev. / CPSF recognition of an HIV-1 mRNA 3′-processing enhancer: multiple sequence contacts involved in poly(A) site definition by Gilmartin (1995)
  80. 10.1128/JVI.72.5.4448-4453.1998 / J. Virol. / PITALRE, the catalytic subunit of TAK, is required for human immunodeficiency virus Tat transactivation in vivo by Gold (1998)
  81. {'key': '10.1016/S1054-3589(00)48003-8_BIB81', 'first-page': '10763', 'article-title': 'Human immunodeficiency virus type 1 reverse transcriptase: Spatial and temporal relationship between the polymerase and RNase H activities', 'volume': '89', 'author': 'Gopalakrishnan', 'year': '1992'} / Human immunodeficiency virus type 1 reverse transcriptase: Spatial and temporal relationship between the polymerase and RNase H activities by Gopalakrishnan (1992)
  82. 10.1074/jbc.271.52.33654 / J. Biol. Chem. / Restoration of both structure and function to a defective poly(A) site by in vitro selection by Graveley (1996)
  83. 10.1128/MCB.16.9.4942 / Mol. Cell Biol. / RNA structure is a critical determinant of poly(A) site recognition by cleavage and polyadenylation specificity factor by Graveley (1996)
  84. 10.1099/0022-1317-79-12-2877 / J. Gen. Virol. / Retroviral RNA dimer linkage by Greatorex (1998)
  85. 10.1093/nar/26.5.1294 / Nucleic Acids Res. / Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter by Greger (1998)
  86. 10.1128/JVI.71.7.5178-5188.1997 / J. Virol. / Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA by Guo (1997)
  87. 10.1128/JVI.72.8.6716-6724.1998 / J. Virol. / Actinomycin D inhibits Human Immunodeficiency Virus type 1 minus-strand transfer in in vitro and endogenous reverse transcription assays by Guo (1998)
  88. 10.1128/JVI.69.8.4906-4913.1995 / J. Virol. / Human immunodeficiency virus type 1 TAR element revertant viruses define RNA structures required for efficient viral gene expression and replication by Harrich (1995)
  89. 10.1128/JVI.70.6.4017-4027.1996 / J. Virol. / A critical role for the TAR element in promoting efficient human immunodeficiency virus type 1 reverse transcription by Harrich (1996)
  90. 10.1093/emboj/16.6.1224 / EMBO J. / Tat is required for efficient HIV-1 reverse transcription by Harrich (1997)
  91. 10.1128/JVI.66.7.4144-4153.1992 / J. Virol. / The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure by Harrison (1992)
  92. 10.1093/nar/26.14.3433 / Nucleic Acids Res. / Pausing of reverse transcriptase on retroviral RNA templates is influenced by secondary structures both 5′ and 3′ of the catalytic site by Harrison (1998)
  93. 10.1128/MCB.5.11.2975 / Mol. Cell. Biol. / Definition of essential sequences and functional equivalence of elements downstream of the Adenovirus E2A and the early Simian Virus 40 polyadenylation sites by Hart (1985)
  94. 10.1016/0092-8674(85)90240-5 / Cell / Poly(A) site cleavage in a HeLa nuclear extract is dependent on downstream sequences by Hart (1985)
  95. 10.1016/S0076-6879(88)64058-4 / Methods Enzymol. / Extension inhibition analysis of translation initiation complexes by Hartz (1988)
  96. 10.1074/jbc.270.36.20871 / J. Biol. Chem. / RNA chaperones and the RNA folding problem by Herschlag (1995)
  97. 10.1006/viro.1997.8585 / Virology / Ultrastructure of HIV-1 genomic RNA by Hoglund (1997)
  98. 10.1128/JVI.72.10.8252-8256.1998 / J. Virol. / Interaction of the human immunodeficiency virus type 1 Tat with the transcriptional coactivators p300 and CREB binding protein by Hottiger (1998)
  99. 10.1002/j.1460-2075.1994.tb06583.x / EMBO J. / Human immunodeficiency viruses regulated by alternative trans-activators: Genetic evidence for a novel nontranscriptional function of Tat in virion infectivity by Huang (1994)
  100. 10.1126/science.1700865 / Science / Retroviral recombination and reverse transcription by Hu (1990)
  101. 10.1016/0092-8674(90)90235-7 / Cell / Do the poly(A) tail and 3′ untranslated region control mRNA translation? by Jackson (1990)
