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Kadonaga, J. T. (2004). Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors. Cell, 116(2), 247–257.

Authors 1
  1. James T Kadonaga (first)
References 135 Referenced 294
  1. 10.1016/0092-8674(93)90109-4 / Cell / Nucleosome displacement in transcription by Adams (1993)
  2. 10.1016/0092-8674(87)90611-8 / Cell / Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor by Angel (1987)
  3. 10.1126/science.3140380 / Science / Iκb by Baeuerle (1988)
  4. 10.1146/annurev.immunol.14.1.649 / Annu. Rev. Immunol. / The NF-κB and IκB proteins by Baldwin (1996)
  5. 10.1126/science.291.5503.447 / Science / Insulators and boundaries by Bell (2001)
  6. 10.1126/science.281.5373.60 / Science / Going the distance by Blackwood (1998)
  7. 10.1128/MCB.16.5.2044 / Mol. Cell. Biol. / Three functional classes of transcriptional activation domains by Blau (1996)
  8. 10.1073/pnas.82.1.43 / Proc. Natl. Acad. Sci. USA / Specific protein binding to far upstream activating sequences in polymerase II promoters by Bram (1985)
  9. 10.1016/0092-8674(85)90246-6 / Cell / A eukaryotic transcriptional activator bearing the DNA specificity of a prokaryotic repressor by Brent (1985)
  10. 10.1126/science.3529394 / Science / Purification and biochemical characterization of the promoter-specific transcription factor, Sp1 by Briggs (1986)
  11. 10.1126/science.165.3891.349 / Science / Gene regulation for higher cells by Britten (1969)
  12. 10.1073/pnas.142291299 / Proc. Natl. Acad. Sci. USA / Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex by Calhoun (2002)
  13. 10.1038/345361a0 / Nature / A mechanism for synergistic activation of a mammalian gene by GAL4 derivatives by Carey (1990)
  14. 10.1016/0092-8674(85)90174-6 / Cell / An RNA polymerase II transcription factor binds to an upstream element in the adenovirus major late promoter by Carthew (1985)
  15. 10.1016/0092-8674(83)90430-0 / Cell / DNA sequences bound specifically by glucocorticoid receptor in vitro render a heterologous promoter hormone responsive in vivo by Chandler (1983)
  16. 10.1016/0092-8674(88)90144-4 / Cell / Analysis of Sp1 in vivo reveals multiple transcriptional domains, including a novel glutamine-rich activation motif by Courey (1988)
  17. 10.1073/pnas.85.21.7937 / Proc. Natl. Acad. Sci. USA / Purified hepatocyte nuclear factor 1 interacts with a family of hepatocyte-specific promoters by Courtois (1988)
  18. 10.1016/0092-8674(88)90024-4 / Cell / Fos and Jun by Curran (1988)
  19. 10.1093/nar/11.5.1475 / Nucleic Acids Res. / Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei by Dignam (1983)
  20. 10.1016/0092-8674(83)90053-3 / Cell / Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II by Dynan (1983)
  21. 10.1016/0092-8674(83)90210-6 / Cell / The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter by Dynan (1983)
  22. 10.1016/S0092-8674(80)80048-1 / Cell / Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes by Engelke (1980)
  23. 10.1126/science.3283939 / Science / The steroid and thyroid hormone receptor superfamily by Evans (1988)
  24. 10.1038/355219a0 / Nature / Chromatin as an essential part of the transcriptional mechanism by Felsenfeld (1992)
  25. 10.1016/0092-8674(87)90100-0 / Cell / Purification and characterization of OTF-1, a transcription factor regulating cell cycle expression of a human histone H2b gene by Fletcher (1987)
  26. 10.1016/S0092-8674(02)01278-3 / Cell / Regulating the regulators by Freiman (2003)
  27. 10.1093/nar/9.23.6505 / Nucleic Acids Res. / Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis by Fried (1981)
  28. 10.1093/nar/5.9.3157 / Nucleic Acids Res. / DNAase footprinting by Galas (1978)
  29. 10.1093/nar/9.13.3047 / Nucleic Acids Res. / A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions by Garner (1981)
  30. 10.1016/0092-8674(86)90339-9 / Cell / Functional domains of the human glucocorticoid receptor by Giguère (1986)
  31. 10.1038/330670a0 / Nature / Transcription in yeast activated by a putative amphipathic α helix linked to a DNA binding unit by Giniger (1987)
  32. 10.1016/0092-8674(85)90336-8 / Cell / Specific DNA binding of GAL4, a positive regulatory protein of yeast by Giniger (1985)
  33. 10.1101/gad.14.2.121 / Genes Dev. / The coregulator exchange in transcriptional functions of nuclear receptors by Glass (2000)
  34. Goldberg, M.L. (1979). Sequence analysis of Drosophila histone genes. PhD thesis, Stanford University, Stanford, California.
