10.1016/s0959-440x(99)80040-2
Crossref journal-article
Elsevier BV
Current Opinion in Structural Biology (78)
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McFail-Isom, L., Sines, C. C., & Williams, L. D. (1999). DNA structure: cations in charge? Current Opinion in Structural Biology, 9(3), 298–304.

Authors 3
  1. Lori McFail-Isom (first)
  2. Chad C Sines (additional)
  3. Loren Dean Williams (additional)
References 58 Referenced 173
  1. 10.1016/0022-2836(85)90251-7 / J Mol Biol / On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities by Diekmann (1985)
  2. 10.1021/bi00387a003 / Biochemistry / Cationic metals promote sequencedirected DNA bending by Laundon (1987)
  3. {'key': '10.1016/S0959-440X(99)80040-2_bib3', 'first-page': '79', 'article-title': 'Influence of temperature and ionic strength on electrophoretic mobility of synthetic DNA fragments', 'volume': '24', 'author': 'Shlyakhtenko', 'year': '1990', 'journal-title': 'Mol Biol (Moscow)'} / Mol Biol (Moscow) / Influence of temperature and ionic strength on electrophoretic mobility of synthetic DNA fragments by Shlyakhtenko (1990)
  4. 10.1006/jmbi.1994.1115 / J Mol Biol / Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA by Brukner (1994)
  5. 10.1074/jbc.270.50.29945 / J Biol Chem / Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays by Dlakic (1995)
  6. {'key': '10.1016/S0959-440X(99)80040-2_bib6', 'first-page': '9515', 'article-title': 'DNA bending by hexamethylene-tethered ammonium ions', 'volume': '93', 'author': 'Strauss', 'year': '1996'} / DNA bending by hexamethylene-tethered ammonium ions by Strauss (1996)
  7. 10.1016/0022-2836(82)90157-7 / J Mol Biol / Mechanics of sequence-dependent stacking of bases in B-DNA by Calladine (1982)
  8. 10.1093/nar/26.8.1906 / Nucleic Acids Res / DNA bending: the prevalence of kinkiness and the virtues of normality by Dickerson (1998)
  9. 10.1016/S0006-3495(98)77501-0 / Biophys J / Structural equilibrium of DNA represented with different force fields by Feig (1998)
  10. 10.1006/jmbi.1998.1875 / J Mol Biol / Cation-regulated self-association of “synapsable” DNA duplexes by Fahlman (1998)
  11. 10.1038/287755a0 / Nature / Crystal structure analysis of a complete turn of B-DNA by Wing (1980)
  12. 10.1021/bi973073c / Biochemistry / The B-DNA dodecamer at high resolution reveals a spine of water on sodium by Shui (1998)
  13. 10.1021/bi982063o / Biochemistry / Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations by Shui (1998)
  14. 10.1016/S0022-2836(76)80109-X / J Mol Biol / Crystallographic refinement of yeast phenylalanine transfer RNA at 2.5 A resolution by Jack (1976)
  15. 10.1016/S0022-2836(77)80054-5 / J Mol Biol / A crystallographic study of metal-binding to yeast phenylalanine transfer RNA by Jack (1977)
  16. 10.1038/38444 / Nature / Crystal structure of the nucleosome core particle at 2.8 A resolution by Luger (1997)
  17. 10.1107/S0108768185002087 / Acta Crystallogr B / Anisotropic thermal parameter refinement of the DNA dodecamer CGCGAATTCGCG by the segmented rigid-body method by Holbrook (1985)
  18. 10.1146/annurev.pc.46.100195.003301 / Annu Rev Phys Chem / Salt-nucleic acid interactions by Anderson (1995)
  19. 10.1016/S0006-3495(95)80281-X / Biophys J / Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR by Stein (1995)
  20. 10.1016/S0006-3495(98)78021-X / Biophys J / DNA bending by small, mobile multivalent cations by Rouzina (1998)
  21. 10.1006/jmbi.1998.2467 / J Mol Biol / Determination of the residence time of water molecules hydration B′-DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy by Phan (1999)
  22. 10.1021/bi00314a009 / Biochemistry / 23Na NMR relaxation study of the effects of conformation and base composition on the interactions of counterions with double-helical DNA by Nordenskiold (1984)
  23. 10.1021/bi00425a004 / Biochemistry / Evidence from basepair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature by Leroy (1988)
  24. 10.1093/nar/18.4.821 / Nucleic Acids Res / Proton exchange and base-pair opening kinetics in 5′-d (CGCGAATTCGCG) -3′ and related dodecamers by Moe (1990)
  25. 10.1016/S0006-3495(97)78296-1 / Biophys J / Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics by Hammermann (1997)
  26. 10.1038/243150a0 / Nature / Double helix at atomic resolution by Rosenberg (1973)
  27. 10.1016/0022-2836(83)90033-5 / J Mol Biol / Ordered water structure around a B-DNA dodecamer. A quantitative study by Kopka (1983)
  28. 10.1016/S0022-2836(83)80181-8 / J Mol Biol / Structure of the B DNA cationic shell as revealed by an X-ray diffraction study of CsDNA. Sequence-specific cationic stabilization of B form DNA by Bartenev (1983)
  29. 10.1006/jmbi.1998.2327 / J Mol Biol / Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending by Hud (1999)
  30. 10.1021/ja9811039 / J Am Chem Soc / Ammonium ion as an NMR probe for monovalent cation coordination sites of DNA quadruplexes by Hud (1998)
