DOI: 10.1016/s0092-8674(00)80872-7. Structural Organization of the RNA Polymerase-Promoter Open Complex

Structural Organization of the RNA Polymerase-Promoter Open Complex

10.1016/s0092-8674(00)80872-7

Crossref journal-article

Elsevier BV

Cell (78)

Bibliography

Naryshkin, N., Revyakin, A., Kim, Y., Mekler, V., & Ebright, R. H. (2000). Structural Organization of the RNA Polymerase-Promoter Open Complex. Cell, 101(6), 601â611.

Authors 5

Nikolai Naryshkin (first)
Andrey Revyakin (additional)
Younggyu Kim (additional)
Vladimir Mekler (additional)
Richard H Ebright (additional)

References 58 Referenced 150

{'key': '10.1016/S0092-8674(00)80872-7_BIB1', 'series-title': 'Sequencing of Proteins and Peptides', 'author': 'Allen', 'year': '1989'} / Sequencing of Proteins and Peptides by Allen (1989)
10.1074/jbc.273.47.31381 / J. Biol. Chem. / Localization of a σ70 binding site on the N-terminus of the Escherichia coli RNA polymerase β′ subunit by Arthur (1998)
{'key': '10.1016/S0092-8674(00)80872-7_BIB3', 'article-title': 'Mutational analysis of β′260–309, a σ70 binding site located on Escherichia coli core RNA polymerase', 'volume': 'in press', 'author': 'Arthur', 'year': '2000', 'journal-title': 'J. Biol. Chem.'} / J. Biol. Chem. / Mutational analysis of β′260–309, a σ70 binding site located on Escherichia coli core RNA polymerase by Arthur (2000)
10.1016/S0092-8674(94)90682-3 / Cell / Domain organization of RNA polymerase alpha subunit by Blatter (1994)
10.1074/jbc.274.4.2263 / J. Biol. Chem. / Organization of open complexes at Escherichia coli promoters by Bown (1999)
10.1074/jbc.275.5.3661 / J. Biol. Chem. / Identification of RNA polymerase β′ subunit segment contacting the melted region of the lac UV5 promoter by Brodolin (2000)
10.1006/jmbi.1998.2391 / J. Mol. Biol. / The kinetics of sigma subunit directed promoter recognition by E. coli RNA polymerase by Buckle (1999)
10.1093/nar/28.9.1864 / Nucleic Acids Res. / DNA sequence elements located immediately upstream of the −10 hexamer in Escherichia coli promoters by Burr (2000)
10.1016/0092-8674(94)90063-9 / Cell / Promoter structure, promoter recognition, and transcription activation in prokaryotes by Busby (1994)
10.1006/jmbi.1999.3161 / J. Mol. Biol. / Transcription activation by catabolite activator protein (CAP) by Busby (1999)
10.1074/jbc.273.49.32995 / J. Biol. Chem. / Conformational changes of Escherichia coli RNA polymerase σ70 factor induced by binding to the core enzyme by Callaci (1998)
10.1021/bi00552a023 / Biochemistry / Characterization of ribonucleic acid polymerase-T7 promoter binary complexes by Cech (1980)
{'key': '10.1016/S0092-8674(00)80872-7_BIB13', 'series-title': 'RNA Polymerase', 'article-title': 'RNA polymerase—an overview', 'author': 'Chamberlin', 'year': '1976'} / RNA Polymerase / RNA polymerase—an overview by Chamberlin (1976)
10.1126/science.288.5466.640 / Science / Architecture of RNA polymerase II and implications for the transcription mechanism by Cramer (2000)
10.1016/0092-8674(91)90144-N / Cell / Three-dimensional structure of yeast RNA polymerase II at 16 Å resolution by Darst (1991)
10.1006/jsbi.1998.4057 / J. Struct. Biol. / Insights into Escherichia coli RNA polymerase structure from a combination of X-ray and electron crystallography by Darst (1998)
10.1101/sqb.1998.63.269 / Cold Spring Harbor Symp. Quant. Biol. / Structural studies of Escherichia coli RNA polymerase by Darst (1998)
