10.1016/s0959-440x(99)80053-0
Crossref journal-article
Elsevier BV
Current Opinion in Structural Biology (78)
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Teichmann, S. A., Chothia, C., & Gerstein, M. (1999). Advances in structural genomics. Current Opinion in Structural Biology, 9(3), 390–399.

Authors 3
  1. Sarah A Teichmann (first)
  2. Cyrus Chothia (additional)
  3. Mark Gerstein (additional)
References 57 Referenced 104
  1. {'key': '10.1016/S0959-440X(99)80053-0_reference0005', 'first-page': '15189', 'article-title': 'Structure-based assignment of the biochemical function of a hypothetical protein: a test case for structural genomics', 'volume': '95', 'author': 'Zarembinski', 'year': '1999'} / Structure-based assignment of the biochemical function of a hypothetical protein: a test case for structural genomics by Zarembinski (1999)
  2. 10.1002/pro.5560070901 / Protein Sci / Class-directed structure determination: foundation for a protein structure initiative by Terwilliger (1998)
  3. 10.1016/S0969-2126(98)00030-6 / Structure / The Argonne structural genomics workshop: Lamaze class for the birth of a new science by Shapiro (1998)
  4. 10.1126/science.270.5235.397 / Science / The minimal gene complement of Mycoplasma genitalium by Fraser (1995)
  5. {'key': '10.1016/S0959-440X(99)80053-0_bib5', 'first-page': '2444', 'article-title': 'Improved tools for biological sequence comparison', 'volume': '85', 'author': 'Pearson', 'year': '1988'} / Improved tools for biological sequence comparison by Pearson (1988)
  6. 10.1016/0022-2836(81)90087-5 / J Mol Biol / Identification of common molecular subsequences by Smith (1981)
  7. 10.1016/S0022-2836(05)80360-2 / J Mol Biol / Basic local alignment search tool by Altschul (1990)
  8. 10.1016/S0022-2836(05)80134-2 / J Mol Biol / SCOP a structural classification of proteins database for the investigation of sequences and structures by Murzin (1995)
  9. 10.1016/S0969-2126(97)00260-8 / Structure / CATH —a hierarchic classification of protein domain structures by Orengo (1997)
  10. {'key': '10.1016/S0959-440X(99)80053-0_bib10', 'series-title': 'Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology', 'first-page': '348', 'author': 'Scharf', 'year': '1994'} / Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology by Scharf (1994)
  11. 10.1016/S0168-9525(97)01224-9 / Trends Genet / PEDANTic genome analysis by Frishman (1997)
  12. 10.1038/nsb0897-626 / Nat Struct Biol / Protein structural classes in five complete genomes by Frishman (1997)
  13. 10.1006/jmbi.1997.1412 / J Mol Biol / A structural census of genomes: comparing bacterial, eukaryotic and archaeal genomes in terms of protein structure by Gerstein (1997)
  14. 10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J / Proteins / Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census by Gerstein (1998)
  15. 10.1016/S1359-0278(98)00066-2 / Fold Des / How representative are the known structures of the proteins in a complete genome? A comprehensive structural census by Gerstein (1998)
  16. {'key': '10.1016/S0959-440X(99)80053-0_reference0080', 'first-page': '6073', 'article-title': 'Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships', 'volume': '95', 'author': 'Brenner', 'year': '1998'} / Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships by Brenner (1998)
  17. 10.1006/jmbi.1998.2221 / J Mol Biol / Sequence comparisons using multiple sequences detect twice as many remote homologues as pairwise methods by Park (1998)
  18. 10.1093/nar/25.17.3389 / Nucleic Acids Res / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
  19. 10.1006/jmbi.1998.1884 / J Mol Biol / Homology-based fold predictions for Mycoplasma genitalium proteins by Huynen (1998)
  20. {'key': '10.1016/S0959-440X(99)80053-0_reference0100', 'first-page': '14658', 'article-title': 'Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplication and domain rearrangement', 'volume': '95', 'author': 'Teichmann', 'year': '1998'} / Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplication and domain rearrangement by Teichmann (1998)
  21. 10.1101/gr.9.1.17 / Genome Res / Distribution of protein folds in the three superkingdoms of life by Wolf (1999)
  22. 10.1093/bioinformatics/14.5.423 / Biointormatics / Removing near-neighbour redundancy from large protein sequence collections by Holm (1998)
  23. 10.1002/pro.5560070620 / Protein Sci / Fold prediction by a hierarchy of sequence, threading and modelling methods by Jaroszewski (1998)
  24. 10.1016/S1359-0278(98)00034-0 / Fold Des / Fold and function predictions for Mycoplasma genitalium proteins by Rychlewski (1998)
  25. {'key': '10.1016/S0959-440X(99)80053-0_reference0125', 'first-page': '13597', 'article-title': 'Large-scale protein structure modeling of the Saccharomyces cerevisiae genome', 'volume': '95', 'author': 'Sanchez', 'year': '1998'} / Large-scale protein structure modeling of the Saccharomyces cerevisiae genome by Sanchez (1998)
  26. 10.1126/science.274.5287.546 / Science / Life with 6000 genes by Goffeau (1996)
  27. 10.1038/351497a0 / Nature / A search for the most stable folds of protein chains by Finkelstein (1991)
  28. 10.1002/prot.340130308 / Proteins / Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a database of known protein conformations by Sippl (1992)
