DOI: 10.1016/s0959-440x(99)80050-5. Progress in protein structure prediction: Assessment of CASP3

Progress in protein structure prediction: Assessment of CASP3

10.1016/s0959-440x(99)80050-5

Crossref journal-article

Elsevier BV

Current Opinion in Structural Biology (78)

Bibliography

Sternberg, M. J., Bates, P. A., Kelley, L. A., & MacCallum, R. M. (1999). Progress in protein structure prediction: Assessment of CASP3. Current Opinion in Structural Biology, 9(3), 368â373.

Authors 4

Michael JE Sternberg (first)
Paul A Bates (additional)
Lawrence A Kelley (additional)
Robert M MacCallum (additional)

References 34 Referenced 80

10.1038/5794 / Nat Struct Biol / A brighter future for protein structure prediction by Koehl (1999)
10.1002/(SICI)1097-0134(1997)1+<59::AID-PROT9>3.0.CO;2-J / Proteins Suppl / Model building by comparison: a combination of expert knowledge and computer automation by Bates (1997)
10.3109/10409239409086797 / Crit Rev Biochem Mol Biol / Knowledge-based protein modeling by Johnson (1994)
10.1002/pro.5560050516 / Protein Sci / Protein fold recognition using sequence-derived predictions by Fischer (1996)
10.1002/pro.5560060807 / Protein Sci / Bayesian statistical analysis of protein side-chain rotamer preferences by Dunbrack (1997)
10.1093/nar/25.17.3389 / Nucleic Acids Res / Gapped BLAST and PSI-BLAST: a new generation of protein data base search programs by Altschul (1997)
10.1002/prot.340130308 / Proteins / Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations by Sippl (1992)
10.1038/358086a0 / Nature / A new approach to protein fold recognition by Jones (1992)
10.1002/(SICI)1097-0134(199610)26:2<172::AID-PROT7>3.0.CO;2-I / Proteins / Evaluation of threading specificity and accuracy by Bryant (1996)
10.1093/bioinformatics/14.10.846 / Bioinformatics / Hidden Markov models for detecting remote protein homologies by Karplus (1998)
10.1002/pro.5560031118 / Protein Sci / Protein structural similarities predicted by a sequence-structure compatibility method by Matsuo (1994)
10.1006/jmbi.1996.0325 / J Mol Biol / Protein fold recognition by mapping predicted secondary structures by Russell (1996)
10.1093/nar/27.1.254 / Nucleic Acids Res / SCOP: a structural classification of proteins database by Hubbard (1999)
10.1006/jmbi.1997.1595 / J Mol Biol / Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments by Ortiz (1998)
10.1002/(SICI)1096-987X(19970715)18:9<1222::AID-JCC10>3.0.CO;2-7 / J Comput Chem / New optimization method for conformational energy calculations on polypeptides, conformational space annealing by Lee (1997)
10.1002/(SICI)1096-987X(199705)18:7<874::AID-JCC2>3.0.CO;2-O / J Comput Chem / A united-residue force field for off-lattice protein-structure simulations. II Paramenterization of local interactions and determination of the weights by Liwo (1997)
10.1002/(SICI)1097-0134(1997)1+<172::AID-PROT22>3.0.CO;2-K / Proteins Suppl / Analysis of the predicted structures of domain 1 of protein g3 (T0030) and NK-lysin (T0042) by Osguthorpe (1997)
10.1006/jmbi.1997.0959 / J Mol Biol / Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions by Simons (1997)
10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A / Proteins / Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins by Simons (1999)
10.1006/jmbi.1993.1413 / J Mol Biol / Prediction of protein secondary structure at better than 70% accuracy by Rost (1993)
{'key': '10.1016/S0959-440X(99)80050-5_reference0105', 'first-page': '6073', 'article-title': 'Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships', 'volume': '95', 'author': 'Brenner', 'year': '1998'} / Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships by Brenner (1998)
10.1006/jmbi.1998.2221 / J Mol Biol / Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods by Park (1998)
{'key': '10.1016/S0959-440X(99)80050-5_bib23', 'first-page': '11929', 'article-title': 'Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium', 'volume': '94', 'author': 'Fischer', 'year': '1997'} / Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium by Fischer (1997)
{'key': '10.1016/S0959-440X(99)80050-5_reference0120', 'first-page': '14658', 'article-title': 'Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements', 'volume': '95', 'author': 'Teichmann', 'year': '1998'} / Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements by Teichmann (1998)
10.1006/jmbi.1998.1884 / J Mol Biol / Homology-based fold recognition for Mycoplasma genitalium proteins by Huynen (1998)
10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J / Proteins / Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census by Gerstein (1998)
10.1006/jmbi.1998.2061 / J Mol Biol / Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: Identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity by Fetrow (1998)
10.1016/S1359-0278(98)00034-0 / Fold Des / Fold and function predictions for Mycoplasma genitalium proteins by Rychlewski (1998)
{'key': '10.1016/S0959-440X(99)80050-5_reference0145', 'first-page': '13597', 'article-title': 'Large-scale protein structure modeling of the Saccharomyces cerevisiae genome', 'volume': '95', 'author': 'Sanchez', 'year': '1998'} / Large-scale protein structure modeling of the Saccharomyces cerevisiae genome by Sanchez (1998)
10.1093/nar/27.1.275 / Nucleic Acids Res / The CATH database provides insights into protein structure/function relationships by Orengo (1999)
10.1093/nar/27.1.244 / Nucleic Acids Res / Protein folds and families: sequence and structure alignments by Holm (1999)
10.1093/nar/27.1.240 / Nucleic Acid Res / MMDB: Entrez's 3D structure database by Bauer (1999)
10.1006/jmbi.1998.2043 / J Mol Biol / Supersites within superfolds —binding site similarity in the absence of homology by Russell (1999)
10.1016/S1359-0278(96)00021-1 / Fold Des / Optimum superimposition of protein structures —ambiguities and implications by Feng (1996)

Dates

Type	When
Created	23 years, 1 month ago (July 25, 2002, 1:27 p.m.)
Deposited	6 years, 4 months ago (April 24, 2019, 6:21 p.m.)
Indexed	3 weeks, 2 days ago (Aug. 6, 2025, 9:19 a.m.)
Issued	26 years, 2 months ago (June 1, 1999)
Published	26 years, 2 months ago (June 1, 1999)
Published Print	26 years, 2 months ago (June 1, 1999)

Funders 0

None

BibTeX

@article{Sternberg_1999, title={Progress in protein structure prediction: Assessment of CASP3}, volume={9}, ISSN={0959-440X}, url={http://dx.doi.org/10.1016/s0959-440x(99)80050-5}, DOI={10.1016/s0959-440x(99)80050-5}, number={3}, journal={Current Opinion in Structural Biology}, publisher={Elsevier BV}, author={Sternberg, Michael JE and Bates, Paul A and Kelley, Lawrence A and MacCallum, Robert M}, year={1999}, month=jun, pages={368–373} }

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