10.1128/JB.180.12.3019-3025.1998 / J. Bacteriol. / RNA polymerase-promoter interactions by deHaseth (1998)
10.1101/sqb.1998.63.11 / Cold Spring Harbor Symp. Quant. Biol. / RNA polymerase-DNA interaction by Ebright (1998)
10.1101/gad.13.16.2134 / Genes Dev. / Bacterial promoter architecture by Estrem (1999)
10.1111/j.1432-1033.1989.tb14684.x / Eur. J. Biochem. / Studies of the functional topography of Escherichia coli RNA polymerase. A method for localization of the sites of affinity labelling by Grachev (1987)
{'key': '10.1016/S0092-8674(00)80872-7_BIB22', 'series-title': 'Transcriptional Regulation', 'article-title': 'Bacterial sigma factors', 'author': 'Gross', 'year': '1992'} / Transcriptional Regulation / Bacterial sigma factors by Gross (1992)
10.1101/sqb.1998.63.141 / Cold Spring Harb. Symp. Quant. Biol. / The functional and regulatory roles of sigma factors in transcription by Gross (1998)
10.1016/0003-2697(80)90013-5 / Anal. Biochem. / Elution of proteins from sodium dodecyl sulfate-polyacrylamide gels, removal of sodium dodecyl sulfate, and renaturation of enzymatic activity by Hager (1980)
10.1126/science.270.5241.1495 / Science / Solution structure of the activator contact domain of the RNA polymerase alpha subunit by Jeon (1995)
10.1016/0022-2836(88)90517-7 / J. Mol. Biol. / Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance by Jin (1988)
10.1073/pnas.94.23.12268 / Proc. Natl. Acad. Sci. USA / Trajectory of DNA in the RNA polymerase II transcription preinitiation complex by Kim (1997)
10.1073/pnas.93.20.10620 / Proc. Natl. Acad. Sci. USA / High-resolution mapping of nucleoprotein complexes by site-specific protein-DNA photocrosslinking by Lagrange (1996)
10.1101/gad.12.1.34 / Genes Dev. / New core promoter element in RNA polymerase II-dependent transcription by Lagrange (1998)
10.1021/bi00261a022 / Biochemistry / Nitrocellulose filter binding studies of the interactions of Escherichia coli RNA polymerase holoenzyme with deoxyribonucleic acid restriction fragments by Melancon (1982)
10.1021/bi00291a017 / Biochemistry / Direct evidence for the preferential binding of Escherichia coli RNA polymerase holoenzyme to the ends of deoxyribonucleic acid restriction fragments by Melancon (1983)
Naryshkin, N., Kim, Y., Dong, Q., and Ebright, R. (2000). Site-specific protein-DNA photocrosslinking: analysis of bacterial transcription initiation complexes. In Methods in Molecular Biology: Protein-DNA Interaction Protocols, T. Moss, ed. (Totowa, NJ: Humana), in press.
Niu, W. (1998). Identification and characterization of interactions between a transcription activator and the transcriptional machinery, Ph.D. thesis, Rutgers University, New Brunswick, NJ.
10.1016/S0092-8674(00)81806-1 / Cell / Transcription activation at class II CAP-dependent promoters by Niu (1996)
10.1006/jmbi.1999.2641 / J. Mol. Biol. / Transcription elongation by Nudler (1999)
10.1126/science.273.5272.211 / Science / Transcription processivity by Nudler (1996)
10.1126/science.281.5375.424 / Science / Spatial organization of transcription elongation complex in Escherichia coli by Nudler (1998)
10.1073/pnas.97.2.617 / Proc. Natl. Acad. Sci. USA / Direct localization of a β-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase by Opalka (2000)
10.1073/pnas.95.11.6021 / Proc. Natl. Acad. Sci. USA / Mapping the σ70 subunit contact sites on Escherichia coli RNA polymerase with a σ70-conjugated chemical protease by Owens (1998)
