DOI: 10.1016/s0378-1119(03)00626-7. DExD/H-box proteins and their partners: helping RNA helicases unwind

DExD/H-box proteins and their partners: helping RNA helicases unwind

10.1016/s0378-1119(03)00626-7

Crossref journal-article

Elsevier BV

Gene (78)

Bibliography

Silverman, E., Edwalds-Gilbert, G., & Lin, R.-J. (2003). DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene, 312, 1â16.

Authors 3

Edward Silverman (first)
Gretchen Edwalds-Gilbert (additional)
Ren-Jang Lin (additional)

References 150 Referenced 169

10.1128/MCB.18.11.6756 / Mol. Cell. Biol. / The human U5-220kD protein (hPrp8) forms a stable RNA-free complex with several U5-specific proteins, including an RNA unwindase, a homologue of ribosomal elongation factor EF-2, and a novel WD-40 protein by Achsel (1998)
10.1074/jbc.M101171200 / J. Biol. Chem. / A-kinase-anchoring protein AKAP95 is targeted to the nuclear matrix and associates with p68 RNA helicase by Akileswaran (2001)
10.1016/0092-8674(87)90488-0 / Cell / A protein required for splicing group I introns in Neurospora mitochondria is mitochondrial tyrosyl-tRNA synthetase or a derivative thereof by Akins (1987)
10.1002/j.1460-2075.1995.tb00071.x / EMBO J. / SLU7 and a novel activity, SSF1, act during the PRP16-dependent step of yeast pre-mRNA splicing by Ansari (1995)
10.1016/S0968-0004(99)01437-1 / Trends Biochem. Sci. / patch: a new conserved domain in eukaryotic RNA-processing proteins and type D retroviral polyproteins by Aravind (1999)
10.1017/S1355838202028595 / RNA / The MEP-1 zinc-finger protein acts with MOG DEAH box proteins to control gene expression via the fem-3 3′ untranslated region in Caenorhabditis elegans by Belfiore (2002)
10.1038/35053110 / Nature / Role for a bidentate ribonuclease in the initiation step of RNA interference by Bernstein (2001)
10.1021/bi992322p / Biochemistry / Wheat germ translation initiation factor eIF4B affects eIF4A and eIFiso4F helicase activity by increasing the ATP binding affinity of eIF4A by Bi (2000)
10.1073/pnas.261562698 / Proc. Natl. Acad. Sci. USA / Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines by Billy (2001)
10.1091/mbc.12.10.3046 / Mol. Cell. Biol. / Association of human DEAD box protein DDX1 with a cleavage stimulation factor involved in 3′-end processing of pre-MRNA by Bleoo (2001)
10.1128/MCB.21.21.7366-7379.2001 / Mol. Cell. Biol. / Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processing by Bond (2001)
10.1017/S1355838200991787 / RNA / The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo by Brown (2000)
10.1042/bst0300150 / Biochem. Soc. Trans. / The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes by Carpousis (2002)
10.1016/S0959-440X(02)00298-1 / Curr. Opin. Struct. Biol. / Helicase structure and mechanism by Caruthers (2002)
10.1083/jcb.147.6.1181 / J. Cell. Biol. / Gemin3: a novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems by Charroux (1999)
10.1083/jcb.148.6.1177 / J. Cell. Biol. / novel component of the SMN complex that is found in both gems and nucleoli by Charroux (2000)
10.1074/jbc.M206981200 / J. Biol. Chem. / An RNA helicase DDX1, interacting with poly(A) RNA and heterogeneous nuclear ribonucleoprotein K by Chen (2002)
10.1016/S1097-2765(01)00170-8 / Mol. Cell / Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor by Chen (2001)
10.1126/science.275.5305.1468 / Science / Requirement of the DEAD-Box protein ded1p for messenger RNA translation by Chuang (1997)
10.1101/gad.13.19.2594 / Genes Dev. / Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase by Coburn (1999)
10.1017/S135583820101994X / RNA / The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes by Coller (2001)
10.1101/gad.13.15.1970 / Genes Dev. / Allele-specific genetic interactions between Prp8 and RNA active site residues suggest a function for Prp8 at the catalytic core of the spliceosome by Collins (1999)
10.1002/j.1460-2075.1993.tb06078.x / EMBO J. / A new yeast translation initiation factor suppresses a mutation in the eIF-4A RNA helicase by Coppolecchia (1993)
10.1017/S1355838201010640 / RNA / Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal- subunit biogenesis, functionally interacts with Dbp6p by Daugeron (2001)
10.1073/pnas.94.10.5201 / Proc. Natl. Acad. Sci. USA / The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae by de la Cruz (1997)
10.1093/emboj/17.4.1128 / EMBO J. / Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae by de la Cruz (1998)
10.1007/BF00315775 / Curr. Genet. / The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis by Dmochowska (1995)
10.1038/nature00947 / Nature / The U1 snRNP protein U1C recognizes the 5′ splice site in the absence of base pairing by Du (2002)
10.1007/s004380050876 / Mol. Gen. Genet. / The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA by Dziembowski (1998)
10.1017/S1355838200992483 / RNA / Dominant negative mutants of the yeast splicing factor Prp2 map to a putative cleft region in the helicase domain of DExD/H-box proteins by Edwalds-Gilbert (2000)
10.1093/emboj/21.11.2788 / EMBO J. / The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1 by Fischer (2002)
10.1101/gad.11.14.1864 / Genes Dev. / U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction by Fleckner (1997)
10.1017/S1355838202021076 / RNA / The human La (SS-B) autoantigen interacts with DDX15/hPrp43, a putative DEAH-box RNA helicase by Fouraux (2002)
10.1038/415141a / Nature / Functional organization of the yeast proteome by systematic analysis of protein complexes by Gavin (2002)
10.1016/S0959-440X(05)80116-2 / Curr. Opin. Struct. Biol. / Helicases: amino acid sequence comparisons and structure-function relationships by Gorbalenya (1993)
10.1016/S1097-2765(02)00579-8 / Mol. Cell / 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors by Grandi (2002)
10.1126/science.1064023 / Science / Argonaute2, a link between genetic and biochemical analyses of RNAi by Hammond (2001)
10.1038/418244a / Nature / RNA interference by Hannon (2002)
10.1016/S1097-2765(01)00344-6 / Mol. Cell / Composition and functional characterization of yeast 66S ribosome assembly intermediates by Harnpicharnchai (2001)
10.1073/pnas.262483899 / Proc. Natl. Acad. Sci. USA / Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method by Hartmuth (2002)
10.1038/415180a / Nature / Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry by Ho (2002)
10.1093/emboj/18.20.5778 / EMBO J. / Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells by Hodge (1999)
10.1101/gad.1022002 / Genes Dev. / A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins by Ishizuka (2002)
10.1073/pnas.061034498 / Proc. Natl. Acad. Sci. USA / A comprehensive two-hybrid analysis to explore the yeast protein interactome by Ito (2001)
10.1093/emboj/17.5.1497 / EMBO J. / The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex by Jacobs (1998)
10.1017/S1355838202022033 / RNA / How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing by James (2002)
10.1038/349715a0 / Nature / A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase by Jamieson (1991)
10.1126/science.291.5501.121 / Science / Active disruption of an RNA-protein interaction by a DExH/D RNA helicase by Jankowsky (2001)