  102. 10.1007/BF02253352 / J. Biomed. Sci. / Tat, Tat-associated kinase, and transcription by Jeang (1998)
  103. 10.1016/S0021-9258(19)74555-4 / J. Biol. Chem. / Effects of integration and replication on transcription of the HIV-1 long terminal repeat by Jeang (1993)
  104. 10.1093/nar/26.23.5472 / Nucleic Acids Res. / The mechanism of Actinomycin D-mediated inhibition of HIV-1 reverse transcription by Jeeninga (1998)
  105. 10.1093/nar/22.1.47 / Nucleic Acids Res. / Mutagenicity and pausing of HIV reverse transcriptase during HIV plus-strand DNA synthesis by Ji (1994)
  106. 10.1021/bi951707e / Biochem. / Effect of human immunodeficiency virus type 1 (HIV-1) nucleocapsid protein on HIV-1 reverse transcriptase activity in vitro by Ji (1996)
  107. 10.1128/JVI.68.1.207-216.1994 / J. Virol. / One retroviral RNA is sufficient for synthesis of viral DNA by Jones (1994)
  108. 10.1038/330489a0 / Nature / Antitermination of transcription within the long terminal repeat of HIV-1 by tat gene product by Kao (1987)
  109. 10.1128/JVI.72.7.5877-5885.1998 / J. Virol. / Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: a possible role for the p2 domain of Gag in RNA encapsidation by Kaye (1998)
  110. 10.1002/j.1460-2075.1991.tb05002.x / EMBO J. / Cleavage and polyadenylation factor CPSF specifically interacts with the pre-mRNA 3′ processing signal AAUAAA by Keller (1991)
  111. 10.1016/0092-8674(95)90001-2 / Cell / No end yet to messenger RNA 3′ processing! by Keller (1995)
  112. 10.1093/nar/14.12.4939 / Nucleic Acids Res. / Requirement of AAUAAA and adjacent downstream sequences for SV40 early polyadenylation by Kessler (1986)
  113. 10.1074/jbc.272.27.16769 / J. Biol. Chem. / Evidence for a unique mechanism of strand transfer from the transactivation region of HIV-1 by Kim (1997)
  114. 10.1128/JVI.72.1.811-816.1998 / J. Virol. / Minimal requirements for a lentivirus vector based on human immunodeficiency virus type 1 by Kim (1998)
  115. 10.1016/S0021-9258(18)98417-6 / J. Biol. Chem. / Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro by Klarmann (1993)
  116. 10.1093/nar/26.8.1870 / Nucleic Acids Res. / Inhibition of polyadenylation by stable RNA secondary structure by Klasens (1998)
  117. 10.1016/S0167-4781(99)00011-1 / Biochim. Biophys. Acta / The effect of template RNA structure on elongation by HIV-1 reverse transcriptase by Klasens (1999)
  118. 10.1093/nar/27.2.446 / Nucleic Acids Res. / The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure by Klasens (1999)
  119. 10.1093/nar/22.2.137 / Nucleic Acids Res. / Premature strand transfer by the HIV-1 reverse transcriptase during strong-stop DNA synthesis by Klaver (1994)
  120. 10.1002/j.1460-2075.1994.tb06555.x / EMBO J. / Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus by Klaver (1994)
  121. 10.1128/JVI.68.6.3830-3840.1994 / J. Virol. / Comparison of 5′ and 3′ long terminal repeat promoter function in human immunodeficiency virus by Klaver (1994)
  122. {'key': '10.1016/S1054-3589(00)48003-8_BIB122', 'first-page': '14699', 'article-title': 'Functional topography of nascent RNA in elongation intermediates of RNA polymerase', 'volume': '95', 'author': 'Komissarova', 'year': '1998'} / Functional topography of nascent RNA in elongation intermediates of RNA polymerase by Komissarova (1998)
  123. 10.1093/emboj/16.4.856 / EMBO J. / Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors by Kulpa (1997)
  124. 10.1093/nar/23.13.2434 / Nucleic Acids Res. / Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1 by Lapadat-Tapolsky (1995)
  125. 10.1074/jbc.273.50.33781 / J. Biol. Chem. / Involvement of HIV-1 nucleocapsid protein in the recruitment of reverse transcriptase into nucleoprotein complexes formed in vitro by Lener (1998)