10.1021/bi980188n / Biochemistry / Mapping the promoter DNA sites proximal to conserved regions of σ70 in an Escherichia coli RNA polymerase-lac UV5 open promoter complex by Owens (1998)
10.1006/jmbi.1996.0409 / J. Mol. Biol. / Structure of the CAP-DNA complex at 2.5 Å resolution by Parkinson (1996)
10.1073/pnas.89.21.10287 / Proc. Natl. Acad. Sci. USA / Determination of the orientation of a DNA binding motif in a protein-DNA complex by photocrosslinking by Pendergrast (1992)
10.1016/S0021-9258(19)63363-6 / J. Biol. Chem. / Binding of Escherichia coli RNA polymerase to T7 DNA. Displacement of holoenzyme from promoter complexes by heparin by Pfeffer (1977)
10.1016/S0092-8674(00)81513-5 / Cell / Electron crystal structure of an RNA polymerase II transcription elongation complex by Poglitsch (1999)
{'key': '10.1016/S0092-8674(00)80872-7_BIB45', 'series-title': 'Escherichia coli and Salmonella', 'article-title': 'Escherichia coli RNA polymerase (Eσ70), promoters, and the kinetics of the steps of transcription initiation', 'author': 'Record', 'year': '1996'} / Escherichia coli and Salmonella / Escherichia coli RNA polymerase (Eσ70), promoters, and the kinetics of the steps of transcription initiation by Record (1996)
Reznikoff, W. (1984). Gene expression in microbes: the lactose operon model system. In Society for General Microbiology Symposium, 36, D. Kelly and N. Carr, eds. (Cambridge: Cambridge University Press), pp. 195–217.
10.1093/emboj/18.16.4464 / EMBO J. / Wrapping of DNA around the E. coli RNA polymerase open promoter complex by Rivetti (1999)
10.1016/S0021-9258(18)83152-0 / J. Biol. Chem. / KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo by Sasse-Dwight (1989)
10.1126/science.1653449 / Science / Crystal structure of a CAP-DNA complex by Schultz (1991)
{'key': '10.1016/S0092-8674(00)80872-7_BIB50', 'series-title': 'Transcriptional Regulation', 'article-title': 'Yeast RNA polymerase subunits and genes', 'author': 'Sentenac', 'year': '1992'} / Transcriptional Regulation / Yeast RNA polymerase subunits and genes by Sentenac (1992)
10.1073/pnas.92.10.4591 / Proc. Natl. Acad. Sci. USA / Assembly of functional Escherichia coli RNA polymerase containing β subunit fragments by Severinov (1995)
10.1074/jbc.271.44.27969 / J. Biol. Chem. / Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the β and β′ subunits of Escherichia coli RNA polymerase by Severinov (1996)
{'key': '10.1016/S0092-8674(00)80872-7_BIB53', 'series-title': 'Protein Protocols Handbook', 'article-title': 'Chemical cleavage of proteins at asparaginyl-glycyl peptide bonds', 'author': 'Smith', 'year': '1996'} / Protein Protocols Handbook / Chemical cleavage of proteins at asparaginyl-glycyl peptide bonds by Smith (1996)
10.1073/pnas.92.11.4902 / Proc. Natl. Acad. Sci. USA / Rapid RNA polymerase genetics by Tang (1995)
10.1126/science.281.5377.660 / Science / An integrated model of the transcription complex in elongation, termination, and editing by von Hippel (1998)
10.1146/annurev.bi.60.070191.003353 / Annu. Rev. Biochem. / RNA polymerase II by Young (1991)
10.1080/07391102.1991.10507929 / J. Biomol. Struct. Dyn. / Derivatives of CAP having no solvent-accessible cysteine residues, or having a unique solvent-accessible cysteine residue at amino acid 2 of the helix-turn-helix motif by Zhang (1991)
10.1016/S0092-8674(00)81515-9 / Cell / Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution by Zhang (1999)