10.1093/emboj/cdf335 / EMBO J. / The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability by Jimeno (2002)
10.1016/S1046-2023(02)00240-2 / Methods / Capturing splicing complexes to study structure and mechanism by Jurica (2002)
10.1017/S135583829999012X / RNA / The first ATPase domain of the yeast 246-kDa protein is required for in vivo unwinding of the U4/U6 duplex by Kim (1999)
10.1016/S0092-8674(00)81351-3 / Cell / Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide by Kim (1996)
10.1128/MCB.16.12.6810 / Mol. Cell. Biol. / Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicing by Kim (1996)
10.1101/gad.851301 / Genes Dev. / Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase by Kistler (2001)
10.1128/MCB.19.12.7897 / Mol. Cell. Biol. / Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae by Kressler (1999)
10.1016/S1097-2765(00)80175-6 / Mol. Cell / Splicing factor Prp8 governs U4/U6 RNA unwinding during activation of the spliceosome by Kuhn (1999)
10.1073/pnas.102304299 / Proc. Natl. Acad. Sci. USA / Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation by Kuhn (2002)
10.1073/pnas.95.8.4188 / Proc. Natl. Acad. Sci. USA / The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro by Laggerbauer (1998)
{'key': '10.1016/S0378-1119(03)00626-7_BIB59', 'series-title': 'The RNA World', 'first-page': '451', 'article-title': 'Group I and Group II ribozymes as RNPs: clues to the past and guides to the future', 'author': 'Lambowitz', 'year': '1999'} / The RNA World / Group I and Group II ribozymes as RNPs: clues to the past and guides to the future by Lambowitz (1999)
10.1038/35057062 / Nature / Initial sequencing and analysis of the human genome by Lander (2001)
10.1093/genetics/117.4.619 / Genetics / Evidence for related functions of the RNA genes of Saccharomyces cerevisiae by Last (1987)
10.1002/j.1460-2075.1996.tb00774.x / EMBO J. / The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases by Lauber (1996)
10.1128/MCB.22.23.8254-8266.2002 / Mol. Cell. Biol. / Interactions between mRNA export commitment, 3′-end quality control, and nuclear degradation by Libri (2002)
10.1101/gad.852101 / Genes Dev. / Multiple roles for the yeast SUB2/yUAP56 gene in splicing by Libri (2001)
{'key': '10.1016/S0378-1119(03)00626-7_BIB65', 'first-page': '835', 'article-title': 'Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3′ splice site', 'volume': '2', 'author': 'Lin', 'year': '1996', 'journal-title': 'RNA'} / RNA / Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3′ splice site by Lin (1996)
10.1016/S0960-9822(01)00574-7 / Curr. Biol. / mRNA export: travelling with DEAD box proteins by Linder (2001)
{'key': '10.1016/S0378-1119(03)00626-7_BIB67', 'first-page': '13', 'article-title': 'DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double stranded RNA independent of the degradosome assembling region of RNaseE', 'volume': '13', 'author': 'Liou', 'year': '2002', 'journal-title': 'J. Biol. Chem.'} / J. Biol. Chem. / DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double stranded RNA independent of the degradosome assembling region of RNaseE by Liou (2002)
10.1074/jbc.M109016200 / J. Biol. Chem. / The Ded1 DEAD box helicase interacts with Chk1 and Cdc2 by Liu (2002)
10.1128/MCB.22.15.5443-5450.2002 / Mol. Cell. Biol. / p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5′ splice site duplex by Liu (2002)
10.1016/S0092-8674(02)00804-8 / Cell / RNA chaperones exist and DEAD box proteins get a life by Lorsch (2002)
10.1038/35098106 / Nature / Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly by Luo (2001)
10.1126/science.1077783 / Science / Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome by Makarov (2002)
10.1016/S0092-8674(00)80975-7 / Cell / The DExH box protein Suv3p is a component of a yeast mitochondrial 3′- to-5′ exoribonuclease that suppresses group I intron toxicity by Margossian (1996)
10.1128/MCB.14.4.2307 / Mol. Cell. Biol. / The translation initiation factor eIF-4B contains an RNA-binding region that is distinct and independent from its ribonucleoprotein consensus sequence by Methot (1994)
10.1128/MCB.16.10.5328 / Mol. Cell. Biol. / A region rich in aspartic acid, arginine, tyrosine, and glycine (DRYG) mediates eukaryotic initiation factor 4B (eIF4B) self-association and interaction with eIF3 by Methot (1996)
10.1017/S135583820101158X / RNA / A conserved role of a DEAD box helicase in mRNA masking by Minshall (2001)
10.1016/S0092-8674(02)00771-7 / Cell / A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing by Mohr (2002)
10.1101/gad.974702 / Genes Dev. / miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs by Mourelatos (2002)
10.1073/pnas.052596299 / Proc. Natl. Acad. Sci. USA / tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase by Myers (2002)
10.1242/dev.128.17.3233 / Development / Me31B silences translation of oocyte-localizing RNAs through the formation of cytoplasmic RNP complex during Drosophila oogenesis by Nakamura (2001)
10.1006/excr.2000.4886 / Exp. Cell. Res. / The nuclear DEAD box RNA helicase p68 interacts with the nucleolar protein fibrillarin and colocalizes specifically in nascent nucleoli during telophase by Nicol (2000)
10.1093/nar/23.15.2966 / Nucleic Acids Res. / Overexpression of DEAD box protein pMSS116 promotes ATP-dependent splicing of a yeast group II intron in vitro by Niemer (1995)
10.1093/emboj/cdf547 / EMBO J. / 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm by Nissan (2002)
10.1093/genetics/143.1.67 / Genetics / Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations by Noble (1996)
10.1016/S0092-8674(01)00547-5 / Cell / ATP requirements and small interfering RNA structure in the RNA interference pathway by Nykanen (2001)
10.1017/S1355838202025050 / RNA / Characterization of interactions among the Cef1p-Prp19p-associated splicing complex by Ohi (2002)
10.1093/emboj/21.5.1168 / EMBO J. / The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding by Pang (2002)
10.1002/j.1460-2075.1994.tb06370.x / EMBO J. / Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation by Pause (1994)
10.1002/j.1460-2075.1992.tb05330.x / EMBO J. / Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A by Pause (1992)
10.1083/jcb.152.1.75 / J. Cell. Biol. / A functional interaction between the survival motor neuron complex and RNA polymerase II by Pellizzoni (2001)
10.1101/gad.14.1.97 / Genes Dev. / ATP can be dispensable for prespliceosome formation in yeast by Perriman (2000)
10.1002/j.1460-2075.1994.tb06331.x / EMBO J. / A dominant negative mutation in the conserved RNA helicase motif ‘SAT’ causes splicing factor PRP2 to stall in spliceosomes by Plumpton (1994)
10.1074/jbc.273.30.18906 / J. Biol. Chem. / Product release is the major contributor to kcat for the hepatitis C virus helicase-catalyzed strand separation of short duplex DNA by Porter (1998)
10.1017/S1355838202020046 / RNA / Expression of the essential mRNA export factor Yra1p is autoregulated by a splicing-dependent mechanism by Preker (2002)
10.1093/emboj/cdf578 / EMBO J. / Ribonuclease activity and RNA binding of recombinant human Dicer by Provost (2002)
10.1128/MCB.19.3.2189 / Mol. Cell. Biol. / The Caenorhabditis elegans sex determination gene mog-1 encodes a member of the DEAH-Box protein family by Puoti (1999)