  126. {'key': '10.1016/S1054-3589(00)48003-8_BIB126', 'first-page': '1154', 'article-title': 'Synthesis of murine leukemia virus proteins associated with virions assembled in actinomycin-D-treated cells: Evidence for persistence of viral messenger RNA', 'volume': '73', 'author': 'Levin', 'year': '1976'} / Synthesis of murine leukemia virus proteins associated with virions assembled in actinomycin-D-treated cells: Evidence for persistence of viral messenger RNA by Levin (1976)
  127. 10.1128/JVI.64.9.4321-4328.1990 / J. Virol. / Template switching by reverse transcriptase during DNA synthesis by Luo (1990)
  128. 10.1128/MCB.14.10.6647 / Mol. Cell Biol. / The 64-kilodalton subunit of the CstF polyadenylation factor binds to premRNAs downstream of the cleavage site and influences cleavage site location by MacDonald (1994)
  129. 10.1006/viro.1994.1601 / Virology / HIV-1 TAR RNA has an intrinsic ability to activate interferon-inducible enzymes by Maitra (1994)
  130. 10.1101/gad.11.20.2633 / Genes Dev. / P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro by Mancebo (1997)
  131. 10.1016/0300-9084(96)88114-4 / Biochimie / tRNAs as primer of reverse transcriptases by Marquet (1995)
  132. {'key': '10.1016/S1054-3589(00)48003-8_BIB132', 'first-page': '13519', 'article-title': 'HIV-1 Tat transactivator recruits p300 and CREB-binding protein histone acetyltransferases to the viral promoter', 'volume': '95', 'author': 'Marzio', 'year': '1998'} / HIV-1 Tat transactivator recruits p300 and CREB-binding protein histone acetyltransferases to the viral promoter by Marzio (1998)
  133. 10.1006/viro.1993.1091 / Virology / Modulation of host cell nuclear proteins that bind to HIV-1 trans-activation-responsive element RNA by phorbol ester by Masuda (1993)
  134. 10.1128/JVI.70.5.2963-2973.1996 / J. Virol. / The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures by McBride (1996)
  135. 10.1128/JVI.71.3.2050-2058.1997 / J. Virol. / Position dependence of functional hairpins important for human immunodeficiency virus type 1 RNA encapsidation in vivo by McBride (1997)
  136. 10.1128/JVI.71.6.4544-4554.1997 / J. Virol. / Efficient encapsidation of human immunodeficiency virus type 1 vectors and further characterization of cis elements required for encapsidation by McBride (1997)
  137. 10.1016/S0042-6822(95)80067-0 / Virology / Mechanism of interferon action: RNA-binding of full-length and R-domain forms of the RNA-dependent protein kinase PKR-determination of Kd values for VAi and TAR RNAs by McCormack (1995)
  138. 10.1038/385357a0 / Nature / The C-terminal domain of RNA polymerase II couples mRNA processing to transcription by McCracken (1997)
  139. 10.1002/j.1460-2075.1986.tb04586.x / EMBO J. / Sequences capable of restoring poly(A) site function define two distinct downstream elements by McDevitt (1986)
  140. 10.1093/nar/13.4.1347 / Nucleic Acids Res. / The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3′ termini by McLauchlan (1985)
  141. {'key': '10.1016/S1054-3589(00)48003-8_BIB141', 'series-title': 'AnonymousTheoretical Biology and Biophysics Group', 'author': 'Myers', 'year': '1995'} / AnonymousTheoretical Biology and Biophysics Group by Myers (1995)
  142. 10.1006/jmbi.1998.2460 / J. Mol. Biol. / Recombination during reverse transcription: An evaluation of the role of the nucleocapsid protein by Negroni (1999)
  143. 10.1002/j.1460-2075.1988.tb03139.x / EMBO J. / Mutational analysis of the 5′ noncoding region of human immunodeficiency virus type 1: Effects of secondary structure by Parkin (1988)
  144. 10.1128/JVI.66.5.3093-3100.1992 / J. Virol. / 5-Azacytidine and RNA secondary structure increase the retrovirus mutation rate by Pathak (1992)
  145. 10.1126/science.1279806 / Science / Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase by Peliska (1992)
  146. 10.1021/bi00250a036 / Biochemistry / Recombinant HIV-1 nucleocapsid protein accelerates HIV-1 reverse transcriptase catalyzed DNA strand transfer reactions and modulates RNaseH activity by Peliska (1994)