  35. 10.1016/0092-8674(89)90013-5 / Cell / Cyclic AMP stimulates somatostatin gene transcription by phosphorylation of CREB at serine 133 by Gonzalez (1989)
  36. 10.1101/gad.14.13.1553 / Genes Dev. / CBP/p300 in cell growth, transformation, and development by Goodman (2000)
  37. 10.1128/MCB.2.9.1044 / Mol. Cell. Biol. / Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells by Gorman (1982)
  38. 10.1093/nar/13.23.8293 / Nucleic Acids Res. / Cloning of the human glucocorticoid receptor cDNA by Govindan (1985)
  39. 10.1016/0092-8674(86)90266-7 / Cell / Homologous recognition of a promoter domain common to the MSV LTR and the HSV tk gene by Graves (1986)
  40. 10.1016/0092-8674(83)90216-7 / Cell / Transcriptional activation of cloned human beta-globin genes by viral immediate-early gene products by Green (1983)
  41. 10.1146/annurev.cb.06.110190.003235 / Annu. Rev. Cell Biol. / Histone function in transcription by Grunstein (1990)
  42. 10.1016/S0092-8674(00)80521-8 / Cell / Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain by Gu (1997)
  43. 10.1101/gad.2.10.1216 / Genes Dev. / A family of immunologically related transcription factors that includes multiple forms of ATF and AP-1 by Hai (1988)
  44. 10.1016/S0092-8674(03)00360-X / Cell / Tails of intrigue by Hampsey (2003)
  45. 10.1016/S0021-9258(19)70162-8 / J. Biol. Chem. / Transcription of Simian virus 40 DNA in a HeLa whole cell extract by Handa (1981)
  46. 10.1016/0092-8674(80)90160-9 / Cell / Association of a 5S gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation by Honda (1980)
  47. 10.1016/0092-8674(85)90022-4 / Cell / GCN4 protein, synthesized in vitro, binds HIS3 regulatory sequences by Hope (1985)
  48. 10.1016/0092-8674(86)90070-X / Cell / Functional dissection of a eukaryotic transcriptional activator by Hope (1986)
  49. 10.1002/j.1460-2075.1987.tb02573.x / EMBO J. / GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA by Hope (1987)
  50. 10.1038/333635a0 / Nature / Structural and functional characterization of the short acidic transcriptional activation region of yeast GCN4 protein by Hope (1988)
  51. 10.1016/0092-8674(88)90118-3 / Cell / Transcription factor ATF interacts with the TATA factor to facilitate establishment of a preinitiation complex by Horikoshi (1988)
  52. 10.1016/0092-8674(87)90152-8 / Cell / Transcription factor AP-2 mediates induction by two different signal-transduction pathways by Imagawa (1987)
  53. 10.1016/0092-8674(83)90215-5 / Cell / Activation of gene expression by adenovirus and herpesvirus regulatory genes acting in trans and by a cis-acting adenovirus enhancer element by Imperiale (1983)
  54. 10.1016/0092-8674(88)90015-3 / Cell / O-glycosylation of eukaryotic transcription factors by Jackson (1988)
  55. 10.1016/S0092-8674(85)80119-7 / Cell / A repressor (MAT α2 product) and its operator control expression of a set of cell type specific genes in yeast by Johnson (1985)
  56. 10.1016/0092-8674(87)90358-8 / Cell / A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication by Jones (1987)
  57. 10.1073/pnas.83.16.5889 / Proc. Natl. Acad. Sci. USA / Affinity purification of sequence-specific DNA binding proteins by Kadonaga (1986)
  58. 10.1016/0092-8674(87)90594-0 / Cell / Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain by Kadonaga (1987)
  59. 10.1016/0092-8674(83)90410-5 / Cell / Enhancer elements by Khoury (1983)
  60. 10.1128/MCB.12.10.4251 / Mol. Cell. Biol. / Cloning of GT box-binding proteins by Kingsley (1992)
  61. 10.1146/annurev.cb.08.110192.003023 / Annu. Rev. Cell Biol. / Chromatin structure and transcription by Kornberg (1992)