10.1073/pnas.97.7.3276 / Proc. Natl. Acad. Sci. USA / The hermaphrodite sperm/oocyte switch requires the Caenorhabditis elegans homologs of PRP2 and PRP22 by Puoti (2000)
10.1038/381169a0 / Nature / A DEAD-box RNA helicase in the Escherichia coli RNA degradosome by Py (1996)
10.1016/S0960-9822(07)00345-4 / Curr. Biol. / RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2 by Raghunathan (1998)
10.1101/gr.473902 / Genome Res. / Large-scale proteomic analysis of the human spliceosome by Rappsilber (2002)
10.1038/sj.onc.1203676 / Oncogene / Sam68, RNA helicase A and Tap cooperate in the post-transcriptional regulation of human immunodeficiency virus and type D retroviral mRNA by Reddy (2000)
10.1002/(SICI)1521-1878(200003)22:3<235::AID-BIES5>3.0.CO;2-2 / BioEssays / Degradation of mRNA in bacteria: emergence of ubiquitous features by Regnier (2000)
10.1074/jbc.M100157200 / J. Biol. Chem. / Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F by Rogers (2001)
{'key': '10.1016/S0378-1119(03)00626-7_BIB104', 'first-page': '375', 'article-title': 'The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing', 'volume': '1', 'author': 'Roy', 'year': '1995', 'journal-title': 'RNA'} / RNA / The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing by Roy (1995)
10.1128/MCB.10.3.1134 / Mol. Cell. Biol. / Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F by Rozen (1990)
10.1017/S1355838299982286 / RNA / Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly by Rutz (1999)
10.1093/emboj/18.15.4332 / EMBO J. / Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p by Schmitt (1999)
10.1074/jbc.M112473200 / J. Biol. Chem. / Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16 by Schneider (2002)
10.1101/gad.992502 / Genes Dev. / Why do miRNAs live in the miRNP? by Schwarz (2002)
10.1038/84091 / Nat. Struct. Biol. / A new twist on RNA helicases: DExH/D box proteins as RNPases by Schwer (2001)
10.1038/337084a0 / Nature / Mitochondrial splicing requires a protein from a novel helicase family by Seraphin (1989)
10.1002/(SICI)1097-0061(199902)15:3<219::AID-YEA349>3.0.CO;2-3 / Yeast / Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis by Shiratori (1999)
10.1101/gad.13.15.1983 / Genes Dev. / Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center by Siatecka (1999)
10.1093/emboj/17.9.2663 / EMBO J. / Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export by Snay-Hodge (1998)
10.1016/S0092-8674(00)80925-3 / Cell / Mechanical devices of the spliceosome: motors, clocks, springs, and things by Staley (1998)
10.1016/S1097-2765(00)80174-4 / Mol. Cell / An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p by Staley (1999)
{'key': '10.1016/S0378-1119(03)00626-7_BIB117', 'first-page': '1543', 'article-title': 'Biochemical and genetic analyses of the U5, U6, and U4/U6×U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae', 'volume': '7', 'author': 'Stevens', 'year': '2001', 'journal-title': 'RNA'} / RNA / Biochemical and genetic analyses of the U5, U6, and U4/U6×U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae by Stevens (2001)
10.1016/S1097-2765(02)00436-7 / Mol. Cell / Composition and functional characterization of the yeast spliceosomal penta-snRNP by Stevens (2002)
10.1093/emboj/18.20.5761 / EMBO J. / The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p by Strahm (1999)
10.1038/35098113 / Nature / Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p by Strasser (2001)
10.1038/nature746 / Nature / TREX is a conserved complex coupling transcription with messenger RNA export by Strasser (2002)
10.1101/gad.5.4.629 / Genes Dev. / A cold-sensitive mRNA splicing mutant is a member of the RNA helicase gene family by Strauss (1991)
10.1093/nar/22.15.3187 / Nucleic Acids Res. / PRP28, a ‘DEAD-box’ protein, is required for the first step of mRNA splicing in vitro by Strauss (1994)
10.1017/S135583820100108X / RNA / The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5′ secondary structure by Svitkin (2001)
10.1016/S0092-8674(02)00793-6 / Cell / The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans by Tabara (2002)
10.1093/nar/29.2.565 / Nucleic Acids Res. / Unwinding of nucleic acids by HCV NS3 helicase is sensitive to the structure of the duplex by Tackett (2001)
10.1074/jbc.M003933200 / J. Biol. Chem. / Specific interaction between RNA helicase A and Tap, two cellular proteins that bind to the constitutive transport element of type D retrovirus by Tang (2000)
10.1016/S1097-2765(03)00006-6 / Mol. Cell / Newly Identified Motif in DEAD Box Helicases May Regulate ATP Binding and Hydrolysis by Tanner (2003)
10.1016/S1097-2765(01)00329-X / Mol. Cell / DExD/H box RNA helicases: from generic motors to specific dissociation functions by Tanner (2001)
10.1017/S1355838298981511 / RNA / Two mutant forms of the S1/TPR-containing protein Rrp5p affect the 18S rRNA synthesis in Saccharomyces cerevisiae by Torchet (1998)
10.1093/emboj/17.9.2651 / EMBO J. / Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export by Tseng (1998)
10.1038/35001009 / Nature / A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae by Uetz (2000)
10.1016/S0092-8674(00)81520-2 / Cell / The exosome: a proteasome for RNA? by van Hoof (1999)
10.1093/genetics/157.4.1451 / Genetics / Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae by van Nues (2001)
10.1101/gad.12.17.2770 / Genes Dev. / Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome by Vanzo (1998)
10.1128/MCB.17.6.3398 / Mol. Cell. Biol. / Rok1p is a putative RNA helicase required for rRNA processing by Venema (1997)
10.1126/science.1058040 / Science / The sequence of the human genome by Venter (2001)
10.1016/S0092-8674(01)00531-1 / Cell / Nascent ribosomes by Warner (2001)
10.1017/S1355838298980955 / RNA / Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation by Wiederkehr (1998)
10.1093/emboj/cdf480 / EMBO J. / Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein by Will (2002)
10.1038/381709a0 / Nature / An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing by Xu (1996)
10.1074/jbc.M102809200 / J. Biol. Chem. / Mapping the functional domains of HAP95, a protein that binds RNA helicase A and activates the constitutive transport element of type D retroviruses by Yang (2001)
10.1016/S0969-2126(00)80025-8 / Structure Fold Des. / Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase by Yao (1999)
10.1038/nsb0901-746 / Nat. Struct. Biol. / RNA interference: listening to the sound of silence by Zamore (2001)
10.1128/MCB.22.23.8241-8253.2002 / Mol. Cell. Biol. / Stable mRNP Formation and Export Require Cotranscriptional Recruitment of the mRNA Export Factors Yra1p and Sub2p by Hpr1p by Zenklusen (2002)
10.1101/gad.13.5.581 / Genes Dev. / Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex by Zhang (1999)
10.1093/emboj/cdf582 / EMBO J. / Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP by Zhang (2002)
10.1101/gad.851701 / Genes Dev. / Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56 by Zhang (2001)
10.1093/emboj/21.5.1177 / EMBO J. / The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm by Zhao (2002)
10.1038/nature01031 / Nature / Comprehensive proteomic analysis of the human spliceosome by Zhou (2002)

