Origin and evolution of transmembrane Chl-binding proteins: hydrophobic cluster analysis suggests a common one-helix ancestor for prokaryotic (Pcb) and eukaryotic (LHC) antenna protein superfamilies
10.1016/s0378-1097(03)00241-6
Crossref journal-article
Oxford University Press (OUP)
FEMS Microbiology Letters (286)
Bibliography

Garczarek, L., Poupon, A., & Partensky, F. (2003). Origin and evolution of transmembrane Chl-binding proteins: hydrophobic cluster analysis suggests a common one-helix ancestor for prokaryotic (Pcb) and eukaryotic (LHC) antenna protein superfamilies. FEMS Microbiology Letters, 222(1), 59–68.

Authors 3
  1. Laurence Garczarek (first)
  2. Anne Poupon (additional)
  3. Frédéric Partensky (additional)
References 44 Referenced 14
  1. 10.1146/annurev.arplant.47.1.685 / Annu. Rev. Plant Physiol. Plant Mol. Biol. / The chlorophyll-carotenoid proteins of oxygenic photosynthesis by Green (1996)
  2. 10.1038/367614a0 / Nature / Atomic model of plant light-harvesting complex by electron crystallography by Kühlbrandt (1994)
  3. 10.1515/znc-1986-1-235 / Z. Naturforsch. / The topology of the plastoquinone and herbicide binding peptides of photosystem II in the thylakoid membrane by Trebst (1986)
  4. 10.1038/9341 / Nat. Struct. Biol. / Revealing the structure of the oxygen-evolving core dimer of photosystem II by cryoelectron crystallography by Hankamer (1999)
  5. 10.1016/S0005-2728(00)00158-4 / Biochim. Biophys. Acta / Revealing the structure of the photosystem II chlorophyll binding proteins, CP43 and CP47 by Barber (2000)
  6. 10.1128/jb.170.11.5018-5026.1988 / J. Bacteriol. / Characterization of a cyanobacterial iron stress-induced gene similar to psbC by Laudenbach (1988)
  7. 10.1038/nsb1196-965 / Nat. Struct. Biol. / Photosystem I at 4 Å resolution represents the first structural model of a joint photosynthetic reaction centre and core antenna by Krauss (1996)
  8. 10.1006/jmbi.1997.1269 / J. Mol. Biol. / Photosystem I of Synechococcus elongatus at 4 angstrom resolution: comprehensive structure analysis by Schubert (1997)
  9. 10.1016/0014-5793(92)81463-V / FEBS Lett. / Characterization of a spinach psbS cDNA encoding the 22 kDa protein of photosystem II by Kim (1992)
  10. 10.1016/0014-5793(92)81462-U / FEBS Lett. / The single-copy gene psbS codes for a phylogenetically intriguing 22 kDa polypeptide of photosystem II by Wedel (1992)
  11. 10.1073/pnas.92.2.636 / Proc. Natl. Acad. Sci. USA / Cyanobacterial protein with similarity to the chlorophyll a/b binding proteins of higher plants: evolution and regulation by Miroshnichenko-Dolganov (1995)
  12. 10.1021/bi990545+ / Biochemistry / A cyanobacterial gene family coding for single-helix proteins resembling part of the light-harvesting proteins from higher plants by Funk (1999)
  13. 10.1007/BF02338835 / J. Mol. Evol. / Gene structure of a chlorophyll a/c-binding protein from a brown alga: Presence of an intron and phylogenetic implications by Caron (1996)
  14. 10.1007/BF00027318 / Plant Mol. Biol. / Transiently expressed early light-inducible thylakoid proteins share transmembrane domains with light-harvesting chlorophyll binding proteins by Grimm (1989)
  15. 10.1016/S1360-1385(99)01419-3 / Trends Plant Sci. / A guide to the Lhc genes and their relatives in Arabidopsis by Jansson (1999)
  16. 10.1007/PL00006445 / J. Mol. Evol. / A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastids evolution by Durnford (1999)
  17. 10.1073/pnas.93.26.15244 / Proc. Natl. Acad. Sci. USA / Independent evolution of the prochlorophyte and green plant chlorophyll a/b light-harvesting proteins by LaRoche (1996)
  18. 10.1023/A:1005930210515 / Plant Mol. Biol. / The 38 kDa chlorophyll a/b protein of the prokaryote Prochlorothrix hollandica is encoded by a divergent pcb gene by Staay (1998)
  19. 10.1007/s000180050082 / Curr. Stat. Per. Cell. Mol. Life Sci. / Deciphering protein sequence information through hydrophobic cluster analysis (HCA) by Callebaut (1997)
  20. 10.1016/0300-9084(90)90120-6 / Biochemistry / Hydrophobic cluster analysis: procedure to derive structural and functional information from 2-D-representation of protein sequences by Lemesle-Varloot (1990)
  21. 10.1016/S0022-2836(05)80360-2 / J. Mol. Biol. / Basic local alignment search tool by Altschul (1990)
  22. {'key': '10.1016/S0378-1097(03)00241-6-BIB22', 'first-page': '95', 'article-title': 'BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT', 'volume': '41', 'author': 'Hall', 'year': '1999', 'journal-title': 'Nucleic Acids Symp. Ser.'} / Nucleic Acids Symp. Ser. / BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT by Hall (1999)
  23. 10.1093/nar/25.17.3389 / Nucleic Acids Res. / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
