DOI: 10.1016/s0167-7799(01)01636-5. Whole-cell simulation: a grand challenge of the 21st century

Whole-cell simulation: a grand challenge of the 21st century

10.1016/s0167-7799(01)01636-5

Crossref journal-article

Elsevier BV

Trends in Biotechnology (78)

Bibliography

Tomita, M. (2001). Whole-cell simulation: a grand challenge of the 21st century. Trends in Biotechnology, 19(6), 205â210.

Authors 1

Masaru Tomita (first)

References 20 Referenced 233

10.1093/nar/12.1Part1.1 / Nucl. Acids Res. / Knowledge-based simulation of genetic regulation in bacteriophage lambda by Meyers (1984)
Koile, K. and Overton, G.C. (1989) A qualitative model for gene expression. Proc. of the 1989 Summer Comp. Simu. Conf. 415–421
{'key': '10.1016/S0167-7799(01)01636-5_BIB3', 'series-title': 'Artificial Intelligence and Molecular Biology', 'first-page': '289', 'article-title': 'A qualitative biochemistry and its application to the regulation of the tryptophan operon', 'author': 'Karp', 'year': '1993'} / Artificial Intelligence and Molecular Biology / A qualitative biochemistry and its application to the regulation of the tryptophan operon by Karp (1993)
10.1073/pnas.94.3.814 / Proc. Natl. Acad. Sci. U. S. A. / Stochastic mechanisms in gene expression by McAdams (1997)
10.1002/(SICI)1521-1878(200001)22:1<84::AID-BIES13>3.0.CO;2-I / Bioessays / Modeling the molecular regulatory mechanism of circadian rhythms in Drosophila by Leloup (2000)
10.1006/jtbi.1995.0063 / J. Theor. Biol. / Quantitative analysis of a molecular model of mitotic control in fission yeast by Novak (1995)
10.1091/mbc.11.1.369 / Mol. Biol. Cell / Kinetic analysis of a molecular model of the budding yeast cell cycle by Chen (2000)
10.1006/jtbi.1997.0651 / J. Theor. Biol. / Predicting temporal fluctuations in an intracellular signalling pathway by Morton-Firth (1998)
{'key': '10.1016/S0167-7799(01)01636-5_BIB9', 'first-page': '89', 'article-title': 'MetaModel: a program for modeling and control analysis of metabolic pathways on the IBM PC and compatibles', 'volume': '7', 'author': 'Cornish-Bowden', 'year': '1991', 'journal-title': 'Comput. Appl. Biosci.'} / Comput. Appl. Biosci. / MetaModel: a program for modeling and control analysis of metabolic pathways on the IBM PC and compatibles by Cornish-Bowden (1991)
{'key': '10.1016/S0167-7799(01)01636-5_BIB10', 'first-page': '441', 'article-title': 'SCAMP: a general-purpose simulator and metabolic control analysis program', 'volume': '9', 'author': 'Sauro', 'year': '1993', 'journal-title': 'Comput. Appl. Biosci.'} / Comput. Appl. Biosci. / SCAMP: a general-purpose simulator and metabolic control analysis program by Sauro (1993)
{'key': '10.1016/S0167-7799(01)01636-5_BIB11', 'first-page': '563', 'article-title': 'GEPASI: a software package for modeling the dynamics, steady states and control of biochemical and other systems', 'volume': '9', 'author': 'Mendes', 'year': '1993', 'journal-title': 'Comput. Appl. Biosci.'} / Comput. Appl. Biosci. / GEPASI: a software package for modeling the dynamics, steady states and control of biochemical and other systems by Mendes (1993)
10.1016/S0968-0004(97)01103-1 / Trends Biochem. Sci. / Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3 by Mendes (1997)
10.1093/bioinformatics/15.1.72 / Bioinformatics / E-CELL: Software environment for whole cell simulation by Tomita (1999)
{'key': '10.1016/S0167-7799(01)01636-5_BIB14', 'first-page': '133', 'article-title': 'Computer model of human erythrocyte metabolism', 'volume': '319', 'author': 'Palsson', 'year': '1989', 'journal-title': 'Prog. Clin. Biol. Res.'} / Prog. Clin. Biol. Res. / Computer model of human erythrocyte metabolism by Palsson (1989)
10.1006/jtbi.1996.0072 / J. Theor. Biol. / Model assessment and refinement using strategies from biochemical systems theory: application to metabolism in human red blood cells by Ni (1996)
10.1016/0169-2607(92)90102-D / Comput. Meth. Prog. Biomed. / A Macintosh software package for simulation of human red blood cellmetabolism by Lee (1992)
10.1016/S0022-5193(89)80233-4 / J. Theor. Biol. / Metabolic dynamics in the human red cell by Joshi (1989)
10.1016/S0022-5193(05)80012-8 / J. Theor. Biol. / Metabolic dynamics in the human red cell by Joshi (1990)
10.1016/S0006-3495(97)78146-3 / Biophys. J. / A general computational framework for modeling cellular structure and function by Schaff (1997)
10.1093/bioinformatics/15.9.749 / Bioinformatics / Mathematical simulation and analysis of cellular metabolism and regulation by Goryanin (1999)

Dates

Type	When
Created	23 years, 1 month ago (July 25, 2002, 5:15 p.m.)
Deposited	3 years, 2 months ago (June 26, 2022, 4:53 a.m.)
Indexed	1 month, 1 week ago (July 23, 2025, 8:40 a.m.)
Issued	24 years, 3 months ago (June 1, 2001)
Published	24 years, 3 months ago (June 1, 2001)
Published Print	24 years, 3 months ago (June 1, 2001)

Funders 0

None

BibTeX

@article{Tomita_2001, title={Whole-cell simulation: a grand challenge of the 21st century}, volume={19}, ISSN={0167-7799}, url={http://dx.doi.org/10.1016/s0167-7799(01)01636-5}, DOI={10.1016/s0167-7799(01)01636-5}, number={6}, journal={Trends in Biotechnology}, publisher={Elsevier BV}, author={Tomita, Masaru}, year={2001}, month=jun, pages={205–210} }

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