  147. 10.1093/nar/27.3.795 / Nucleic Acids Res. / A conserved bulged adenosine in a peripheral duplex of the antigenomic HDV self-cleaving RNA reduces kinetic trapping of inactive conformations by Perrotta (1999)
  148. 10.1038/33192 / Nature / Dual function of the messenger RNA cap structure in poly(A)-tail-promoted translation in yeast by Preiss (1998)
  149. 10.1093/nar/20.23.6261 / Nucleic Acids Res. / HIV-1 promoter insertion revealed by selective detection of chimeric provirus-host gene transcripts by Raineri (1992)
  150. 10.1016/S0968-0004(98)01256-0 / Trends Biochem. Sci. / Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: Significance for viral replication by Rein (1998)
  151. 10.1128/JVI.67.7.3997-4005.1993 / J. Virol. / Packaging of human immunodeficiency virus type 1 RNA requires cis-acting sequences outside the 5′ leader region by Richardson (1993)
  152. 10.1128/JVI.67.5.2681-2688.1993 / J. Virol. / Simian immunodeficiency virus RNA is efficiently encapsidated by human immunodeficiency virus type 1 particles by Rizvi (1993)
  153. 10.1074/jbc.270.25.15005 / J. Biol. Chem. / Influence of Human Immunodeficiency Virus nucleocapsid protein on synthesis and strand transfer by the reverse transcriptase in vitro by Rodriquez-Rodriquez (1995)
  154. 10.1128/JVI.69.8.5156-5163.1995 / J. Virol. / Interaction of nuclear protein p140 with human immunodeficiency virus type 1 TAR RNA in mitogenactivated primary human T lymphocytes by Rothblum (1995)
  155. 10.1006/viro.1996.0077 / Virology / Inhibition of HIV-1 replication in viral mutants with altered TAR RNA stem structures by Rounseville (1996)
  156. 10.1128/JVI.65.2.632-640.1991 / J. Virol. / The integrity of the stem structure of human immunodeficiency virus type 1 Tat-responsive sequence of RNA is required for interaction with the interferon-induced 68,000-Mr protein kinase by Roy (1991)
  157. 10.1126/science.2180064 / Science / Control of the interferon-induced 68-kilodalton protein kinase by the HIV-1 tat gene product by Roy (1990)
  158. {'key': '10.1016/S1054-3589(00)48003-8_BIB158', 'first-page': '1460', 'article-title': 'A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics', 'volume': '95', 'author': 'SantaLucia', 'year': '1998'} / A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics by SantaLucia (1998)
  159. 10.1021/bi962590c / Biochemistry / Thermodynamics and NMR of internal GT mismatches in DNA by SantaLucia (1997)
  160. 10.1128/JVI.71.12.9295-9305.1997 / J. Virol. / Distinct functions and requirements for the Cys-His boxes of the human immunodeficiency virus type 1 nucleocapsid protein during RNA encapsidation and replication by Schwartz (1997)
  161. 10.1126/science.279.5358.1940 / Science / RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting by Sclavi (1998)
  162. {'key': '10.1016/S1054-3589(00)48003-8_BIB162', 'first-page': '3618', 'article-title': 'Human adult T-cell leukemia virus: Complete nucleotide sequence of the provirus genome integrated in leukemia cell DNA', 'volume': '80', 'author': 'Seiki', 'year': '1983'} / Human adult T-cell leukemia virus: Complete nucleotide sequence of the provirus genome integrated in leukemia cell DNA by Seiki (1983)
  163. {'key': '10.1016/S1054-3589(00)48003-8_BIB163', 'first-page': '7492', 'article-title': 'Direct evidence for translational regulation by leader RNA and Tat protein of human immunodeficiency virus type 1', 'volume': '87', 'author': 'SenGupta', 'year': '1990'} / Direct evidence for translational regulation by leader RNA and Tat protein of human immunodeficiency virus type 1 by SenGupta (1990)
  164. 10.1038/2017 / Nature Med. / Identification of a new human immunodeficiency virus type 1 distinct from group M and group O by Simon (1998)
  165. {'key': '10.1016/S1054-3589(00)48003-8_BIB165', 'first-page': '4945', 'article-title': 'Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro', 'volume': '91', 'author': 'Skripkin', 'year': '1994'} / Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro by Skripkin (1994)