Dates

Type	When
Created	22 years, 1 month ago (July 16, 2003, 10:54 a.m.)
Deposited	2 years, 4 months ago (April 26, 2023, 1:25 p.m.)
Indexed	2 months, 1 week ago (June 30, 2025, 5:23 a.m.)
Issued	22 years, 2 months ago (July 1, 2003)
Published	22 years, 2 months ago (July 1, 2003)
Published Print	22 years, 2 months ago (July 1, 2003)

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BibTeX

@article{Silverman_2003, title={DExD/H-box proteins and their partners: helping RNA helicases unwind}, volume={312}, ISSN={0378-1119}, url={http://dx.doi.org/10.1016/s0378-1119(03)00626-7}, DOI={10.1016/s0378-1119(03)00626-7}, journal={Gene}, publisher={Elsevier BV}, author={Silverman, Edward and Edwalds-Gilbert, Gretchen and Lin, Ren-Jang}, year={2003}, month=jul, pages={1–16} }

JSON

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      "author": "Akileswaran",
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      "volume": "14",
      "author": "Ansari",
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      "first-page": "342",
      "DOI": "10.1016/S0968-0004(99)01437-1",
      "article-title": "patch: a new conserved domain in eukaryotic RNA-processing proteins and type D retroviral polyproteins",
      "volume": "24",
      "author": "Aravind",
      "year": "1999",
      "journal-title": "Trends Biochem. Sci."
    },
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      "doi-asserted-by": "crossref",
      "first-page": "725",
      "DOI": "10.1017/S1355838202028595",
      "article-title": "The MEP-1 zinc-finger protein acts with MOG DEAH box proteins to control gene expression via the fem-3 3\u2032 untranslated region in Caenorhabditis elegans",
      "volume": "8",
      "author": "Belfiore",
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      "journal-title": "RNA"
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      "first-page": "363",
      "DOI": "10.1038/35053110",
      "article-title": "Role for a bidentate ribonuclease in the initiation step of RNA interference",
      "volume": "409",
      "author": "Bernstein",
      "year": "2001",
      "journal-title": "Nature"
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    {
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      "DOI": "10.1021/bi992322p",
      "article-title": "Wheat germ translation initiation factor eIF4B affects eIF4A and eIFiso4F helicase activity by increasing the ATP binding affinity of eIF4A",
      "volume": "39",
      "author": "Bi",
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      "volume": "98",
      "author": "Billy",
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      "journal-title": "Proc. Natl. Acad. Sci. USA"
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      "author": "Bleoo",
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      "volume": "277",
      "author": "Chen",
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      "volume": "275",
      "author": "Chuang",
      "year": "1997",
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      "volume": "13",
      "author": "Coburn",
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      "author": "Coller",
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      "author": "Collins",
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      "first-page": "4005",
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      "volume": "12",
      "author": "Coppolecchia",
      "year": "1993",
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB24",
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      "first-page": "1317",
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      "article-title": "Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal- subunit biogenesis, functionally interacts with Dbp6p",
      "volume": "7",
      "author": "Daugeron",
      "year": "2001",
      "journal-title": "RNA"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB25",
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      "first-page": "5201",
      "DOI": "10.1073/pnas.94.10.5201",
      "article-title": "The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae",
      "volume": "94",
      "author": "de la Cruz",
      "year": "1997",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB26",
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      "first-page": "1128",
      "DOI": "10.1093/emboj/17.4.1128",
      "article-title": "Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3\u2032 end formation of 5.8S rRNA in Saccharomyces cerevisiae",
      "volume": "17",
      "author": "de la Cruz",
      "year": "1998",
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB27",
      "doi-asserted-by": "crossref",
      "first-page": "108",
      "DOI": "10.1007/BF00315775",
      "article-title": "The novel nuclear gene DSS-1 of Saccharomyces cerevisiae is necessary for mitochondrial biogenesis",
      "volume": "28",
      "author": "Dmochowska",
      "year": "1995",
      "journal-title": "Curr. Genet."
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB28",
      "doi-asserted-by": "crossref",
      "first-page": "86",
      "DOI": "10.1038/nature00947",
      "article-title": "The U1 snRNP protein U1C recognizes the 5\u2032 splice site in the absence of base pairing",
      "volume": "419",
      "author": "Du",
      "year": "2002",
      "journal-title": "Nature"
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB29",
      "doi-asserted-by": "crossref",
      "first-page": "108",
      "DOI": "10.1007/s004380050876",
      "article-title": "The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA",
      "volume": "260",
      "author": "Dziembowski",
      "year": "1998",
      "journal-title": "Mol. Gen. Genet."
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB30",
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      "article-title": "Dominant negative mutants of the yeast splicing factor Prp2 map to a putative cleft region in the helicase domain of DExD/H-box proteins",
      "volume": "6",
      "author": "Edwalds-Gilbert",
      "year": "2000",
      "journal-title": "RNA"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB31",
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      "first-page": "2788",
      "DOI": "10.1093/emboj/21.11.2788",
      "article-title": "The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1",
      "volume": "21",
      "author": "Fischer",
      "year": "2002",
      "journal-title": "EMBO J."
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB32",
      "doi-asserted-by": "crossref",
      "first-page": "1864",
      "DOI": "10.1101/gad.11.14.1864",
      "article-title": "U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction",
      "volume": "11",
      "author": "Fleckner",
      "year": "1997",
      "journal-title": "Genes Dev."
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      "first-page": "1428",
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      "article-title": "The human La (SS-B) autoantigen interacts with DDX15/hPrp43, a putative DEAH-box RNA helicase",
      "volume": "8",
      "author": "Fouraux",
      "year": "2002",
      "journal-title": "RNA"
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB34",
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      "first-page": "141",
      "DOI": "10.1038/415141a",
      "article-title": "Functional organization of the yeast proteome by systematic analysis of protein complexes",
      "volume": "415",
      "author": "Gavin",
      "year": "2002",
      "journal-title": "Nature"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB35",
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      "first-page": "419",
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      "article-title": "Helicases: amino acid sequence comparisons and structure-function relationships",
      "volume": "3",
      "author": "Gorbalenya",
      "year": "1993",
      "journal-title": "Curr. Opin. Struct. Biol."
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      "volume": "10",
      "author": "Grandi",
      "year": "2002",
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      "first-page": "1146",
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      "article-title": "Argonaute2, a link between genetic and biochemical analyses of RNAi",
      "volume": "293",
      "author": "Hammond",
      "year": "2001",
      "journal-title": "Science"
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB38",
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      "first-page": "244",
      "DOI": "10.1038/418244a",
      "article-title": "RNA interference",
      "volume": "418",
      "author": "Hannon",
      "year": "2002",
      "journal-title": "Nature"
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB39",
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      "first-page": "505",
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      "article-title": "Composition and functional characterization of yeast 66S ribosome assembly intermediates",
      "volume": "8",
      "author": "Harnpicharnchai",