  62. {'key': '10.1016/S0092-8674(03)01078-X_BIB62', 'series-title': 'The Structure of Scientific Revolutions', 'author': 'Kuhn', 'year': '1970'} / The Structure of Scientific Revolutions by Kuhn (1970)
  63. 10.1016/S0955-0674(03)00039-5 / Curr. Opin. Cell Biol. / Genomic insulators by Kuhn (2003)
  64. 10.1016/S0092-8674(02)01004-8 / Cell / Setting the boundaries of chromatin domains and nuclear organization by Labrador (2002)
  65. 10.1126/science.3289117 / Science / The leucine zipper by Landschulz (1988)
  66. 10.1126/science.1388287 / Science / Threshold phenomena and long-distance activation of transcription by RNA polymerase II by Laybourn (1992)
  67. 10.1016/0092-8674(87)90612-X / Cell / Purified transcription factor AP-1 interacts with TPA-inducible enhancer elements by Lee (1987)
  68. 10.1101/gad.831000 / Genes Dev. / Orchestrated response by Lemon (2000)
  69. 10.1016/0092-8674(93)90076-3 / Cell / Genetic evidence that an activation domain of GAL4 does not require acidity and may form a β sheet by Leuther (1993)
  70. 10.1016/0092-8674(87)90015-8 / Cell / A new class of yeast transcriptional activators by Ma (1987)
  71. 10.1073/pnas.77.7.3855 / Proc. Natl. Acad. Sci. USA / DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract by Manley (1980)
  72. 10.1016/S0092-8674(02)00641-4 / Cell / Combinatorial control of gene expression by nuclear receptors and coregulators by McKenna (2002)
  73. 10.1126/science.6283634 / Science / Transcriptional control signals of a eukaryotic protein-coding gene by McKnight (1982)
  74. 10.1016/0092-8674(89)90108-6 / Cell / The proline-rich transcriptional activator of CTF/NF-I is distinct from the replication and DNA binding domain by Mermod (1989)
  75. 10.1038/312779a0 / Nature / Characterization of a steroid hormone receptor gene and mRNA in wild-type and mutant cells by Miesfeld (1984)
  76. 10.1126/science.2667136 / Science / Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins by Mitchell (1989)
  77. 10.1016/0092-8674(87)90512-5 / Cell / Positive and negative regulation of transcription in vitro by Mitchell (1987)
  78. 10.1002/j.1460-2075.1985.tb04118.x / EMBO J. / Specific interaction between a transcription factor and the upstream element of the adenovirus-2 major late promoter by Miyamoto (1985)
  79. 10.1038/328175a0 / Nature / Binding of a nuclear protein to the cyclic-AMP response element of the somatostatin gene by Montminy (1987)
  80. 10.1126/science.6251549 / Science / Expression of a bacterial gene in mammalian cells by Mulligan (1980)
  81. 10.1038/nrm1049 / Nat. Rev. Mol. Cell Biol. / How the ubiquitin-proteasome system controls transcription by Muratani (2003)
  82. 10.1016/0092-8674(89)90682-X / Cell / A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins by Murre (1989)
  83. 10.1016/0092-8674(81)90056-8 / Cell / SV40 gene expression is modulated by the cooperative binding of T antigen to DNA by Myers (1981)
  84. 10.1016/S0092-8674(02)00654-2 / Cell / Cooperation between complexes that regulate chromatin structure and transcription by Narlikar (2002)
  85. 10.1038/287795a0 / Nature / Mutations affecting segment number and polarity in Drosophila by Nüsslein-Volhard (1980)
  86. 10.1016/S0092-8674(88)80036-9 / Cell / Herpes simplex virus regulatory elements and the immunoglobulin octamer domain bind a common factor and are both targets for virion transactivation by O'Hare (1988)
  87. 10.1128/MCB.9.7.2944 / Mol. Cell. Biol. / Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides by Oliphant (1989)
  88. 10.1146/annurev.bi.61.070192.005201 / Annu. Rev. Biochem. / Transcription factors by Pabo (1992)
  89. 10.1146/annurev.bi.63.070194.001405 / Annu. Rev. Biochem. / Role of chromatin structure in the regulation of transcription by RNA polymerase II by Paranjape (1994)
