Crossref
journal-article
Elsevier BV
Current Opinion in Structural Biology (78)
References
69
Referenced
127
10.1038/nsb1097-805
/ Nat Struct Biol / Functional rapidly folding proteins from simplified ammo acid sequences by Riddle (1997){'key': '10.1016/S0959-440X(99)80027-X_bib2', 'first-page': '4982', 'article-title': 'The sequences of small proteins are not extensively optimized for rapid folding by natural selection', 'volume': '95', 'author': 'Kim', 'year': '1998'}
/ The sequences of small proteins are not extensively optimized for rapid folding by natural selection by Kim (1998)10.1038/nsb0398-229
/ Nat Struct Biol / Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins by Perl (1998)10.1021/bi971786p
/ Biochemistry / Folding dynamics of the src SH3 domain by Grantcharova (1997)10.1021/bi972075u
/ Biochemistry / The folding kinetics and thermodynamics of the Fyn-SH3 domain by Plaxco (1998)10.1021/bi00174a022
/ Biochemistry / Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a 2-state folding transition by Viguera (1994)10.1038/1412
/ Nat Struct Biol / Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain by Grantcharova (1998)10.1038/1418
/ Nat Struct Biol / Obligatory steps in protein folding and the conformational diversity of the transition state by Martinez (1998){'key': '10.1016/S0959-440X(99)80027-X_bib9', 'first-page': '559', 'article-title': 'Respective roles of short-and long-range interactions in protein folding', 'volume': '75', 'author': 'Go', 'year': '1978'}
/ Respective roles of short-and long-range interactions in protein folding by Go (1978)10.1006/jmbi.1996.0375
/ J Mol Biol / Local interactions dominate folding in a simple protein model by Unger (1996)10.1006/jmbi.1995.0511
/ J Mol Biol / Impact of local and non-local interactions on thermodynamics and kinetics of protein folding by Abkevich (1995)10.1002/(SICI)1097-0134(199711)29:3<282::AID-PROT3>3.0.CO;2-D
/ Proteins / Local interactions and the • optimization of protein folding by Doyle (1997)10.1006/jmbi.1998.1645
/ J Mol Biol / Contact order, transition state placement and the refolding rates of single domain proteins by Plaxco (1998){'key': '10.1016/S0959-440X(99)80027-X_bib14', 'first-page': '9801', 'article-title': 'Simple model of protein folding kinetics', 'volume': '92', 'author': 'Zwanzig', 'year': '1995'}
/ Simple model of protein folding kinetics by Zwanzig (1995)10.1111/j.1399-3011.1975.tb02465.x
/ Int J Pept Protein Res / Studies on protein folding, unfolding fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions by Taketomi (1975)10.1021/ma00145a039
/ Macromolecules / Estimation of effective inter-residue contact energies from protein crystal structures: quasi-chemical approximation by Miyazawa (1985)10.1002/(SICI)1097-0134(19980101)30:1<2::AID-PROT2>3.0.CO;2-R
/ Proteins / Protein folding in the landscape perspective: Chevron plots and non-Arrhenius kinetics by Chan (1998){'key': '10.1016/S0959-440X(99)80027-X_bib18', 'first-page': '5921', 'article-title': 'Folding funnels and frustration in off-lattice minimalist protein landscapes', 'volume': '95', 'author': 'Nymeyer', 'year': '1998'}
/ Folding funnels and frustration in off-lattice minimalist protein landscapes by Nymeyer (1998)10.1002/prot.340210302
/ Proteins / Funnels, pathways, and the energy landscape of protein folding: a synthesis by Bryngelson (1995){'key': '10.1016/S0959-440X(99)80027-X_bib20', 'first-page': '10636', 'article-title': 'Protein folding kinetics exhibit an Arrhenius • temperature dependence when corrected for the temperature dependence of protein stability', 'volume': '94', 'author': 'Scalley', 'year': '1997'}
/ Protein folding kinetics exhibit an Arrhenius • temperature dependence when corrected for the temperature dependence of protein stability by Scalley (1997)10.1002/pro.5560071118
/ Protein Sci / Global analysis of the thermal and chemical denaturation of the N-terminal domain of the ribosomal protein L9 in H2O and D2O by Kuhlman (1998)10.1063/1.471317
/ J Chem Phys / Diffusive dynamics of the reaction coordinate for protein folding funnels by Socci (1996){'key': '10.1016/S0959-440X(99)80027-X_bib23', 'first-page': '5622', 'article-title': 'Diffusion control in an elementary protein folding reaction', 'volume': '94', 'author': 'Jacob', 'year': '1997'}
