Chromatin rearrangements during nucleotide excision repair
10.1016/s0300-9084(99)80037-6
Crossref journal-article
Elsevier BV
Biochimie (78)
Bibliography

Moggs, J. G., & Almouzni, G. (1999). Chromatin rearrangements during nucleotide excision repair. Biochimie, 81(1–2), 45–52.

Authors 2
  1. Jonathan G. Moggs (first)
  2. Geneviève Almouzni (additional)
References 91 Referenced 23
  1. {'key': '10.1016/S0300-9084(99)80037-6_BIB1', 'article-title': 'DNA repair and mutagenesis', 'author': 'Friedberg', 'year': '1995'} / DNA repair and mutagenesis by Friedberg (1995)
  2. 10.1038/38444 / Nature / Crystal structure of the nucleosome core particle at 2.8 Angstrom resolution by Luger (1997)
  3. {'key': '10.1016/S0300-9084(99)80037-6_BIB3', 'article-title': 'Chromatin structure and function, 2nd edition', 'author': 'Wolffe', 'year': '1995'} / Chromatin structure and function, 2nd edition by Wolffe (1995)
  4. 10.1146/annurev.bi.65.070196.000355 / Annu. Rev. Biochem / DNA excision repair by Sancar (1996)
  5. 10.1146/annurev.bi.65.070196.001031 / Annu. Rev. Biochem / DNA repair in eukaryotes by Wood (1996)
  6. 10.1111/j.1751-1097.1997.tb08560.x / Photochem. Photobiol / Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment by Pfeifer (1997)
  7. 10.1073/pnas.84.19.6644 / Proc. Natl. Acad. Sci. USA / UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases by Gale (1987)
  8. 10.1016/0022-2836(88)90054-X / J. Mol. Biol / Photofootprint of nucleosome core DNA in intact chromatin having different structural states by Gale (1988)
  9. 10.1021/bi953011r / Biochemistry / Modulation of cyclobutane pyrimidine dimer formation in a positioned nucleosome containing poly(dA.dT) tracts by Schieferstein (1996)
  10. 10.1111/j.1751-1097.1990.tb01732.x / Photochem. Photobiol / UV induced (6-4) photoproducts are distributed differently than cyclobutane dimers in nucleosomes by Gale (1990)
  11. {'key': '10.1016/S0300-9084(99)80037-6_BIB11', 'first-page': '403', 'article-title': 'Experimental analysis of chromatin function in transcription control', 'volume': '4', 'author': 'Owen-Hughes', 'year': '1994', 'journal-title': 'Crit. Rev. Euk. Gene Exp'} / Crit. Rev. Euk. Gene Exp / Experimental analysis of chromatin function in transcription control by Owen-Hughes (1994)
  12. 10.1016/S0021-9258(17)32270-6 / J. Biol. Chem / Determination of minimum substrate size for human excinuclease by Huang (1994)
  13. 10.1016/S0021-9258(18)54596-8 / J. Biol. Chem / Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomes by Wang (1991)
  14. 10.1016/S0021-9258(18)52982-3 / J. Biol. Chem / Cell-free repair of UV-damaged SV40 chromosomes in human cell extracts by Sugasawa (1993)
  15. 10.1093/emboj/16.16.5046 / EMBO J / Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene by Wellinger (1997)
  16. 10.1093/carcin/5.10.1277 / Carcinogenesis / Visualisation of chromatin events associated with repair of ultraviolet light-induced damage by premature chromosome condensation by Hittleman (1984)
  17. 10.1093/carcin/7.12.1975 / Carcinogenesis / Visualisation of chromatin events during DNA excision repair in XP cells: deficiency in localised but not generalised chromatin events by Hittleman (1986)
  18. 10.1073/pnas.75.9.4238 / Proc. Natl. Acad. Sci. USA / Nucleosome rearrangement in human chromatin during UV-induced DNA repair synthesis by Smerdon (1978)
  19. 10.1021/bi00584a014 / Biochemistry / Distribution of repair-incorporated nucleotides and nucleosome rearrangement in the chromatin of normal and xeroderma pigmentosum human fibroblasts by Smerdon (1979)
  20. 10.1021/bi00554a025 / Biochemistry / Distribution within chromatin of deoxyribonucleic acid repair synthesis occurring at different times after ultraviolet radiation by Smerdon (1980)
  21. 10.1093/nar/9.1.203 / Nucleic Acids Res / Transient conformation changes in chromatin during excision repair of ultraviolet damage to DNA by Bodell (1981)
  22. 10.1016/S0021-9258(17)38447-8 / J. Biol. Chem / Periodic changes of chromatin organization associated with rearrangement of repair patches accompany DNA excision repair of mammalian cells by Mathis (1986)