  166. 10.1006/viro.1998.9400 / Virology / Intracellular trafficking and interactions of the HIV-1 Tat protein by Stauber (1998)
  167. 10.1128/JVI.70.10.6542-6552.1996 / J. Virol. / Autogenous regulation of RNA translation and packaging by Rous sarcoma virus Pr76Gag by Sonstegard (1996)
  168. 10.1016/0092-8674(90)90455-N / Cell / Overexpression of TAR sequences renders cells resistant to human immunodeficiency virus replication by Sullenger (1990)
  169. 10.1128/JVI.65.12.6811-6816.1991 / J. Virol. / Analysis of transacting response decoy RNA-mediated inhibition of human immunodeficiency virus type 1 transactivation by Sullenger (1991)
  170. 10.1021/bi971218+ / Biochemistry / Effect of RNA secondary structure of RNA cleavage catalyzed by HIV-1 Reverse Transcriptase by Suo (1997)
  171. 10.1021/bi971217h / Biochemistry / Effect of RNA secondary structure on the kinetics of DNA synthesis catalyzed by HIV-1 Reverse Transcriptase by Suo (1997)
  172. 10.1021/bi971963m / Biochemistry / RNA secondary structure switching during DNA synthesis catalyzed by HIV-1 Reverse Transcriptase by Suo (1998)
  173. 10.1128/JVI.68.11.7001-7007.1994 / J. Virol. / LA autoantigen alleviates translational repression by the 5′ leader sequence of the human immunodeficiency virus type 1 RNA by Svitkin (1994)
  174. {'key': '10.1016/S1054-3589(00)48003-8_BIB174', 'first-page': '1403', 'article-title': 'The human 64-kDa polyadenylation factor contains a ribonucleoprotein-type RNA binding domain and unusual auxiliary motifs', 'volume': '89', 'author': 'Takagaki', 'year': '1992'} / The human 64-kDa polyadenylation factor contains a ribonucleoprotein-type RNA binding domain and unusual auxiliary motifs by Takagaki (1992)
  175. 10.1016/S0092-8674(00)82000-0 / Cell / The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during Bcell differentiation by Takagaki (1997)
  176. 10.1007/s007050050083 / Arch. Virol. / Electron microscopic study of human immunodeficiency virus type 1 (HIV-1) core structure: Two RNA strands in the core of mature and budding particles by Takasaki (1997)
  177. 10.1128/JVI.65.8.4387-4397.1991 / J. Virol. / Abortive reverse transcription by mutants of Moloney murine leukemia virus deficient in the reverse transcriptase-associated RNase H function by Tanese (1991)
  178. {'key': '10.1016/S1054-3589(00)48003-8_BIB178', 'series-title': 'Reverse Transcriptase', 'first-page': '49', 'author': 'Telesnitsky', 'year': '1993'} / Reverse Transcriptase by Telesnitsky (1993)
  179. {'key': '10.1016/S1054-3589(00)48003-8_BIB179', 'series-title': 'Retroviruses', 'first-page': '121', 'author': 'Telesnitsky', 'year': '1997'} / Retroviruses by Telesnitsky (1997)
  180. 10.1101/gad.5.7.1277 / Genes Dev. / Effect of RNA secondary structure on polyadenylation site selection by Tiley (1991)
  181. 10.1006/jmbi.1998.1929 / J. Mol. Biol. / Cis-acting elements required for strong stop acceptor template selection during Moloney murine leukemia virus reverse transcription by Topping (1998)
  182. 10.1128/JVI.68.9.5863-5870.1994 / J. Virol. / DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein by Tsuchihashi (1994)
  183. 10.1128/JVI.73.3.2499-2508.1999 / J. Virol. / Functional domains of Tat required for efficient human immunodeficiency type 1 reverse transcription by Ulich (1999)
  184. {'key': '10.1016/S1054-3589(00)48003-8_BIB184', 'first-page': '2108', 'article-title': 'The human immunodeficiency virus type 1 polyadenylylation signal: A 3′ long terminal repeat element upstream of the AAUAAA necessary for efficient polyadenylylation', 'volume': '88', 'author': 'Valsamakis', 'year': '1991'} / The human immunodeficiency virus type 1 polyadenylylation signal: A 3′ long terminal repeat element upstream of the AAUAAA necessary for efficient polyadenylylation by Valsamakis (1991)