/ Diffusion control in an elementary protein folding reaction by Jacob (1997){'key': '10.1016/S0959-440X(99)80027-X_bib24', 'first-page': '13591', 'article-title': 'Limited internal friction in the rate-limiting step of a two-state protein folding reaction', 'volume': '95', 'author': 'Plaxco', 'year': '1998'}
/ Limited internal friction in the rate-limiting step of a two-state protein folding reaction by Plaxco (1998)10.1021/bi962090j
/ Biochemistry / Thermodynamic properties of an extremely rapid protein folding reaction by Schindler (1996)10.1103/PhysRevE.55.4562
/ Phys Rev E / Statics, metastable states, and barriers in protein folding: a replica variational approach by Takada (1997)10.1038/nsb0598-385
/ Nat Struct Biol / Evidence for barrier-limited protein folding kinetics on the microsecond time scale by Shastry (1998)10.1038/36626
/ Nature / Folding dynamics and mechanism of beta-hairpin formation by Munoz (1997)10.1021/bi952217p
/ Biochemistry / Fast events in protein folding: helix melting and formation in a small peptide by Williams (1996){'key': '10.1016/S0959-440X(99)80027-X_bib30', 'first-page': '3709', 'article-title': 'Fast events in protein folding: relaxation dynamics of secondary and tertiary structure in native apomyoglobin', 'volume': '94', 'author': 'Gilmanshin', 'year': '1997'}
/ Fast events in protein folding: relaxation dynamics of secondary and tertiary structure in native apomyoglobin by Gilmanshin (1997)10.1038/nsb0197-44
/ Nat Struct Biol / Folding of cytochrome c initiated by submillisecond mixing by Takahashi (1997)10.1021/bi00009a038
/ Biochemistry / Is burst hydrophobic collapse necessary for protein folding? by Gutin (1995)10.1063/1.477012
/ J Chem Phys / Linking rates of folding in lattice models of proteins with underlying thermodynamic characteristics by Klimov (1998)10.1063/1.458605
/ J Chem Phys / The effects of internal constraints on the configurations of chain molecules by Chan (1990){'key': '10.1016/S0959-440X(99)80027-X_bib35', 'series-title': 'Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding', 'author': 'Fersht', 'year': '1999'}
/ Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding by Fersht (1999)10.1016/S0959-440X(98)80012-2
/ Curr Opin Struct Biol / Pathways for protein folding: is a new view needed? by Pande (1998)10.1016/S1359-0278(98)00057-1
/ Fold Des / Fishing for folding nuclei in lattice models and proteins by Thirumalai (1998)10.1016/S1359-0278(98)00056-X
/ Fold Des / Folding nucleus: specific or multiple? Insights • from lattice models and experiments by Shakhnovich (1998)10.1021/bi00199a029
/ Biochemistry by Abkevich (1994)10.1006/jmbi.1998.1997
/ J Mol Biol / Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism by Klimov (1998)10.1063/1.475393
/ J Chem Phys / On the transition coordinate for protein folding by Du (1998){'key': '10.1016/S0959-440X(99)80027-X_bib42', 'first-page': '1273', 'article-title': 'Folding pathway of a lattice model for proteins', 'volume': '96', 'author': 'Pande', 'year': '1999'}
/ Folding pathway of a lattice model for proteins by Pande (1999)10.1016/S1359-0278(96)00060-0
/ Fold / Protein folding funnels: the nature of the transition state ensemble by Onuchic (1996){'key': '10.1016/S0959-440X(99)80027-X_bib44', 'first-page': '10426', 'article-title': 'Single versus parallel pathways of protein folding and fractional formation of structure in the transition state', 'volume': '91', 'author': 'Fersht', 'year': '1994'}
/ Single versus parallel pathways of protein folding and fractional formation of structure in the transition state by Fersht (1994){'key': '10.1016/S0959-440X(99)80027-X_bib45', 'first-page': '4976', 'article-title': 'How evolution makes proteins fold quickly', 'volume': '95', 'author': 'Mirny', 'year': '1998'}
/ How evolution makes proteins fold quickly by Mirny (1998)10.1126/science.278.5345.1928
/ Science / ‘New view’ of protein folding reconciled with the old through multiple unfolding simulations by Lazaridis (1997)10.1006/jmbi.1996.0172
/ J Mol Biol / Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations by Li (1996)10.1103/PhysRevLett.81.5237