  23. {'key': '10.1016/S0300-9084(99)80037-6_BIB23', 'series-title': 'DNA Repair Mechanisms and Their Biological Implications in Mammalian cells', 'first-page': '271', 'article-title': 'DNA excision repair at the nucleosome level of chromatin', 'author': 'Smerdon', 'year': '1989'} / DNA Repair Mechanisms and Their Biological Implications in Mammalian cells / DNA excision repair at the nucleosome level of chromatin by Smerdon (1989)
  24. 10.1016/0955-0674(91)90069-B / Curr. Opin. Cell Biol / DNA repair and the role of chromatin structure by Smerdon (1991)
  25. 10.1016/S0079-6603(08)60841-7 / Prog. Nucleic Acids Res. Mol. Biol / Nucleosome positioning: occurrence, mechanisms and functional consequences by Simpson (1991)
  26. 10.1016/0167-4781(92)90455-9 / Biochim. Biophys. Acta / Nucleosome positioning by Thoma (1992)
  27. 10.1126/science.276.5313.809 / Science / Nucleosome mobility and the maintenance of nucleosome positioning by Pazin (1997)
  28. 10.1016/0092-8674(87)90151-6 / Cell / Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene by Mellon (1987)
  29. 10.1146/annurev.bi.65.070196.000311 / Annu. Rev. Biochem / Relationships between DNA repair and transcription by Friedberg (1996)
  30. 10.1016/S0959-437X(96)90006-4 / Curr. Opin. Genet. Dev / TFIIH - a key component in multiple DNA transactions by Hoeijmakers (1996)
  31. 10.1016/0955-0674(95)80092-1 / Curr. Opin. Cell Biol / Interplay between chromatin structure and transcription by Kornberg (1995)
  32. 10.1016/S0092-8674(00)80073-2 / Cell / Chromatin unfolds by Felsenfeld (1996)
  33. 10.1074/jbc.272.45.28171 / J. Biol. Chem / Chromatin remodeling and the control of gene expression by Wu (1997)
  34. 10.1016/S0092-8674(00)80924-1 / Cell / Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines by Kadonaga (1998)
  35. 10.1006/scel.1995.0031 / Semin. Cell Biol / Histone acetylation in chromatin and chromosomes by Turner (1995)
  36. 10.1016/S0092-8674(00)81316-1 / Cell / Histone acetylation and chromatin assembly: a single escort, multiple dances? by Roth (1996)
  37. 10.1242/jcs.102.4.663 / J. Cell Sci / Poly ADP-ribosylation - a histone shuttle mechanism in DNA excision repair by Althaus (1992)
  38. 10.1016/S0092-8674(00)81918-2 / Cell / SWI2/SNF2 and related proteins; ATP-driven motors that disrupt protein-DNA interactions? by Pazin (1997)
  39. {'key': '10.1016/S0300-9084(99)80037-6_BIB39', 'first-page': '20', 'article-title': 'Chromatin remodeling machines: similar motors, ulterior motives', 'volume': '23', 'author': 'Cairns', 'year': '1998', 'journal-title': 'TIBS'} / TIBS / Chromatin remodeling machines: similar motors, ulterior motives by Cairns (1998)
  40. 10.1016/S0021-9258(18)33468-9 / J. Biol. Chem / Sodium butyrate stimulates DNA repair in UV-irradiated normal and xeroderma pigmentosum human fibroblasts by Smerdon (1982)
  41. 10.1111/j.1751-1097.1982.tb04397.x / Photochem. Photobiol / Increased levels of unscheduled DNA synthesis in UV-irradiated human fibroblasts pretreated with sodium butyrate by Williams (1982)
  42. 10.1093/carcin/7.7.1087 / Carcinogenesis / Changes in nuclear protein acetylation in UV-damaged human cells by Ramanathan (1989)
  43. 10.1038/38664 / Nature / Histone acetylation in chromatin structure and transcription by Grunstein (1997)
  44. 10.1074/jbc.273.28.17517 / J. Biol. Chem / Nucleosome unfolding during DNA repair in normal and xeroderma pigmentosum (Group C) human cells. by Baxter (1998)
  45. 10.1128/MCB.18.6.3182 / Mol. Cell. Biol / Relationship of the xeroderma pigmentosum group E DNA repair defect to the chromatin and DNA binding proteins UV-DDB and replication protein A by Rapic-Otrin (1998)
  46. 10.1128/MCB.18.7.4391 / Mol. Cell. Biol / p48 activates a UV-damaged-DNA binding factor and is defective in xeroderma pigmentosum group E cells that lack binding activity by Hwang (1998)
  47. 10.1016/S0960-9822(98)70040-5 / Curr. Biol / Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase by Verreault (1998)