  24. {'key': '10.1016/S0378-1097(03)00241-6-BIB24', 'first-page': '543', 'article-title': 'SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny', 'volume': '12', 'author': 'Galtier', 'year': '1996', 'journal-title': 'Comput. Appl. Biosci.'} / Comput. Appl. Biosci. / SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny by Galtier (1996)
  25. {'key': '10.1016/S0378-1097(03)00241-6-BIB25', 'first-page': '107', 'article-title': 'ScanProsite: a reference implementation of a PROSITE scanning tool', 'volume': '1', 'author': 'Gattiker', 'year': '2002', 'journal-title': 'Appl. Bioinform.'} / Appl. Bioinform. / ScanProsite: a reference implementation of a PROSITE scanning tool by Gattiker (2002)
  26. 10.1016/S0968-0004(99)01540-6 / Trends Biol. Sci. / NPS@: Network Protein Sequence Analysis by Combet (2000)
  27. 10.1016/S0014-5793(01)02766-1 / FEBS Lett. / Subunit positioning and transmembrane helix organisation in the core dimer of photosystem II by Hankamer (2001)
  28. 10.1016/S0959-440X(99)80066-9 / Curr. Opin. Struct. Biol. / Photosystem II by Barber (1999)
  29. 10.1007/BF00039173 / Photosynth. Res. / Origin and early evolution of photosynthesis by Blankenship (1992)
  30. 10.1038/24421 / Nature / Three-dimensional structure of photosystem II reaction centre at 8 Å resolution by Rhee (1998)
  31. 10.1016/0005-2728(85)90224-5 / Biochim. Biophys. Acta / Thermodynamic properties of the photochemical reaction center of Heliobacterium chlorum by Prince (1985)
  32. 10.1016/0014-5793(87)81062-1 / FEBS Lett. / The photosystem of the green sulfur bacterium Chlorobium limicola contains two early electron acceptors similar to photosystem I by Nitschke (1987)
  33. 10.1006/jmbi.1998.1824 / J. Mol. Biol. / A common ancestor for oxygenic and anoxygenic photosynthetic systems. A comparison based on the structural model of photosystem I by Schubert (1998)
  34. 10.1021/bi00452a003 / Biochemistry / Isolation of a photoactive photosynthetic reaction center-core antenna complex from Heliobacillus mobilis by Trost (1989)
  35. 10.1007/BF00028794 / Photosynth. Res. / Protein sequences and redox titrations indicate that the electron acceptors in reaction centers from Heliobacteria are similar to photosystem I by Trost (1992)
  36. 10.1007/BF00029382 / Photosynth. Res. / Hypothesis for the evolution of three-helix Chl a/b and Chl a/c light-harvesting antenna proteins from two-helix and four-helix ancestors by Green (1994)
  37. 10.1007/BF00019402 / Plant Mol. Biol. / Photosystem II characteristics of a constructed Synechocystis 6803 mutant lacking synthesis of the D1 polypeptide by Nilsson (1990)
  38. 10.1007/s004250050702 / Planta / Light-harvesting complex II pigments and proteins in association with Cbr, a homolog of higher-plant early light-inducible proteins in the unicellular green alga Dunaliella by Banet (2000)
  39. 10.1002/j.1460-2075.1992.tb05344.x / EMBO J. / A desiccation-related Elip-like gene from the resurrection plant Craterostigma plantagineum is regulated by light and ABA by Bartels (1992)
  40. 10.1515/znc-1991-9-1008 / Z. Naturforsch. / Sequence analysis of the D1 and D2 reaction center proteins of photosystem II by Svensson (1991)
  41. 10.1074/jbc.M008686200 / J. Biol. Chem. / The high light-inducible polypeptides in Synechocystis PCC6803 – Expression and function in high light by He (2001)
  42. 10.1016/S0378-1119(00)00413-3 / Gene / The family of light-harvesting-related proteins (LHCs, ELIPs, HLIPs): was the harvesting of light their primary function by Montané (2000)
  43. 10.1111/j.1574-6968.2002.tb11393.x / FEMS Microbiol. Lett. / Analysis of the hli gene family in marine and freshwater cyanobacteria by Bhaya (2002)
  44. 10.1016/0303-2647(94)90002-7 / Biosystems / Evolution of photosynthetic reaction centers and light harvesting chlorophyll proteins by Meyer (1994)
Dates
Type When
Created 22 years, 3 months ago (May 19, 2003, 1:32 p.m.)
Deposited 5 years, 5 months ago (March 19, 2020, 5:15 a.m.)
Indexed 11 months, 2 weeks ago (Sept. 16, 2024, 5:36 p.m.)
Issued 22 years, 4 months ago (May 1, 2003)
Published 22 years, 4 months ago (May 1, 2003)
Published Print 22 years, 4 months ago (May 1, 2003)
Funders 0

None

@article{Garczarek_2003, title={Origin and evolution of transmembrane Chl-binding proteins: hydrophobic cluster analysis suggests a common one-helix ancestor for prokaryotic (Pcb) and eukaryotic (LHC) antenna protein superfamilies}, volume={222}, ISSN={1574-6968}, url={http://dx.doi.org/10.1016/s0378-1097(03)00241-6}, DOI={10.1016/s0378-1097(03)00241-6}, number={1}, journal={FEMS Microbiology Letters}, publisher={Oxford University Press (OUP)}, author={Garczarek, Laurence and Poupon, Anne and Partensky, Frédéric}, year={2003}, month=may, pages={59–68} }