  185. 10.1128/MCB.12.9.3699 / Mol. Cell Biol. / Elements upstream of the AAUAAA within the human immunodeficiency virus polyadenylation signal are required for efficient polyadenylation in vitro by Valsamakis (1992)
  186. {'key': '10.1016/S1054-3589(00)48003-8_BIB186', 'series-title': 'Encyclopedia of Virology', 'first-page': '1334', 'author': 'van Duin', 'year': '1994'} / Encyclopedia of Virology by van Duin (1994)
  187. 10.1006/viro.1998.9096 / Virology / The first strand transfer during HIV-1 reverse transcription can occur either intramolecularly or intermolecularly by van Wamel (1998)
  188. 10.1006/viro.1997.8786 / Virology / Determination of the minimal amount of Tat activity required for human immunodeficiency virus type 1 replication by Verhoef (1997)
  189. 10.1093/nar/25.3.496 / Nucleic Acids Res. / Optimal Tat-mediated activation of the HIV1 LTR promoter requires a full-length TAR RNA hairpin by Verhoef (1997)
  190. 10.1128/JVI.66.8.4824-4833.1992 / J. Virol. / Role of the TAR RNA splicing in translational regulation of simian immunodeficiency virus from rhesus macaques by Viglianti (1992)
  191. 10.1016/S0092-8674(00)80939-3 / Cell / A novel CDK9associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA by Wei (1998)
  192. 10.1101/gad.5.2.244 / Genes Dev. / Occlusion of the HIV poly(A) site by Weichs an der Glon (1991)
  193. 10.1002/j.1460-2075.1991.tb07938.x / EMBO J. / Poly(A) site efficiency reflects the stability of complex formation involving the downstream element by Weiss (1991)
  194. 10.1126/science.7528942 / Science / Footprint analysis of replicating murine leukemia virus reverse transcriptase by Wöhrl (1995)
  195. 10.1074/jbc.270.1.325 / J. Biol. Chem. / Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation by Wu (1995)
  196. 10.1128/JVI.70.10.7132-7142.1996 / J. Virol. / Human Immunodeficiency Virus type I nucleocapsid protein reduces reverse transciptase pausing at a secondary structure near the Murine Leukemia Virus polypurine tract by Wu (1996)
  197. 10.1093/nar/25.17.3445 / Nucleic Acids Res. / Inhibition of transcription by the TAR RNA of HIV-1 in a nuclear extract of HeLa cells by Yamamoto (1997)
  198. 10.1128/JVI.70.7.4576-4584.1996 / J. Virol. / The human immunodeficiency virus Tat proteins specifically associate with TAK in vivo and require the carboxyl-terminal domain of RNA polymerase II for function by Yang (1996)
  199. {'key': '10.1016/S1054-3589(00)48003-8_BIB199', 'first-page': '12331', 'article-title': 'TAK, an HIV Tat-associated kinase, is a member of the cyclin-dependent family of protein kinases and is induced by activation of p[eripheral blood lymphocytes and differentiation of promonocytic cell lines', 'volume': '94', 'author': 'Yang', 'year': '1997'} / TAK, an HIV Tat-associated kinase, is a member of the cyclin-dependent family of protein kinases and is induced by activation of p[eripheral blood lymphocytes and differentiation of promonocytic cell lines by Yang (1997)
  200. 10.1016/S0021-9258(18)31721-6 / J. Biol. Chem. / Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription by You (1994)
  201. 10.1101/gad.11.20.2622 / Genes Dev. / Transcriptional elongation factor P-TEFb is required for HIV-1 Tat transactivation in vitro by Zhu (1997)
Dates
Type When
Created 21 years, 3 months ago (May 19, 2004, 12:22 a.m.)
Deposited 4 years, 2 months ago (June 17, 2021, 4:03 p.m.)
Indexed 1 year, 1 month ago (July 15, 2024, 9:58 a.m.)
Issued 25 years, 7 months ago (Jan. 1, 2000)
Published 25 years, 7 months ago (Jan. 1, 2000)
Published Print 25 years, 7 months ago (Jan. 1, 2000)
Funders 0

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@inbook{Berkhout_2000, title={Multiple biological roles associated with the repeat (R) Region of the HIV-I RNA genome}, ISSN={1054-3589}, url={http://dx.doi.org/10.1016/s1054-3589(00)48003-8}, DOI={10.1016/s1054-3589(00)48003-8}, booktitle={HIV-1: Molecular Biology and Pathogenesis Viral Mechanisms}, publisher={Elsevier}, author={Berkhout, Ben}, year={2000}, pages={29–73} }