Dates

Type	When
Created	21 years, 3 months ago (May 11, 2004, 6:35 a.m.)
Deposited	4 years, 2 months ago (June 17, 2021, 8:45 a.m.)
Indexed	1 month, 2 weeks ago (July 11, 2025, 6:54 a.m.)
Issued	25 years, 2 months ago (June 1, 2000)
Published	25 years, 2 months ago (June 1, 2000)
Published Print	25 years, 2 months ago (June 1, 2000)

Funders 0

None

BibTeX

@article{Naryshkin_2000, title={Structural Organization of the RNA Polymerase-Promoter Open Complex}, volume={101}, ISSN={0092-8674}, url={http://dx.doi.org/10.1016/s0092-8674(00)80872-7}, DOI={10.1016/s0092-8674(00)80872-7}, number={6}, journal={Cell}, publisher={Elsevier BV}, author={Naryshkin, Nikolai and Revyakin, Andrey and Kim, Younggyu and Mekler, Vladimir and Ebright, Richard H}, year={2000}, month=jun, pages={601–611} }

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      "author": "Kim",
      "year": "1997",
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      "volume": "93",
      "author": "Lagrange",
      "year": "1996",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
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      "author": "Lagrange",
      "year": "1998",
      "journal-title": "Genes Dev."
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      "volume": "21",
      "author": "Melancon",
      "year": "1982",
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      "author": "Melancon",
      "year": "1983",
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    },
    {
      "key": "10.1016/S0092-8674(00)80872-7_BIB33",
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    },
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      "article-title": "Transcription activation at class II CAP-dependent promoters",
      "volume": "87",
      "author": "Niu",
      "year": "1996",
      "journal-title": "Cell"
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      "article-title": "Transcription elongation",
      "volume": "288",
      "author": "Nudler",
      "year": "1999",
      "journal-title": "J. Mol. Biol."
    },
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      "doi-asserted-by": "publisher",
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      "author": "Nudler",
      "year": "1996",
      "journal-title": "Science"
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      "author": "Nudler",
      "year": "1998",
      "journal-title": "Science"
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      "first-page": "617",
      "DOI": "10.1073/pnas.97.2.617",
      "article-title": "Direct localization of a \u03b2-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase",
      "volume": "97",
      "author": "Opalka",
      "year": "2000",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
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      "doi-asserted-by": "publisher",
      "first-page": "6021",
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      "volume": "95",
      "author": "Owens",
      "year": "1998",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
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      "doi-asserted-by": "publisher",
      "first-page": "7670",
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      "volume": "37",
      "author": "Owens",
      "year": "1998",
      "journal-title": "Biochemistry"
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      "volume": "260",
      "author": "Parkinson",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
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      "volume": "89",
      "author": "Pendergrast",
      "year": "1992",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
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      "article-title": "Binding of Escherichia coli RNA polymerase to T7 DNA. Displacement of holoenzyme from promoter complexes by heparin",
      "volume": "252",
      "author": "Pfeffer",
      "year": "1977",
      "journal-title": "J. Biol. Chem."
    },
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      "volume": "98",
      "author": "Poglitsch",
      "year": "1999",
      "journal-title": "Cell"
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      "key": "10.1016/S0092-8674(00)80872-7_BIB45",
      "series-title": "Escherichia coli and Salmonella",
      "article-title": "Escherichia coli RNA polymerase (E\u03c370), promoters, and the kinetics of the steps of transcription initiation",
      "author": "Record",
      "year": "1996"
    },
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    },
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      "volume": "18",
      "author": "Rivetti",
      "year": "1999",
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      "first-page": "8074",
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      "article-title": "KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo",
      "volume": "264",
      "author": "Sasse-Dwight",
      "year": "1989",
      "journal-title": "J. Biol. Chem."
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      "first-page": "1001",
      "DOI": "10.1126/science.1653449",
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      "volume": "253",
      "author": "Schultz",
      "year": "1991",
      "journal-title": "Science"
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      "series-title": "Transcriptional Regulation",
      "article-title": "Yeast RNA polymerase subunits and genes",
      "author": "Sentenac",
      "year": "1992"
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      "article-title": "Assembly of functional Escherichia coli RNA polymerase containing \u03b2 subunit fragments",
      "volume": "92",
      "author": "Severinov",
      "year": "1995",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
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      "doi-asserted-by": "publisher",
      "first-page": "27969",
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      "volume": "271",
      "author": "Severinov",
      "year": "1996",
      "journal-title": "J. Biol. Chem."
    },
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      "key": "10.1016/S0092-8674(00)80872-7_BIB53",
      "series-title": "Protein Protocols Handbook",
      "article-title": "Chemical cleavage of proteins at asparaginyl-glycyl peptide bonds",
      "author": "Smith",
      "year": "1996"
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      "volume": "92",
      "author": "Tang",
      "year": "1995",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
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      "first-page": "660",
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      "article-title": "An integrated model of the transcription complex in elongation, termination, and editing",
      "volume": "281",
      "author": "von Hippel",
      "year": "1998",
      "journal-title": "Science"
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      "article-title": "RNA polymerase II",
      "volume": "60",
      "author": "Young",
      "year": "1991",
      "journal-title": "Annu. Rev. Biochem."
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      "first-page": "463",
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      "volume": "9",
      "author": "Zhang",
      "year": "1991",
      "journal-title": "J. Biomol. Struct. Dyn."
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