      "year": "2001",
      "journal-title": "Mol. Cell"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB40",
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      "first-page": "16719",
      "DOI": "10.1073/pnas.262483899",
      "article-title": "Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method",
      "volume": "99",
      "author": "Hartmuth",
      "year": "2002",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB41",
      "doi-asserted-by": "crossref",
      "first-page": "180",
      "DOI": "10.1038/415180a",
      "article-title": "Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry",
      "volume": "415",
      "author": "Ho",
      "year": "2002",
      "journal-title": "Nature"
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    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB42",
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      "first-page": "5778",
      "DOI": "10.1093/emboj/18.20.5778",
      "article-title": "Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells",
      "volume": "18",
      "author": "Hodge",
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      "first-page": "2497",
      "DOI": "10.1101/gad.1022002",
      "article-title": "A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins",
      "volume": "16",
      "author": "Ishizuka",
      "year": "2002",
      "journal-title": "Genes Dev."
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      "first-page": "4569",
      "DOI": "10.1073/pnas.061034498",
      "article-title": "A comprehensive two-hybrid analysis to explore the yeast protein interactome",
      "volume": "98",
      "author": "Ito",
      "year": "2001",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
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      "key": "10.1016/S0378-1119(03)00626-7_BIB45",
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      "first-page": "1497",
      "DOI": "10.1093/emboj/17.5.1497",
      "article-title": "The 3\u2032 to 5\u2032 degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3\u2032 to 5\u2032 exonucleases of the exosome complex",
      "volume": "17",
      "author": "Jacobs",
      "year": "1998",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB46",
      "doi-asserted-by": "crossref",
      "first-page": "1068",
      "DOI": "10.1017/S1355838202022033",
      "article-title": "How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing",
      "volume": "8",
      "author": "James",
      "year": "2002",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB47",
      "doi-asserted-by": "crossref",
      "first-page": "715",
      "DOI": "10.1038/349715a0",
      "article-title": "A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase",
      "volume": "349",
      "author": "Jamieson",
      "year": "1991",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB48",
      "doi-asserted-by": "crossref",
      "first-page": "121",
      "DOI": "10.1126/science.291.5501.121",
      "article-title": "Active disruption of an RNA-protein interaction by a DExH/D RNA helicase",
      "volume": "291",
      "author": "Jankowsky",
      "year": "2001",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB49",
      "doi-asserted-by": "crossref",
      "first-page": "3526",
      "DOI": "10.1093/emboj/cdf335",
      "article-title": "The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability",
      "volume": "21",
      "author": "Jimeno",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB50",
      "doi-asserted-by": "crossref",
      "first-page": "336",
      "DOI": "10.1016/S1046-2023(02)00240-2",
      "article-title": "Capturing splicing complexes to study structure and mechanism",
      "volume": "28",
      "author": "Jurica",
      "year": "2002",
      "journal-title": "Methods"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB51",
      "doi-asserted-by": "crossref",
      "first-page": "959",
      "DOI": "10.1017/S135583829999012X",
      "article-title": "The first ATPase domain of the yeast 246-kDa protein is required for in vivo unwinding of the U4/U6 duplex",
      "volume": "5",
      "author": "Kim",
      "year": "1999",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB52",
      "doi-asserted-by": "crossref",
      "first-page": "343",
      "DOI": "10.1016/S0092-8674(00)81351-3",
      "article-title": "Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide",
      "volume": "87",
      "author": "Kim",
      "year": "1996",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB53",
      "doi-asserted-by": "crossref",
      "first-page": "6810",
      "DOI": "10.1128/MCB.16.12.6810",
      "article-title": "Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicing",
      "volume": "16",
      "author": "Kim",
      "year": "1996",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB54",
      "doi-asserted-by": "crossref",
      "first-page": "42",
      "DOI": "10.1101/gad.851301",
      "article-title": "Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase",
      "volume": "15",
      "author": "Kistler",
      "year": "2001",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB55",
      "doi-asserted-by": "crossref",
      "first-page": "7897",
      "DOI": "10.1128/MCB.19.12.7897",
      "article-title": "Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae",
      "volume": "19",
      "author": "Kressler",
      "year": "1999",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB56",
      "doi-asserted-by": "crossref",
      "first-page": "65",
      "DOI": "10.1016/S1097-2765(00)80175-6",
      "article-title": "Splicing factor Prp8 governs U4/U6 RNA unwinding during activation of the spliceosome",
      "volume": "3",
      "author": "Kuhn",
      "year": "1999",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB57",
      "doi-asserted-by": "crossref",
      "first-page": "9145",
      "DOI": "10.1073/pnas.102304299",
      "article-title": "Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation",
      "volume": "99",
      "author": "Kuhn",
      "year": "2002",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB58",
      "doi-asserted-by": "crossref",
      "first-page": "4188",
      "DOI": "10.1073/pnas.95.8.4188",
      "article-title": "The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro",
      "volume": "95",
      "author": "Laggerbauer",
      "year": "1998",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB59",
      "series-title": "The RNA World",
      "first-page": "451",
      "article-title": "Group I and Group II ribozymes as RNPs: clues to the past and guides to the future",
      "author": "Lambowitz",
      "year": "1999"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB60",
      "doi-asserted-by": "crossref",
      "first-page": "860",
      "DOI": "10.1038/35057062",
      "article-title": "Initial sequencing and analysis of the human genome",
      "volume": "409",
      "author": "Lander",
      "year": "2001",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB61",
      "doi-asserted-by": "crossref",
      "first-page": "619",
      "DOI": "10.1093/genetics/117.4.619",
      "article-title": "Evidence for related functions of the RNA genes of Saccharomyces cerevisiae",
      "volume": "117",
      "author": "Last",
      "year": "1987",
      "journal-title": "Genetics"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB62",
      "doi-asserted-by": "crossref",
      "first-page": "4001",
      "DOI": "10.1002/j.1460-2075.1996.tb00774.x",
      "article-title": "The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases",
      "volume": "15",
      "author": "Lauber",
      "year": "1996",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB63",
      "doi-asserted-by": "crossref",
      "first-page": "8254",
      "DOI": "10.1128/MCB.22.23.8254-8266.2002",
      "article-title": "Interactions between mRNA export commitment, 3\u2032-end quality control, and nuclear degradation",
      "volume": "22",
      "author": "Libri",
      "year": "2002",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB64",
      "doi-asserted-by": "crossref",
      "first-page": "36",
      "DOI": "10.1101/gad.852101",
      "article-title": "Multiple roles for the yeast SUB2/yUAP56 gene in splicing",
      "volume": "15",
      "author": "Libri",
      "year": "2001",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB65",
      "first-page": "835",
      "article-title": "Identification and characterization of yeast mutants that overcome an experimentally introduced block to splicing at the 3\u2032 splice site",
      "volume": "2",
      "author": "Lin",
      "year": "1996",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB66",
      "doi-asserted-by": "crossref",
      "first-page": "R961",
      "DOI": "10.1016/S0960-9822(01)00574-7",
      "article-title": "mRNA export: travelling with DEAD box proteins",
      "volume": "11",
      "author": "Linder",
      "year": "2001",
      "journal-title": "Curr. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB67",
      "first-page": "13",