/ Rev Lett / Variational theory for site resolved protein folding free energy surfaces Phys by Portman (1998)10.1021/bi980245c
/ Biochemistry / Protein folding dynamics: quantitative agreement of theory and experiment by Burton (1998)10.1002/pro.5560030413
/ Protein Sci / Protein folding dynamics: the diffusion-collision model and experimental data by Karplus (1994)10.1080/07391102.1984.10507515
/ J Biomol Struct Dyn / Diffusion-collision model for the folding kinetics of the lambda-repressor operator-binding domain by Bashford (1984)10.1038/nsb0694-399
/ Nat Struct Biol / Elucidating the folding problem of helical peptides using empirical parameters by Munoz (1994){'key': '10.1016/S0959-440X(99)80027-X_bib53', 'first-page': '5872', 'article-title': 'A statistical mechanical model for beta-hairpin kinetics', 'volume': '95', 'author': 'Munoz', 'year': '1998'}
/ A statistical mechanical model for beta-hairpin kinetics by Munoz (1998)10.1063/1.475393
/ J Chem Phys / On the transition coordinate for protein folding by Du (1998)10.1006/jmbi.1995.0616
/ J Mol Biol / The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding by Itzhaki (1995)10.1016/0022-2836(92)90563-Y
/ J Mol Biol / The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure by Serrano (1992)10.1006/jmbi.1997.1304
/ J Mol Biol / Glutamine, alanine or glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates by Ladurner (1997)10.1038/nsb1197-939
/ Nat Struct Biol / Loop length, intramolecular diffusion and protein folding by Viguera (1997)10.1063/1.1747547
/ J Chem Phys / Intramolecular reaction in polycondensations. I. The theory of linear systems by Jacobson (1950)10.1016/S1359-0278(97)00007-2
/ Fold Des / An inverse correlation between loop length and stability in a four-helix-bundle protein by Nagi (1997)10.1006/jmbi.1997.0953
/ J Mol Biol / Characterization of long-range structure in the denatured state of staphylococcal nuclease. 2. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures by Gillespie (1997)10.1002/(SICI)1097-0134(1999)37:3+<171::AID-PROT21>3.0.CO;2-Z
/ Proteins / Ab initio protein structure prediction of CASP III targets using ROSETTA by Simons (1999)10.1006/jmbi.1998.1943
/ J Mol Biol / Prediction of local structure in proteins using a library of sequence-structure motifs by Bystroff (1998)10.1006/jmbi.1996.0042
/ J Mol Biol / Conformational analysis of peptides corresponding to beta-hairpins and a beta-sheet that represent the entire sequence of the alpha-spectrin SH3 domain by Viguera (1996)10.1006/jmbi.1998.2072
/ J Mol Biol / Prediction and structural characterization of an independently folding substructure in the src SH3 domain by Yi (1998){'key': '10.1016/S0959-440X(99)80027-X_bib66', 'first-page': '11158', 'article-title': 'Clustering of low-energy conformations near the native structures of small proteins', 'volume': '95', 'author': 'Shortle', 'year': '1998'}
/ Clustering of low-energy conformations near the native structures of small proteins by Shortle (1998)10.1021/bi00092a009
/ Biochemistry / Context dependence of protein secondary structure formation: the three-dimensional structure and stability of a hybrid between chymotrypsin inhibitor 2 and helix E from subtilisin Carlsberg by Osmark (1993)10.1038/385595a0
/ Nature / Three-dimensional structure of the tyrosine kinase c-Src by Xu (1997)10.1038/297162a0
/ Nature / Molecular structure of a new family of ribonucleases by Mauguen (1982)
Dates
Type | When |
---|---|
Created | 23 years, 1 month ago (July 25, 2002, 8:10 a.m.) |
Deposited | 6 years, 4 months ago (April 30, 2019, 7:55 p.m.) |
Indexed | 2 months, 1 week ago (June 27, 2025, 6:51 a.m.) |
Issued | 26 years, 5 months ago (April 1, 1999) |
Published | 26 years, 5 months ago (April 1, 1999) |
Published Print | 26 years, 5 months ago (April 1, 1999) |
@article{Alm_1999, title={Matching theory and experiment in protein folding}, volume={9}, ISSN={0959-440X}, url={http://dx.doi.org/10.1016/s0959-440x(99)80027-x}, DOI={10.1016/s0959-440x(99)80027-x}, number={2}, journal={Current Opinion in Structural Biology}, publisher={Elsevier BV}, author={Alm, Eric and Baker, David}, year={1999}, month=apr, pages={189–196} }