  48. 10.1074/jbc.273.11.6292 / J. Biol. Chem / The DNA-dependent ATPase activity of yeast nucleotide excision repair factor 4 and its role in DNA damage recognition by Guzder (1998)
  49. {'key': '10.1016/S0300-9084(99)80037-6_BIB49', 'series-title': 'DNA repair mechanisms', 'first-page': '274', 'article-title': 'Preferential repair in Saccharomyces cerevisiae,', 'author': 'Brouwer', 'year': '1992'} / DNA repair mechanisms / Preferential repair in Saccharomyces cerevisiae, by Brouwer (1992)
  50. 10.1128/MCB.14.9.6135 / Mol. Cell. Biol / The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating-type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae, by Verhage (1994)
  51. 10.1128/MCB.16.2.496 / Mol. Cell. Biol / Double mutants of Saccharomyces cerevisiaewith alterations in global genome and transcription-coupled repair by Verhage (1996)
  52. 10.1093/nar/23.17.3457 / Nucleic Acids Res / Repair of plasmid and genomic DNA in a rad7-delta mutant of yeast by Mueller (1995)
  53. 10.1002/yea.320080506 / Yeast / Identification of RAD16a yeast excision repair gene homologous to the recombinational repair gene RAD54and to the SNF2gene involved in transcriptional activation by Schild (1992)
  54. 10.1101/gad.8.17.2035 / Genes Dev / Interaction of the yeast Rad7 and Sir3 proteins - implications for DNA repair and chromatin structure by Paetkau (1994)
  55. 10.1016/0092-8674(92)90390-X / Cell / ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes by Troelstra (1992)
  56. 10.1021/bi00347a041 / Biochemistry / A non-uniform distribution of excision repair synthesis in nucleosome DNA by Lan (1985)
  57. 10.1016/S0021-9258(19)84417-4 / J. Biol. Chem / Stability of nucleosome placement in newly repaired regions of DNA by Nissen (1986)
  58. 10.1016/S0092-8674(00)80164-6 / Cell / Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I by Gaillard (1996)
  59. 10.1093/emboj/16.20.6281 / EMBO J / Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair by Gaillard (1997)
  60. 10.1016/0092-8674(86)90287-4 / Cell / Chromatin assembly during SV40 DNA replication in vitro by Stillman (1986)
  61. 10.1016/0092-8674(89)90398-X / Cell / Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro by Smith (1989)
  62. 10.1101/gad.11.3.345 / Genes Dev / Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiaecells lacking chromatin assembly factor I by Kaufman (1997)
  63. 10.1083/jcb.143.3.563 / J. Cell. Biol / Recruitment of phosphorylated chromatin assembly factor 1 to chromatin following UV irradiation of human cells by Martini (1998)
  64. 10.1093/nar/24.3.433 / Nucleic Acids Res / Reversible protein phosphorylation modulates nucleotide excision repair of damaged DNA by human cell extracts by Ariza (1996)
  65. {'key': '10.1016/S0300-9084(99)80037-6_BIB65', 'article-title': 'Assays for chromatin remodelling during NER', 'author': 'Moggs', 'year': '1998', 'journal-title': 'Methods Enzymol'} / Methods Enzymol / Assays for chromatin remodelling during NER by Moggs (1998)
  66. 10.1021/bi00334a022 / Biochemistry / Multiple conformational states of repair patches in chromatin during DNA excision repair by Hunting (1985)
  67. 10.1016/S0021-9258(17)42461-6 / J. Biol. Chem / Completion of excision repair in human cells: relationship between ligation and nucleosome formation by Smerdon (1986)
  68. 10.1073/pnas.94.6.2215 / Proc. Natl. Acad. Sci. USA / DNA damage can alter the stability of nucleosomes: Effects are dependent on damage type by Mann (1997)
  69. 10.1111/j.1751-1097.1995.tb02345.x / Photochem. Photobiol / Preferential inhibition of nucleosome assembly by UV-induced (6-4) photoproducts by Matsumoto (1995)
  70. {'key': '10.1016/S0300-9084(99)80037-6_BIB70', 'first-page': '1613', 'article-title': 'Bleomycin-induced DNA damage and repair in human-cells permeabilized with lysophosphatidylcholine', 'volume': '50', 'author': 'Sidik', 'year': '1990', 'journal-title': 'Cancer Res'} / Cancer Res / Bleomycin-induced DNA damage and repair in human-cells permeabilized with lysophosphatidylcholine by Sidik (1990)