      "article-title": "DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double stranded RNA independent of the degradosome assembling region of RNaseE",
      "volume": "13",
      "author": "Liou",
      "year": "2002",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB68",
      "doi-asserted-by": "crossref",
      "first-page": "2637",
      "DOI": "10.1074/jbc.M109016200",
      "article-title": "The Ded1 DEAD box helicase interacts with Chk1 and Cdc2",
      "volume": "277",
      "author": "Liu",
      "year": "2002",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB69",
      "doi-asserted-by": "crossref",
      "first-page": "5443",
      "DOI": "10.1128/MCB.22.15.5443-5450.2002",
      "article-title": "p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5\u2032 splice site duplex",
      "volume": "22",
      "author": "Liu",
      "year": "2002",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB70",
      "doi-asserted-by": "crossref",
      "first-page": "797",
      "DOI": "10.1016/S0092-8674(02)00804-8",
      "article-title": "RNA chaperones exist and DEAD box proteins get a life",
      "volume": "109",
      "author": "Lorsch",
      "year": "2002",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB71",
      "doi-asserted-by": "crossref",
      "first-page": "644",
      "DOI": "10.1038/35098106",
      "article-title": "Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly",
      "volume": "413",
      "author": "Luo",
      "year": "2001",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB72",
      "doi-asserted-by": "crossref",
      "first-page": "2205",
      "DOI": "10.1126/science.1077783",
      "article-title": "Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome",
      "volume": "298",
      "author": "Makarov",
      "year": "2002",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB73",
      "doi-asserted-by": "crossref",
      "first-page": "199",
      "DOI": "10.1016/S0092-8674(00)80975-7",
      "article-title": "The DExH box protein Suv3p is a component of a yeast mitochondrial 3\u2032- to-5\u2032 exoribonuclease that suppresses group I intron toxicity",
      "volume": "84",
      "author": "Margossian",
      "year": "1996",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB74",
      "doi-asserted-by": "crossref",
      "first-page": "2307",
      "DOI": "10.1128/MCB.14.4.2307",
      "article-title": "The translation initiation factor eIF-4B contains an RNA-binding region that is distinct and independent from its ribonucleoprotein consensus sequence",
      "volume": "14",
      "author": "Methot",
      "year": "1994",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB75",
      "doi-asserted-by": "crossref",
      "first-page": "5328",
      "DOI": "10.1128/MCB.16.10.5328",
      "article-title": "A region rich in aspartic acid, arginine, tyrosine, and glycine (DRYG) mediates eukaryotic initiation factor 4B (eIF4B) self-association and interaction with eIF3",
      "volume": "16",
      "author": "Methot",
      "year": "1996",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB76",
      "doi-asserted-by": "crossref",
      "first-page": "1728",
      "DOI": "10.1017/S135583820101158X",
      "article-title": "A conserved role of a DEAD box helicase in mRNA masking",
      "volume": "7",
      "author": "Minshall",
      "year": "2001",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB77",
      "doi-asserted-by": "crossref",
      "first-page": "769",
      "DOI": "10.1016/S0092-8674(02)00771-7",
      "article-title": "A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing",
      "volume": "109",
      "author": "Mohr",
      "year": "2002",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB78",
      "doi-asserted-by": "crossref",
      "first-page": "720",
      "DOI": "10.1101/gad.974702",
      "article-title": "miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs",
      "volume": "16",
      "author": "Mourelatos",
      "year": "2002",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB79",
      "doi-asserted-by": "crossref",
      "first-page": "2630",
      "DOI": "10.1073/pnas.052596299",
      "article-title": "tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase",
      "volume": "99",
      "author": "Myers",
      "year": "2002",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB80",
      "doi-asserted-by": "crossref",
      "first-page": "3233",
      "DOI": "10.1242/dev.128.17.3233",
      "article-title": "Me31B silences translation of oocyte-localizing RNAs through the formation of cytoplasmic RNP complex during Drosophila oogenesis",
      "volume": "128",
      "author": "Nakamura",
      "year": "2001",
      "journal-title": "Development"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB81",
      "doi-asserted-by": "crossref",
      "first-page": "272",
      "DOI": "10.1006/excr.2000.4886",
      "article-title": "The nuclear DEAD box RNA helicase p68 interacts with the nucleolar protein fibrillarin and colocalizes specifically in nascent nucleoli during telophase",
      "volume": "257",
      "author": "Nicol",
      "year": "2000",
      "journal-title": "Exp. Cell. Res."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB82",
      "doi-asserted-by": "crossref",
      "first-page": "2966",
      "DOI": "10.1093/nar/23.15.2966",
      "article-title": "Overexpression of DEAD box protein pMSS116 promotes ATP-dependent splicing of a yeast group II intron in vitro",
      "volume": "23",
      "author": "Niemer",
      "year": "1995",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB83",
      "doi-asserted-by": "crossref",
      "first-page": "5539",
      "DOI": "10.1093/emboj/cdf547",
      "article-title": "60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm",
      "volume": "21",
      "author": "Nissan",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB84",
      "doi-asserted-by": "crossref",
      "first-page": "67",
      "DOI": "10.1093/genetics/143.1.67",
      "article-title": "Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations",
      "volume": "143",
      "author": "Noble",
      "year": "1996",
      "journal-title": "Genetics"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB85",
      "doi-asserted-by": "crossref",
      "first-page": "309",
      "DOI": "10.1016/S0092-8674(01)00547-5",
      "article-title": "ATP requirements and small interfering RNA structure in the RNA interference pathway",
      "volume": "107",
      "author": "Nykanen",
      "year": "2001",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB86",
      "doi-asserted-by": "crossref",
      "first-page": "798",
      "DOI": "10.1017/S1355838202025050",
      "article-title": "Characterization of interactions among the Cef1p-Prp19p-associated splicing complex",
      "volume": "8",
      "author": "Ohi",
      "year": "2002",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB87",
      "doi-asserted-by": "crossref",
      "first-page": "1168",
      "DOI": "10.1093/emboj/21.5.1168",
      "article-title": "The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding",
      "volume": "21",
      "author": "Pang",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB88",
      "doi-asserted-by": "crossref",
      "first-page": "1205",
      "DOI": "10.1002/j.1460-2075.1994.tb06370.x",
      "article-title": "Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation",
      "volume": "13",
      "author": "Pause",
      "year": "1994",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB89",
      "doi-asserted-by": "crossref",
      "first-page": "2643",
      "DOI": "10.1002/j.1460-2075.1992.tb05330.x",
      "article-title": "Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A",
      "volume": "11",
      "author": "Pause",
      "year": "1992",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB90",
      "doi-asserted-by": "crossref",
      "first-page": "75",
      "DOI": "10.1083/jcb.152.1.75",
      "article-title": "A functional interaction between the survival motor neuron complex and RNA polymerase II",
      "volume": "152",
      "author": "Pellizzoni",
      "year": "2001",
      "journal-title": "J. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB91",
      "doi-asserted-by": "crossref",
      "first-page": "97",
      "DOI": "10.1101/gad.14.1.97",
      "article-title": "ATP can be dispensable for prespliceosome formation in yeast",
      "volume": "14",
      "author": "Perriman",
      "year": "2000",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB92",
      "doi-asserted-by": "crossref",
      "first-page": "879",
      "DOI": "10.1002/j.1460-2075.1994.tb06331.x",
      "article-title": "A dominant negative mutation in the conserved RNA helicase motif \u2018SAT\u2019 causes splicing factor PRP2 to stall in spliceosomes",
      "volume": "13",
      "author": "Plumpton",
      "year": "1994",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB93",
      "doi-asserted-by": "crossref",
      "first-page": "18906",
      "DOI": "10.1074/jbc.273.30.18906",
      "article-title": "Product release is the major contributor to kcat for the hepatitis C virus helicase-catalyzed strand separation of short duplex DNA",