  29. 10.1038/358086a0 / Nature / A new approach to protein fold recognition by Jones (1992)
  30. {'key': '10.1016/S0959-440X(99)80053-0_reference0150', 'first-page': '11929', 'article-title': 'Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium', 'volume': '94', 'author': 'Fischer', 'year': '1997'} / Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium by Fischer (1997)
  31. 10.1093/protein/11.12.1129 / Protein Eng / Systematic fold recognition analysis of the sequences encoded by the genome of Mycoplasma pneumoniae by Grandori (1998)
  32. 10.1002/(SICI)1097-0134(199703)27:3<329::AID-PROT1>3.0.CO;2-8 / Proteins / Seventy-five percent accuracy in protein secondary structure prediction by Frishman (1997)
  33. 10.1016/S0076-6879(96)66034-0 / Methods Enzymol / GOR method for predicting protein secondary structure from an amino acid sequence by Garnier (1996)
  34. 10.1002/yea.320090703 / Yeast / How many yeast genes code for membrane-spanning proteins? by Goffeau (1993)
  35. 10.1002/pro.5560040318 / Protein Sci / EXTRA-REF: prediction of helical transmembrane segments at 95% accuracy by Rost (1995)
  36. 10.1016/S0076-6879(96)66033-9 / Methods Enzymol / PHD: predicting one-dimensional protein secondary structure by profile-based neural networks by Rost (1996)
  37. 10.1002/(SICI)1097-0134(199708)28:4<465::AID-PROT1>3.0.CO;2-9 / Proteins / Are there dominant membrane protein families with a given number of helices? by Arkin (1997)
  38. 10.1002/pro.5560070121 / Protein Sci / How many membrane proteins are there? by Boyd (1998)
  39. 10.1016/S0014-5793(98)00095-7 / FEBS Lett / Do transmembrane protein superfolds exist? by Jones (1998)
  40. 10.1002/pro.5560070420 / Protein Sci / Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms by Wallin (1998)
  41. 10.1093/nar/27.1.251 / Nucleic Acids Res / The PRESAGE database for structural genomics by Brenner (1999)
  42. 10.1038/250194a0 / Nature / Chemical and biological evolution of a nucleotide-binding protein by Rossmann (1974)
  43. 10.1006/jmbi.1997.1003 / J Mol Biol / Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module by Riley (1997)
  44. 10.1038/357543a0 / Nature / One thousand families for the molecular biologist by Chothia (1992)
  45. 10.1128/jb.177.6.1585-1588.1995 / J Bacteriol / Widespread protein sequence similarities: origins of E coli genes by Labedan (1995)
  46. 10.1038/378140a0 / Nature / At least one third of the proteins in Haemophilus influenzae arose from gene duplications by Brenner (1995)
  47. {'key': '10.1016/S0959-440X(99)80053-0_bib47', 'first-page': '11921', 'article-title': 'Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications', 'volume': '92', 'author': 'Koonin', 'year': '1995'} / Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications by Koonin (1995)
  48. 10.1046/j.1365-2958.1997.4821861.x / Mol Microbiol / Comparison of archeael and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for archaea by Koonin (1997)
  49. 10.1146/annurev.biophys.26.1.597 / Annu Rev Biophys Biomol Struct / Protein folds in the all-β and all-α classes by Chothia (1997)
  50. {'key': '10.1016/S0959-440X(99)80053-0_bib50', 'first-page': '11911', 'article-title': 'A structural census of the current population of protein sequences', 'volume': '94', 'author': 'Gerstein', 'year': '1997'} / A structural census of the current population of protein sequences by Gerstein (1997)
  51. 10.1006/jmbi.1994.1104 / J Mol Biol / Hidden Markov models in computational biology —applications to protein modelling by Krogh (1994)
  52. 10.1093/bioinformatics/14.9.755 / Bioinformatics / Profile hidden Markov models by Eddy (1998)
  53. 10.1111/j.1574-6976.1998.tb00371.x / FEMS Microbiol Rev / Comparing microbial genomes in terms of protein structure: surveys of a finite parts list by Gerstein (1998)
  54. 10.1016/S0076-6879(96)66035-2 / Methods Enzymol / Analysis of compositionally biased regions in sequence databases by Wootton (1996)
  55. 10.1093/bioinformatics/14.2.144 / Bioinformatics / DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in singleand multi-domain proteins by Park (1998)
  56. {'key': '10.1016/S0959-440X(99)80053-0_bib56', 'first-page': '10268', 'article-title': 'A minimal gene set for cellular life derived by comparison of complete bacterial genomes', 'volume': '93', 'author': 'Mushegian', 'year': '1996'} / A minimal gene set for cellular life derived by comparison of complete bacterial genomes by Mushegian (1996)
  57. 10.1006/jmbi.1999.2583 / J Mol Biol / GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences by Jones (1999)
Dates
Type When
Created 23 years, 1 month ago (July 25, 2002, 1:27 p.m.)
Deposited 2 years, 4 months ago (April 10, 2023, 9:23 p.m.)
Indexed 1 month, 3 weeks ago (July 7, 2025, 8:04 a.m.)
Issued 26 years, 3 months ago (June 1, 1999)
Published 26 years, 3 months ago (June 1, 1999)
Published Print 26 years, 3 months ago (June 1, 1999)
Funders 0

None

@article{Teichmann_1999, title={Advances in structural genomics}, volume={9}, ISSN={0959-440X}, url={http://dx.doi.org/10.1016/s0959-440x(99)80053-0}, DOI={10.1016/s0959-440x(99)80053-0}, number={3}, journal={Current Opinion in Structural Biology}, publisher={Elsevier BV}, author={Teichmann, Sarah A and Chothia, Cyrus and Gerstein, Mark}, year={1999}, month=jun, pages={390–399} }