10.1016/s0968-0004(01)01978-8
Crossref journal-article
Elsevier BV
Trends in Biochemical Sciences (78)
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Rippe, K. (2001). Making contacts on a nucleic acid polymer. Trends in Biochemical Sciences, 26(12), 733–740.

Authors 1
  1. Karsten Rippe (first)
References 46 Referenced 159
  1. 10.1016/S0968-0004(00)89117-3 / Trends Biochem. Sci. / Action at a distance: DNA-looping and initiation of transcription by Rippe (1995)
  2. 10.1007/BF01451681 / Koll. Z. / ber die Gestalt fadenförmiger Moleküle in Lösungen by Kuhn (1934)
  3. 10.1002/recl.19490681203 / Rec. Trav. Chim. / Röntgenuntersuchung gelöster Fadenmoleküle by Kratky (1949)
  4. 10.1063/1.1747547 / J. Chem. Phys. / Intramolecular reaction in polycondensations. I. The theory of linear systems by Jacobson (1950)
  5. 10.1016/S0022-2836(66)80017-7 / J. Mol. Biol. / On the probability of ring closure of λ DNA by Wang (1966)
  6. 10.1016/S0022-2836(83)80198-3 / J. Mol. Biol. / Energetics of DNA twisting. I. Relation between twist and cyclization probability by Shore (1983)
  7. 10.1021/ma00134a028 / Macromolecules / Ring-closure probabilities of twisted wormlike chains. Application to DNA by Shimada (1984)
  8. 10.1016/0022-2836(90)90130-E / J. Mol. Biol. / Application of the method of phage T4 DNA ligase catalyzed ring-closure to the study of DNA structure. I. Computational analysis by Hagerman (1990)
  9. 10.1016/0076-6879(92)12003-9 / Methods Enzymol. / DNA bending, flexibility, and helical repeat by cyclization kinetics by Crothers (1992)
  10. 10.1093/emboj/17.22.6747 / EMBO J. / A systematic analysis of the factors that determine the strength of pre- mRNA splicing enhancers by Graveley (1998)
  11. 10.1021/bi961920q / Biochemistry / Complexes of N antitermination protein of phage λ with specific and nonspecific RNA target sites on the nascent transcript by Van Gilst (1997)
  12. 10.1016/S0076-6879(00)23359-4 / Methods Enzymol. / Quantitative dissection of transcriptional control system: N-dependent antitermination complex of phage λ as regulatory paradigm by Van Gilst (2000)
  13. {'key': '10.1016/S0968-0004(01)01978-8_BIB13', 'series-title': 'Chromatin', 'author': 'van Holde', 'year': '1989'} / Chromatin by van Holde (1989)
  14. 10.1016/S0006-3495(98)74002-0 / Biophys. J. / Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation by Merlitz (1998)
  15. 10.1126/science.3281259 / Science / Action at a distance along a DNA by Wang (1988)
  16. 10.1146/annurev.bb.23.060194.003141 / Annu. Rev. Biophys. Biomol. Struct. / Conformational and thermodynamic properties of supercoiled DNA by Vologodskii (1994)
  17. 10.1016/S0006-3495(95)80161-X / Biophys. J. / Modulation of intramolecular interactions in superhelical DNA by curved sequences: a Monte Carlo simulation study by Klenin (1995)
  18. 10.1063/1.1350579 / J. Chem. Phys. / Kinetics of intrachain reactions of supercoiled DNA: theory and numerical modeling by Klenin (2001)
  19. {'key': '10.1016/S0968-0004(01)01978-8_BIB19', 'series-title': 'Statistical mechanics of chain molecules', 'author': 'Flory', 'year': '1969'} / Statistical mechanics of chain molecules by Flory (1969)
  20. 10.1093/emboj/18.23.6630 / EMBO J. / Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances by Ringrose (1999)
  21. {'key': '10.1016/S0968-0004(01)01978-8_BIB21', 'series-title': 'Physical chemistry of nucleic acids', 'author': 'Bloomfield', 'year': '1974'} / Physical chemistry of nucleic acids by Bloomfield (1974)
  22. 10.1006/jmbi.2000.3921 / J. Mol. Biol. / The effect of the DNA conformation on the rate of NtrC activated transcription of E. coli RNA polymerase σ54 holoenzyme by Schulz (2000)
  23. 10.1126/science.281.5373.60 / Science / Going the distance: a current view of enhancer action by Blackwood (1998)
  24. 10.1046/j.1365-2958.1998.00870.x / Mol. Microbiol. / The function of auxiliary operators by Müller-Hill (1998)