      "volume": "273",
      "author": "Porter",
      "year": "1998",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB94",
      "doi-asserted-by": "crossref",
      "first-page": "969",
      "DOI": "10.1017/S1355838202020046",
      "article-title": "Expression of the essential mRNA export factor Yra1p is autoregulated by a splicing-dependent mechanism",
      "volume": "8",
      "author": "Preker",
      "year": "2002",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB95",
      "doi-asserted-by": "crossref",
      "first-page": "5864",
      "DOI": "10.1093/emboj/cdf578",
      "article-title": "Ribonuclease activity and RNA binding of recombinant human Dicer",
      "volume": "21",
      "author": "Provost",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB96",
      "doi-asserted-by": "crossref",
      "first-page": "2189",
      "DOI": "10.1128/MCB.19.3.2189",
      "article-title": "The Caenorhabditis elegans sex determination gene mog-1 encodes a member of the DEAH-Box protein family",
      "volume": "19",
      "author": "Puoti",
      "year": "1999",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB97",
      "doi-asserted-by": "crossref",
      "first-page": "3276",
      "DOI": "10.1073/pnas.97.7.3276",
      "article-title": "The hermaphrodite sperm/oocyte switch requires the Caenorhabditis elegans homologs of PRP2 and PRP22",
      "volume": "97",
      "author": "Puoti",
      "year": "2000",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB98",
      "doi-asserted-by": "crossref",
      "first-page": "169",
      "DOI": "10.1038/381169a0",
      "article-title": "A DEAD-box RNA helicase in the Escherichia coli RNA degradosome",
      "volume": "381",
      "author": "Py",
      "year": "1996",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB99",
      "doi-asserted-by": "crossref",
      "first-page": "847",
      "DOI": "10.1016/S0960-9822(07)00345-4",
      "article-title": "RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2",
      "volume": "8",
      "author": "Raghunathan",
      "year": "1998",
      "journal-title": "Curr. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB100",
      "doi-asserted-by": "crossref",
      "first-page": "1231",
      "DOI": "10.1101/gr.473902",
      "article-title": "Large-scale proteomic analysis of the human spliceosome",
      "volume": "12",
      "author": "Rappsilber",
      "year": "2002",
      "journal-title": "Genome Res."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB101",
      "doi-asserted-by": "crossref",
      "first-page": "3570",
      "DOI": "10.1038/sj.onc.1203676",
      "article-title": "Sam68, RNA helicase A and Tap cooperate in the post-transcriptional regulation of human immunodeficiency virus and type D retroviral mRNA",
      "volume": "19",
      "author": "Reddy",
      "year": "2000",
      "journal-title": "Oncogene"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB102",
      "doi-asserted-by": "crossref",
      "first-page": "235",
      "DOI": "10.1002/(SICI)1521-1878(200003)22:3<235::AID-BIES5>3.0.CO;2-2",
      "article-title": "Degradation of mRNA in bacteria: emergence of ubiquitous features",
      "volume": "22",
      "author": "Regnier",
      "year": "2000",
      "journal-title": "BioEssays"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB103",
      "doi-asserted-by": "crossref",
      "first-page": "30914",
      "DOI": "10.1074/jbc.M100157200",
      "article-title": "Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F",
      "volume": "276",
      "author": "Rogers",
      "year": "2001",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB104",
      "first-page": "375",
      "article-title": "The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing",
      "volume": "1",
      "author": "Roy",
      "year": "1995",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB105",
      "doi-asserted-by": "crossref",
      "first-page": "1134",
      "DOI": "10.1128/MCB.10.3.1134",
      "article-title": "Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F",
      "volume": "10",
      "author": "Rozen",
      "year": "1990",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB106",
      "doi-asserted-by": "crossref",
      "first-page": "819",
      "DOI": "10.1017/S1355838299982286",
      "article-title": "Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly",
      "volume": "5",
      "author": "Rutz",
      "year": "1999",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB107",
      "doi-asserted-by": "crossref",
      "first-page": "4332",
      "DOI": "10.1093/emboj/18.15.4332",
      "article-title": "Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p",
      "volume": "18",
      "author": "Schmitt",
      "year": "1999",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB108",
      "doi-asserted-by": "crossref",
      "first-page": "15452",
      "DOI": "10.1074/jbc.M112473200",
      "article-title": "Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16",
      "volume": "277",
      "author": "Schneider",
      "year": "2002",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB109",
      "doi-asserted-by": "crossref",
      "first-page": "1025",
      "DOI": "10.1101/gad.992502",
      "article-title": "Why do miRNAs live in the miRNP?",
      "volume": "16",
      "author": "Schwarz",
      "year": "2002",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB110",
      "doi-asserted-by": "crossref",
      "first-page": "113",
      "DOI": "10.1038/84091",
      "article-title": "A new twist on RNA helicases: DExH/D box proteins as RNPases",
      "volume": "8",
      "author": "Schwer",
      "year": "2001",
      "journal-title": "Nat. Struct. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB111",
      "doi-asserted-by": "crossref",
      "first-page": "84",
      "DOI": "10.1038/337084a0",
      "article-title": "Mitochondrial splicing requires a protein from a novel helicase family",
      "volume": "337",
      "author": "Seraphin",
      "year": "1989",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB112",
      "doi-asserted-by": "crossref",
      "first-page": "219",
      "DOI": "10.1002/(SICI)1097-0061(199902)15:3<219::AID-YEA349>3.0.CO;2-3",
      "article-title": "Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis",
      "volume": "15",
      "author": "Shiratori",
      "year": "1999",
      "journal-title": "Yeast"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB113",
      "doi-asserted-by": "crossref",
      "first-page": "1983",
      "DOI": "10.1101/gad.13.15.1983",
      "article-title": "Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center",
      "volume": "13",
      "author": "Siatecka",
      "year": "1999",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB114",
      "doi-asserted-by": "crossref",
      "first-page": "2663",
      "DOI": "10.1093/emboj/17.9.2663",
      "article-title": "Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export",
      "volume": "17",
      "author": "Snay-Hodge",
      "year": "1998",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB115",
      "doi-asserted-by": "crossref",
      "first-page": "315",
      "DOI": "10.1016/S0092-8674(00)80925-3",
      "article-title": "Mechanical devices of the spliceosome: motors, clocks, springs, and things",
      "volume": "92",
      "author": "Staley",
      "year": "1998",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB116",
      "doi-asserted-by": "crossref",
      "first-page": "55",
      "DOI": "10.1016/S1097-2765(00)80174-4",
      "article-title": "An RNA switch at the 5\u2032 splice site requires ATP and the DEAD box protein Prp28p",
      "volume": "3",
      "author": "Staley",
      "year": "1999",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB117",
      "first-page": "1543",
      "article-title": "Biochemical and genetic analyses of the U5, U6, and U4/U6\u00d7U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae",
      "volume": "7",
      "author": "Stevens",
      "year": "2001",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB118",
      "doi-asserted-by": "crossref",
      "first-page": "31",
      "DOI": "10.1016/S1097-2765(02)00436-7",
      "article-title": "Composition and functional characterization of the yeast spliceosomal penta-snRNP",
      "volume": "9",
      "author": "Stevens",
      "year": "2002",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB119",
      "doi-asserted-by": "crossref",
      "first-page": "5761",
      "DOI": "10.1093/emboj/18.20.5761",
      "article-title": "The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p",
      "volume": "18",
      "author": "Strahm",
      "year": "1999",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB120",
      "doi-asserted-by": "crossref",
      "first-page": "648",
      "DOI": "10.1038/35098113",
      "article-title": "Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p",
      "volume": "413",
      "author": "Strasser",
      "year": "2001",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB121",
      "doi-asserted-by": "crossref",