  90. 10.1016/0092-8674(84)90229-0 / Cell / A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity by Parker (1984)
  91. 10.1016/0092-8674(84)90323-4 / Cell / A Drosophila RNA polymerase II transcription factor binds to the regulatory site of an hsp70 gene by Parker (1984)
  92. 10.1073/pnas.78.11.6628 / Proc. Natl. Acad. Sci. USA / Purified glucocorticoid receptors bind selectively in vitro to a cloned DNA fragment whose transcription is regulated by glucocorticoids in vivo by Payvar (1981)
  93. 10.1016/0092-8674(83)90171-X / Cell / Sequence-specific binding of glucocorticoid receptor to MTV DNA at sites within and upstream of the transcribed region by Payvar (1983)
  94. 10.1016/0092-8674(82)90249-5 / Cell / A regulatory upstream promoter element in the Drosophila hsp 70 heat-shock gene by Pelham (1982)
  95. 10.1016/0092-8674(88)90122-5 / Cell / A movable and regulable inactivation function within the steroid binding domain of the glucocorticoid receptor by Picard (1988)
  96. 10.1016/S0092-8674(88)80035-7 / Cell / A complex formed between cell components and an HSV structural polypeptide binds to a viral immediate early gene regulatory DNA sequence by Preston (1988)
  97. 10.1038/335683a0 / Nature / How eukaryotic transcriptional activators work by Ptashne (1988)
  98. 10.1038/386569a0 / Nature / Transcriptional activation by recruitment by Ptashne (1997)
  99. 10.1073/pnas.77.10.5706 / Proc. Natl. Acad. Sci. USA / Regulation of simian virus 40 early transcription in vitro by a purified tumor antigen by Rio (1980)
  100. 10.1016/S0021-9258(17)36106-9 / J. Biol. Chem. / Purification of nuclear factor I by DNA recognition site affinity chromatography by Rosenfeld (1986)
  101. 10.1016/S0092-8674(88)91087-2 / Cell / The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged by Rougvie (1988)
  102. 10.1038/335563a0 / Nature / GAL4–VP16 is an unusually potent transcriptional activator by Sadowski (1988)
  103. 10.1016/0092-8674(81)90429-3 / Cell / The binding of a transcription factor to deletion mutants of a 5S ribosomal RNA gene by Sakonju (1981)
  104. 10.1126/science.1062079 / Science / Regulation of transcriptional activation domain function by ubiquitin by Salghetti (2001)
  105. 10.1038/334218a0 / Nature / A family of human CCAAT-box-binding proteins active in transcription and DNA replication by Santoro (1988)
  106. 10.1016/0092-8674(85)90021-2 / Cell / Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region by Sawadogo (1985)
  107. 10.1038/304749a0 / Nature / The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus by Scheidereit (1983)
  108. 10.1016/0092-8674(87)90101-2 / Cell / Identification and purification of a human lymphoid-specific octamer-binding protein (OTF-2) that activates transcription of an immunoglobulin promoter in vitro by Scheidereit (1987)
  109. 10.1016/0168-9525(85)90088-5 / Trends Genet. / Enhancers and eukaryotic gene transcription by Serfling (1985)
  110. 10.1038/333210a0 / Nature / Transcriptional activation by Sigler (1988)
  111. 10.1038/319154a0 / Nature / A nuclear factor that binds to a conserved sequence motif in transcriptional control elements of immunoglobulin genes by Singh (1986)
  112. 10.1016/S0092-8674(88)80034-5 / Cell / Molecular cloning of an enhancer binding protein by Singh (1988)
  113. 10.1038/47412 / Nature / The language of covalent histone modifications by Strahl (2000)
  114. 10.1073/pnas.78.7.4461 / Proc. Natl. Acad. Sci. USA / Deletion mapping a eukaryotic promoter by Struhl (1981)
  115. 10.1016/0092-8674(87)90277-7 / Cell / Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast by Struhl (1987)
