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Current Opinion in Structural Biology (78)
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Marcotte, E. M. (2000). Computational genetics: finding protein function by nonhomology methods. Current Opinion in Structural Biology, 10(3), 359–365.

Authors 1
  1. Edward M Marcotte (first)
References 48 Referenced 91
  1. 10.1073/pnas.96.16.9212 / Proc Natl Acad Sci USA / Distinctive gene expression patterns in human mammary epithelial cells and breast cancers by Perou (1999)
  2. 10.1126/science.286.5442.1153 / Science / A biochemical genomics approach for identifying genes by the activity of their products by Martzen (1999)
  3. 10.1126/science.285.5428.751 / Science / Detecting protein function and protein–protein interactions from genome sequences by Marcotte (1999)
  4. 10.1038/47056 / Nature / Protein interaction maps for complete genomes based on gene fusion events by Enright (1999)
  5. 10.1006/jmbi.1997.1288 / J Mol Biol / Intermediate sequences increase the detection of homology between sequences by Park (1997)
  6. 10.1016/S0092-8674(00)81522-6 / Cell / A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans by Shirasu (1999)
  7. 10.1016/S0968-0004(98)01274-2 / Trends Biochem Sci / Conservation of gene order: a fingerprint of proteins that physically interact by Dandekar (1998)
  8. 10.1007/PL00006122 / J Mol Evol / Conserved clusters of functionally related genes in two bacterial genomes by Tamames (1997)
  9. 10.1073/pnas.96.6.2896 / Proc Natl Acad Sci USA / The use of gene clusters to infer functional coupling by Overbeek (1999)
  10. 10.1016/S0022-2836(61)80072-7 / J Mol Biol / Genetic regulatory mechanisms in the synthesis of proteins by Jacob (1961)
  11. 10.1016/0378-1119(80)90075-X / Gene / Tn5 mutagenesis of the enterochelin gene cluster of Escherichia coli by Laird (1980)
  12. 10.1073/pnas.96.25.14418 / Proc Natl Acad Sci USA / Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes by Hallas (1999)
  13. 10.1016/S0092-8674(00)80789-8 / Cell / A striking organization of a large family of human neural cadherin-like cell adhesion genes by Wu (1999)
  14. 10.1073/pnas.96.8.4285 / Proc Natl Acad Sci USA / Assigning protein functions by comparative genome analysis: protein phylogenetic profiles by Pellegrini (1999)
  15. 10.1093/emboj/18.13.3793 / EMBO J / SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA) by Karzai (1999)
  16. 10.1016/S0014-5793(98)00276-2 / FEBS Lett / Differential genome analysis applied to the species-specific features of Helicobacter pylori by Huynen (1998)
  17. 10.1006/jmbi.1996.0167 / J Mol Biol / An evolutionary trace method defines binding surfaces common to protein families by Lichtarg (1996)
  18. 10.1093/nar/26.18.4291 / Nucleic Acids Res / A phylogenomic study of the MutS family of proteins by Eisen (1998)
  19. 10.1126/science.282.5396.2022 / Science / Comparison of the complete protein sets of worm and yeast: orthology and divergence by Chervitz (1998)
  20. 10.1126/science.278.5338.631 / Science / A genomic perspective on protein families by Tatusov (1997)
  21. 10.1101/gr.9.8.681 / Genome Res / Large-scale gene expression data analysis: a new challenge to computational biologists by Zhang (1999)
  22. 10.1038/4462 / Nat Genet / Exploring the new world of the genome with DNA microarrays by Brown (1999)
  23. 10.1073/pnas.94.24.13057 / Proc Natl Acad Sci USA / Yeast microarrays for genome wide parallel genetic and gene expression analysis by Lashkari (1997)
  24. 10.1126/science.270.5235.484 / Science / Serial analysis of gene expression by Velculescu (1995)
  25. 10.1126/science.2047873 / Science / Complementary DNA sequencing: expressed sequence tags and human genome project by Adams (1991)
  26. 10.1073/pnas.95.25.14863 / Proc Natl Acad Sci USA / Cluster analysis and display of genome-wide expression patterns by Eisen (1998)
  27. 10.1038/47048 / Nature / A combined algorithm for genome-wide prediction of protein function by Marcotte (1999)