  25. 10.1016/S0168-9525(00)02153-3 / Trends Genet. / Regulation of the L-arabinose operon of Escherichia coli by Schleif (2000)
  26. {'key': '10.1016/S0968-0004(01)01978-8_BIB26', 'series-title': 'DNA Topology and Its Biological Effects', 'first-page': '107', 'article-title': 'Protein–protein interactions and DNA loop formation', 'author': 'Hochschild', 'year': '1990'} / DNA Topology and Its Biological Effects / Protein–protein interactions and DNA loop formation by Hochschild (1990)
  27. 10.1101/sqb.1998.63.167 / Cold Spring Harbor Symp. Quant. Biol. / Gene transcription by recruitment by Zaman (1998)
  28. 10.1016/S0079-6603(08)60624-8 / Progr. Nucleic Acids Res. Mol. Biol. / Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA by Bellomy (1990)
  29. 10.1126/science.3090685 / Science / Upstream operators enhance repression of the lac-promoter by Mossing (1986)
  30. 10.1006/jmbi.1997.1079 / J. Mol. Biol. / Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase-σ 54 holoenzyme by scanning force microscopy by Rippe (1997)
  31. 10.1016/S0968-0004(00)01549-8 / Trends Biochem. Sci. / Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases by Blencowe (2000)
  32. 10.1126/science.1388286 / Science / Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model by van den Engh (1992)
  33. 10.1073/pnas.90.16.7854 / Proc. Natl. Acad. Sci. U. S. A. / Polymer models for interphase chromosomes by Hahnfeldt (1993)
  34. 10.1080/07391102.1994.10508034 / J. Biomol. Struct. Dyn. / The 30 nm chromatin fiber as a flexible polymer by Ostashevsky (1994)
  35. 10.1073/pnas.84.22.7802 / Proc. Natl. Acad. Sci. U. S. A. / Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy by Gerchman (1987)
  36. 10.1073/pnas.97.1.127 / Proc. Natl. Acad. Sci. U. S. A. / Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure by Cui (2000)
  37. 10.1002/j.1460-2075.1993.tb05674.x / EMBO J. / A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro by Schild (1993)
  38. 10.1146/annurev.bb.17.060188.001405 / Annu. Rev. Biophys. Biophys. Chem. / Flexibility of DNA by Hagerman (1988)
  39. 10.1146/annurev.biophys.26.1.139 / Annu. Rev. Biophys. Biomol. Struct. / Flexibility of RNA by Hagerman (1997)
  40. 10.1126/science.271.5250.795 / Science / Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules by Smith (1996)
  41. 10.1006/jmbi.1998.1830 / J. Mol. Biol. / Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility by Rivetti (1998)
  42. 10.1021/ma970381+ / Macromolecules / Persistence length of single-stranded DNA by Tinland (1997)
  43. 10.1006/jmbi.1998.2287 / J. Mol. Biol. / Flexibility of single-stranded DNA: use of gapped duplex helices to determine the persistence lengths of Poly(dT) and Poly(dA) by Mills (1999)
  44. 10.1016/0022-2836(70)90199-3 / J. Mol. Biol. / Conformation of polyuridylic acid in solution by Inners (1970)
  45. 10.1083/jcb.145.2.215 / J. Cell Biol. / Elasticity measurements show the existence of thin rigid cores inside mitotic chromosomes by Houchmandzadeh (1999)
  46. 10.1016/S0960-9822(01)00180-4 / Curr. Biol. / Chromosome elasticity and mitotic polar ejection force measured in living Drosophila embryos by four-dimensional microscopy-based motion analysis by Marshall (2001)
Dates
Type When
Created 22 years, 6 months ago (Feb. 28, 2003, 9:20 a.m.)
Deposited 5 years, 7 months ago (Jan. 7, 2020, 3:22 p.m.)
Indexed 1 month, 2 weeks ago (July 12, 2025, 6:53 p.m.)
Issued 23 years, 9 months ago (Dec. 1, 2001)
Published 23 years, 9 months ago (Dec. 1, 2001)
Published Print 23 years, 9 months ago (Dec. 1, 2001)
Funders 0

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@article{Rippe_2001, title={Making contacts on a nucleic acid polymer}, volume={26}, ISSN={0968-0004}, url={http://dx.doi.org/10.1016/s0968-0004(01)01978-8}, DOI={10.1016/s0968-0004(01)01978-8}, number={12}, journal={Trends in Biochemical Sciences}, publisher={Elsevier BV}, author={Rippe, Karsten}, year={2001}, month=dec, pages={733–740} }