  71. 10.1093/carcin/13.1.135 / Carcinogenesis / Correlation between repair patch ligation and nucleosome rearrangement in human cells treated with bleomycin, UV radiation or methyl methanesulfonate by Sidik (1992)
  72. 10.1093/nar/20.13.3549-a / Nucleic Acids Res / Purification of PCNA as a nucleotide excision repair protein by Nichols (1992)
  73. 10.1016/0092-8674(92)90416-A / Cell / Proliferating cell nuclear antigen is required for DNA excision repair by Shivji (1992)
  74. 10.1128/MCB.14.9.6187 / Mol. Cell. Biol / Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevisoocytes - an alternative pathway of base excision DNA repair by Matsumoto (1994)
  75. 10.1074/jbc.271.16.9573 / J. Biol. Chem / Two pathways for base excision repair in mammalian cells by Frosina (1996)
  76. 10.1093/emboj/16.11.3341 / EMBO J / Second pathway for completion of human DNA base excision repair: reconstitution with purified proteins and requirement for DNase IV (FEN1) by Klungland (1997)
  77. 10.1006/excr.1995.1382 / Exp. Cell. Res / Detection of nucleotide excision repair incisions in human fibroblasts by immunostaining for PCNA by Aboussekhra (1995)
  78. 10.1016/0921-8777(96)00021-3 / Mutat. Res / Effect of XPA gene mutations on UV-induced immunostaining of PCNA in fibroblasts from xeroderma pigmentosum group-A patients by Miura (1996)
  79. 10.1002/j.1460-2075.1994.tb06399.x / EMBO J / Mutagen sensitivity and suppression of position-effect variegation result from mutations in mus209, the Drosophilagene encoding PCNA by Henderson (1994)
  80. 10.1242/dev.124.17.3385 / Development / The cramped gene of Drosophilais a member of the Polycomb-group, and interacts with mus209, the gene encoding proliferating cell nuclear antigen by Yamamoto (1997)
  81. 10.1101/gad.11.3.358 / Genes Dev / Rfl2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivo by Enomoto (1997)
  82. 10.1101/gad.12.2.219 / Genes Dev / Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci by Enomoto (1998)
  83. 10.1073/pnas.94.24.13081 / Proc. Natl. Acad. Sci. USA / The yeast Cac1 protein is required for the stable inheritance of transcriptionally repressed chromatin at telomeres by Monson (1997)
  84. 10.1093/emboj/16.8.2150 / EMBO J / Chromatin structure modulates DNA repair by photolyase in vivo by Suter (1997)
  85. 10.1038/42288 / Nature / Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae, by Tsukamoto (1997)
  86. 10.1074/jbc.273.10.5858 / J. Biol. Chem / DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139 by Rogakou (1998)
  87. 10.1101/gad.2.11.1476 / Genes Dev / The Rad6 protein of Saccharomyces cerevisiaepolyubiquitinates histones, and its acidic domain mediates this activity by Sung (1988)
  88. 10.1016/S0092-8674(00)80154-3 / Cell / Inactivation of the HR6B ubiquitin-conjugating DNA repair enzyme in mice causes male sterility associated with chromatin modification by Roest (1996)
  89. 10.1073/pnas.94.16.8732 / Proc. Natl. Acad. Sci. USA / MLL is fused to CBP, a histone acetyltransferase, in therapy-related acute myeloid leukemia with a t (11;16)(q23;13.3) by Sobulu (1997)
  90. 10.1038/35895 / Nature / Role of the histone deacetylase complex in acute promyelocytic leukemia by Lin (1998)
  91. 10.1038/28212 / Nature / Truncating mutations of hSNF5/INI1 in aggressive paediatric cancers by Versteege (1998)
Dates
Type When
Created 23 years, 1 month ago (July 25, 2002, 11:49 a.m.)
Deposited 4 years, 3 months ago (May 8, 2021, 12:13 a.m.)
Indexed 11 months, 3 weeks ago (Sept. 5, 2024, 3:07 a.m.)
Issued 26 years, 8 months ago (Jan. 1, 1999)
Published 26 years, 8 months ago (Jan. 1, 1999)
Published Print 26 years, 8 months ago (Jan. 1, 1999)
Funders 0

None

@article{Moggs_1999, title={Chromatin rearrangements during nucleotide excision repair}, volume={81}, ISSN={0300-9084}, url={http://dx.doi.org/10.1016/s0300-9084(99)80037-6}, DOI={10.1016/s0300-9084(99)80037-6}, number={1–2}, journal={Biochimie}, publisher={Elsevier BV}, author={Moggs, Jonathan G. and Almouzni, Geneviève}, year={1999}, month=jan, pages={45–52} }