      "first-page": "304",
      "DOI": "10.1038/nature746",
      "article-title": "TREX is a conserved complex coupling transcription with messenger RNA export",
      "volume": "417",
      "author": "Strasser",
      "year": "2002",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB122",
      "doi-asserted-by": "crossref",
      "first-page": "629",
      "DOI": "10.1101/gad.5.4.629",
      "article-title": "A cold-sensitive mRNA splicing mutant is a member of the RNA helicase gene family",
      "volume": "5",
      "author": "Strauss",
      "year": "1991",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB123",
      "doi-asserted-by": "crossref",
      "first-page": "3187",
      "DOI": "10.1093/nar/22.15.3187",
      "article-title": "PRP28, a \u2018DEAD-box\u2019 protein, is required for the first step of mRNA splicing in vitro",
      "volume": "22",
      "author": "Strauss",
      "year": "1994",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB124",
      "doi-asserted-by": "crossref",
      "first-page": "382",
      "DOI": "10.1017/S135583820100108X",
      "article-title": "The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5\u2032 secondary structure",
      "volume": "7",
      "author": "Svitkin",
      "year": "2001",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB125",
      "doi-asserted-by": "crossref",
      "first-page": "861",
      "DOI": "10.1016/S0092-8674(02)00793-6",
      "article-title": "The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans",
      "volume": "109",
      "author": "Tabara",
      "year": "2002",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB126",
      "doi-asserted-by": "crossref",
      "first-page": "565",
      "DOI": "10.1093/nar/29.2.565",
      "article-title": "Unwinding of nucleic acids by HCV NS3 helicase is sensitive to the structure of the duplex",
      "volume": "29",
      "author": "Tackett",
      "year": "2001",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB127",
      "doi-asserted-by": "crossref",
      "first-page": "32694",
      "DOI": "10.1074/jbc.M003933200",
      "article-title": "Specific interaction between RNA helicase A and Tap, two cellular proteins that bind to the constitutive transport element of type D retrovirus",
      "volume": "275",
      "author": "Tang",
      "year": "2000",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB128",
      "doi-asserted-by": "crossref",
      "first-page": "127",
      "DOI": "10.1016/S1097-2765(03)00006-6",
      "article-title": "Newly Identified Motif in DEAD Box Helicases May Regulate ATP Binding and Hydrolysis",
      "volume": "11",
      "author": "Tanner",
      "year": "2003",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB129",
      "doi-asserted-by": "crossref",
      "first-page": "251",
      "DOI": "10.1016/S1097-2765(01)00329-X",
      "article-title": "DExD/H box RNA helicases: from generic motors to specific dissociation functions",
      "volume": "8",
      "author": "Tanner",
      "year": "2001",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB130",
      "doi-asserted-by": "crossref",
      "first-page": "1636",
      "DOI": "10.1017/S1355838298981511",
      "article-title": "Two mutant forms of the S1/TPR-containing protein Rrp5p affect the 18S rRNA synthesis in Saccharomyces cerevisiae",
      "volume": "4",
      "author": "Torchet",
      "year": "1998",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB131",
      "doi-asserted-by": "crossref",
      "first-page": "2651",
      "DOI": "10.1093/emboj/17.9.2651",
      "article-title": "Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export",
      "volume": "17",
      "author": "Tseng",
      "year": "1998",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB132",
      "doi-asserted-by": "crossref",
      "first-page": "623",
      "DOI": "10.1038/35001009",
      "article-title": "A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae",
      "volume": "403",
      "author": "Uetz",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB133",
      "doi-asserted-by": "crossref",
      "first-page": "347",
      "DOI": "10.1016/S0092-8674(00)81520-2",
      "article-title": "The exosome: a proteasome for RNA?",
      "volume": "99",
      "author": "van Hoof",
      "year": "1999",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB134",
      "doi-asserted-by": "crossref",
      "first-page": "1451",
      "DOI": "10.1093/genetics/157.4.1451",
      "article-title": "Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae",
      "volume": "157",
      "author": "van Nues",
      "year": "2001",
      "journal-title": "Genetics"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB135",
      "doi-asserted-by": "crossref",
      "first-page": "2770",
      "DOI": "10.1101/gad.12.17.2770",
      "article-title": "Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome",
      "volume": "12",
      "author": "Vanzo",
      "year": "1998",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB136",
      "doi-asserted-by": "crossref",
      "first-page": "3398",
      "DOI": "10.1128/MCB.17.6.3398",
      "article-title": "Rok1p is a putative RNA helicase required for rRNA processing",
      "volume": "17",
      "author": "Venema",
      "year": "1997",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB137",
      "doi-asserted-by": "crossref",
      "first-page": "1304",
      "DOI": "10.1126/science.1058040",
      "article-title": "The sequence of the human genome",
      "volume": "291",
      "author": "Venter",
      "year": "2001",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB138",
      "doi-asserted-by": "crossref",
      "first-page": "133",
      "DOI": "10.1016/S0092-8674(01)00531-1",
      "article-title": "Nascent ribosomes",
      "volume": "107",
      "author": "Warner",
      "year": "2001",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB139",
      "doi-asserted-by": "crossref",
      "first-page": "1357",
      "DOI": "10.1017/S1355838298980955",
      "article-title": "Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation",
      "volume": "4",
      "author": "Wiederkehr",
      "year": "1998",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB140",
      "doi-asserted-by": "crossref",
      "first-page": "4978",
      "DOI": "10.1093/emboj/cdf480",
      "article-title": "Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein",
      "volume": "21",
      "author": "Will",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB141",
      "doi-asserted-by": "crossref",
      "first-page": "709",
      "DOI": "10.1038/381709a0",
      "article-title": "An RNA-dependent ATPase associated with U2/U6 snRNAs in pre-mRNA splicing",
      "volume": "381",
      "author": "Xu",
      "year": "1996",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB142",
      "doi-asserted-by": "crossref",
      "first-page": "30694",
      "DOI": "10.1074/jbc.M102809200",
      "article-title": "Mapping the functional domains of HAP95, a protein that binds RNA helicase A and activates the constitutive transport element of type D retroviruses",
      "volume": "276",
      "author": "Yang",
      "year": "2001",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB143",
      "doi-asserted-by": "crossref",
      "first-page": "1353",
      "DOI": "10.1016/S0969-2126(00)80025-8",
      "article-title": "Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase",
      "volume": "7",
      "author": "Yao",
      "year": "1999",
      "journal-title": "Structure Fold Des."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB144",
      "doi-asserted-by": "crossref",
      "first-page": "746",
      "DOI": "10.1038/nsb0901-746",
      "article-title": "RNA interference: listening to the sound of silence",
      "volume": "8",
      "author": "Zamore",
      "year": "2001",
      "journal-title": "Nat. Struct. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB145",
      "doi-asserted-by": "crossref",
      "first-page": "8241",
      "DOI": "10.1128/MCB.22.23.8241-8253.2002",
      "article-title": "Stable mRNP Formation and Export Require Cotranscriptional Recruitment of the mRNA Export Factors Yra1p and Sub2p by Hpr1p",
      "volume": "22",
      "author": "Zenklusen",
      "year": "2002",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB146",
      "doi-asserted-by": "crossref",
      "first-page": "581",
      "DOI": "10.1101/gad.13.5.581",
      "article-title": "Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex",
      "volume": "13",
      "author": "Zhang",
      "year": "1999",
      "journal-title": "Genes Dev."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB147",
      "doi-asserted-by": "crossref",
      "first-page": "5875",
      "DOI": "10.1093/emboj/cdf582",
      "article-title": "Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP",
      "volume": "21",
      "author": "Zhang",
      "year": "2002",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/S0378-1119(03)00626-7_BIB148",
      "doi-asserted-by": "crossref",
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