  28. {'key': '10.1016/S0959-440X(00)00097-X_BIB28', 'series-title': 'Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology: 1999 August 6–10; Heidelberg, Germany', 'first-page': '282', 'article-title': 'Pharmaceutical target discovery using Guilt-by-Association: schizophrenia and Parkinson’s disease genes', 'author': 'Walker', 'year': '1999'} / Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology: 1999 August 6–10; Heidelberg, Germany / Pharmaceutical target discovery using Guilt-by-Association: schizophrenia and Parkinson’s disease genes by Walker (1999)
  29. 10.1128/MCB.19.3.1720 / Mol Cell Biol / Correlation between protein and mRNA abundance in yeast by Gygi (1999)
  30. 10.1002/pro.5560070320 / Protein Sci / High throughput protein characterization by automated reverse-phase chromatography/electrospray tandem mass spectrometry by Ducret (1998)
  31. 10.1002/elps.11501501210 / Electrophoresis / Protein identification for a Saccharomyces cerevisiae protein database by Garrels (1994)
  32. 10.1038/1700 / Nat Genet / Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex by Neubauer (1998)
  33. 10.1038/13690 / Nat Biotech / Quantitative analysis of complex protein mixtures using isotope-coded affinity tags by Gygi (1999)
  34. 10.1016/S0925-4773(98)00115-4 / Mech Dev / Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning by Gawantka (1998)
  35. 10.1093/nar/28.1.289 / Nucleic Acids Res / DIP: the Database of Interacting Proteins by Xenarios (2000)
  36. {'key': '10.1016/S0959-440X(00)00097-X_BIB36', 'series-title': 'Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology: 1999 August 6–10; Heidelberg, Germany', 'first-page': '60', 'article-title': 'Automatic extraction of biological information from scientific text: protein–protein interactions', 'author': 'Blaschke', 'year': '1999'} / Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology: 1999 August 6–10; Heidelberg, Germany / Automatic extraction of biological information from scientific text: protein–protein interactions by Blaschke (1999)
  37. Stapley, B.J., Benoit, G.: Bibliometrics: information retrieval and visualization from co-occurrence of gene names in Medline abstracts. In Proceedings of the Pacific Symposium on Biocomputing: 2000 January 4–9; Oahu, Hawaii. World Scientific Press; 2000:526-537. [URL: http://www-smi.stanford.edu/projects/helix/psb-online/] (10.1142/9789814447331_0050)
  38. 10.1093/nar/28.1.27 / Nucleic Acids Res / KEGG: Kyoto Encyclopedia of Genes and Genomes by Kanehisa (2000)
  39. 10.1093/nar/28.1.56 / Nucleic Acids Res / The EcoCyc and MetaCyc databases by Karp (2000)
  40. 10.1093/nar/28.1.37 / Nucleic Acids Res / MIPS: a database for genomes and protein sequences by Mewes (2000)
  41. 10.1093/nar/28.1.73 / Nucleic Acids Res / The Yeast Proteome Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information by Costanzo (2000)
  42. 10.1093/nar/28.1.45 / Nucleic Acids Res / The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 by Bairoch (2000)
  43. 10.1038/46558 / Nature / Large-scale analysis of the yeast genome by transposon tagging and gene disruption by Ross-Macdonald (1999)
  44. 10.1093/nar/25.17.3389 / Nucleic Acids Res / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
  45. 10.1016/0022-2836(81)90087-5 / J Mol Biol / Identification of common molecular subsequences by Smith (1981)
  46. 10.1126/science.1853201 / Science / A method to identify protein sequences that fold into a known three-dimensional structure by Bowie (1991)
  47. 10.1006/jmbi.1998.2061 / J Mol Biol / Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity by Fetrow (1998)
  48. 10.1110/ps.8.3.614 / Protein Sci / Functional insights from structural predictions: analysis of the Escherichia coli genome by Rychlewski (1999)
Dates
Type When
Created 23 years, 1 month ago (July 25, 2002, 10:46 p.m.)
Deposited 2 years, 4 months ago (April 17, 2023, 7:55 a.m.)
Indexed 3 months, 1 week ago (May 22, 2025, 5:29 a.m.)
Issued 25 years, 2 months ago (June 1, 2000)
Published 25 years, 2 months ago (June 1, 2000)
Published Print 25 years, 2 months ago (June 1, 2000)
Funders 0

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@article{Marcotte_2000, title={Computational genetics: finding protein function by nonhomology methods}, volume={10}, ISSN={0959-440X}, url={http://dx.doi.org/10.1016/s0959-440x(00)00097-x}, DOI={10.1016/s0959-440x(00)00097-x}, number={3}, journal={Current Opinion in Structural Biology}, publisher={Elsevier BV}, author={Marcotte, Edward M}, year={2000}, month=jun, pages={359–365} }