  31. 10.1021/ja960459m / J Am Chem Soc / Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: fractional occupancy of electronegative pockets by Young (1997)
  32. 10.1006/jmbi.1998.1962 / J Mol Biol / Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn by Young (1998)
  33. 10.1080/07391102.1985.10507618 / J Biomol Struct Dyn / The dependence of the surface electrostatic potential of B-DNA on environmental factors by Lavery (1985)
  34. 10.1002/(SICI)1097-0282(199812)46:7<503::AID-BIP8>3.0.CO;2-V / Biopolymers / An electrostatic model for the dielectric effects, the adsorption of multivalent ions, and the bending of B-DNA by Stigter (1998)
  35. 10.1038/2901 / Nat Struct Biol / RNA shows its metal by Draper (1998)
  36. 10.1080/07391102.1989.10506519 / J Biomol Struct Dyn / An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups by Manning (1989)
  37. {'key': '10.1016/S0959-440X(99)80040-2_bib37', 'first-page': '1118', 'article-title': 'Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending', 'volume': '76', 'author': 'Mirzabekov', 'year': '1979'} / Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending by Mirzabekov (1979)
  38. 10.1126/science.7997878 / Science / DNA bending by asymmetric phosphate neutralization by Strauss (1994)
  39. 10.1021/bi9705467 / Biochemistry / Effects of neutralization pattern and stereochemistry on DNA bending by methylphosphonate substitutions by Strauss-Soukup (1997)
  40. 10.1016/S1074-5521(96)90135-0 / Chem Biol / DNA bending by a phantom protein by Strauss (1996)
  41. 10.1021/bi972146p / Biochemistry / Electrostatic effects in DNA bending by GCN4 mutants by Strauss-Soukup (1998)
  42. 10.1021/bi962602u / Biochemistry / Regioselective effect of zwitterionic DNA substitutions on DNA alkylation: evidence for a strong side chain orientational preference by Dande (1997)
  43. 10.1021/ja982039y / J Am Chem Soc / Control over the localization of positive charge in DNA: the effect on duplex DNA and RNA stability by Heystek (1998)
  44. 10.1038/328178a0 / Nature / DNA bend direction by phase sensitive detection by Zinkel (1987)
  45. 10.1021/bi00052a018 / Biochemistry / How the structure of an adenine tract depends on sequence context: a new model for the structure of TnAn DNA sequences by Price (1993)
  46. 10.1016/0092-8674(87)90702-1 / Cell / The unusual conformation adopted by the adenine tracts in kinetoplast DNA by Burkhoff (1987)
  47. 10.1021/bi00292a025 / Biochemistry / 23Na nuclear magnetic resonance studies of cation-deoxyribonucleic acid interactions by Bleam (1983)
  48. 10.1002/bip.360311111 / Biopolymers / A re-examination of Mg-25 (2+) NMR in DNA solution —site heterogeneity and cation competition effects by Braunlin (1991)
  49. 10.1016/S0006-3495(98)74019-6 / Biophys J / A gel electrophoresis study of the competitive effects of monovalent counterion on the extent of divalent counterions binding to DNA by Li (1998)
  50. 10.1021/ja9704085 / J Am Chem Soc / Localization of divalent metal ions in the minor groove of DNA A-tracts by Hud (1997)
  51. 10.1021/ja9832919 / J Am Chem Soc / The Dickerson Drew B-DNA dodecamer revisited at atomic resolution by Tereshko (1999)
  52. 10.1006/jmbi.1998.1743 / J Mol Biol / The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon by O'Brien (1998)
  53. 10.1038/2960 / Nat Struct Biol / A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor by Basu (1998)
  54. 10.1021/bi00378a025 / Biochemistry / Interactions between an anthracycline antibiotic and DNA: molecular structure of daunomycin complexed to d (CpGpTpApCpG) at 1.2 A resolution by Wang (1987)
  55. 10.1146/annurev.bb.17.060188.001013 / Annu Rev Biophys Biophys Chem / Water: an integral part of nucleic acid structure by Westhof (1988)
  56. 10.1016/S0014-5793(98)01295-2 / FEBS Lett / The structure of the most studied DNA fragment changes under the influence of ions: a new packing of d (CGCGAATTCGCG) by Liu (1998)
  57. 10.1021/bi982201+ / Biochemistry / Divalent cations stabilize unstacked conformations of DNA and RNA by interacting with base π systems by McFail-Isom (1998)
  58. 10.1021/bi00634a007 / Biochemistry / Magnetic resonance studies of the conformation of enzyme-bound adenyl (3′→5′) uridine and adenosine 5′-triphosphate on RNA polymerase from Escherichia coli by Bean (1977)
Dates
Type When
Created 23 years, 1 month ago (July 25, 2002, 8:10 a.m.)
Deposited 6 years, 3 months ago (April 30, 2019, 7:56 p.m.)
Indexed 5 days, 15 hours ago (Aug. 21, 2025, 2:07 p.m.)
Issued 26 years, 2 months ago (June 1, 1999)
Published 26 years, 2 months ago (June 1, 1999)
Published Print 26 years, 2 months ago (June 1, 1999)
Funders 0

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@article{McFail_Isom_1999, title={DNA structure: cations in charge?}, volume={9}, ISSN={0959-440X}, url={http://dx.doi.org/10.1016/s0959-440x(99)80040-2}, DOI={10.1016/s0959-440x(99)80040-2}, number={3}, journal={Current Opinion in Structural Biology}, publisher={Elsevier BV}, author={McFail-Isom, Lori and Sines, Chad C and Williams, Loren Dean}, year={1999}, month=jun, pages={298–304} }