  116. 10.1101/gad.1.10.1147 / Genes Dev. / A 100-kD HeLa cell octamer binding protein (OBP100) interacts differently with two separate octamer-related sequences within the SV40 enhancer by Sturm (1987)
  117. 10.1016/0092-8674(78)90147-2 / Cell / The binding site on SV40 DNA for a T antigen-related protein by Tjian (1978)
  118. 10.1002/j.1460-2075.1987.tb02564.x / EMBO J. / Identification and purification of a polypeptide that binds to the c-fos serum response element by Treisman (1987)
  119. 10.1101/gad.2.6.718 / Genes Dev. / Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression by Triezenberg (1988)
  120. 10.1101/gad.2.6.730 / Genes Dev. / Evidence of DNA:protein interactions that mediate HSV-1 immediate early gene activation by VP16 by Triezenberg (1988)
  121. 10.1016/0092-8674(93)90077-4 / Cell / The acidic activation domains of the GCN4 and GAL4 proteins are not α helical but form β sheets by Van Hoy (1993)
  122. 10.1073/pnas.82.23.7889 / Proc. Natl. Acad. Sci. USA / Cloning of the human estrogen receptor cDNA by Walter (1985)
  123. 10.1101/gad.8.14.1678 / Genes Dev. / Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos by Walter (1994)
  124. 10.1038/285367a0 / Nature / Specific in vitro initiation of transcription on conalbumin and ovalbumin genes and comparison with adenovirus-2 early and late genes by Wasylyk (1980)
  125. 10.1016/0092-8674(79)90065-5 / Cell / Selective and accurate initiation of transcription at the Ad2 major late promoter in a soluble system dependent on purified RNA polymerase II and DNA by Weil (1979)
  126. 10.1126/science.2581314 / Science / Identification of human glucocorticoid receptor complementary DNA clones by epitope selection by Weinberger (1985)
  127. 10.1073/pnas.85.16.5819 / Proc. Natl. Acad. Sci. USA / Formation of stable transcription complexes as assayed by analysis of individual templates by Weintraub (1988)
  128. {'key': '10.1016/S0092-8674(03)01078-X_BIB128', 'series-title': 'Chromatin', 'author': 'Wolffe', 'year': '1992'} / Chromatin by Wolffe (1992)
  129. 10.1126/science.3685975 / Science / Purification and properties of Drosophila heat shock activator protein by Wu (1987)
  130. 10.1073/pnas.75.5.2175 / Proc. Natl. Acad. Sci. USA / Adenovirus DNA-directed transcription of 5.5S RNA in vitro by Wu (1978)
  131. 10.1146/annurev.ge.19.120185.001233 / Annu. Rev. Genet. / Steroid receptor regulated transcription of specific genes and gene networks by Yamamoto (1985)
  132. 10.1016/S0092-8674(02)00810-3 / Cell / Recruitment of O-GlcNAc transferase to promoters by corepressor mSin3A by Yang (2002)
  133. 10.1016/S0168-9525(02)02595-7 / Trends Genet. / On the shoulders of giants by Yang (2002)
  134. 10.1016/0092-8674(94)90058-2 / Cell / Transcriptional elongation by RNA polymerase II is stimulated by transactivators by Yankulov (1994)
  135. 10.1101/gad.927301 / Genes Dev. / Transcription regulation by histone methylation by Zhang (2001)
Dates
Type When
Created 21 years, 4 months ago (March 30, 2004, 5:20 a.m.)
Deposited 2 years, 3 months ago (April 28, 2023, 1:52 a.m.)
Indexed 40 minutes ago (Aug. 25, 2025, 11:06 p.m.)
Issued 21 years, 7 months ago (Jan. 1, 2004)
Published 21 years, 7 months ago (Jan. 1, 2004)
Published Print 21 years, 7 months ago (Jan. 1, 2004)
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@article{Kadonaga_2004, title={Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors}, volume={116}, ISSN={0092-8674}, url={http://dx.doi.org/10.1016/s0092-8674(03)01078-x}, DOI={10.1016/s0092-8674(03)01078-x}, number={2}, journal={Cell}, publisher={Elsevier BV}, author={Kadonaga, James T}, year={2004}, month=jan, pages={247–257} }