10.1016/s0076-6879(10)83004-6
Crossref book-chapter
Elsevier
Methods in Enzymology (78)
Bibliography

Lawson, C. L. (2010). Unified Data Resource for Cryo-EM. Cryo-EM, Part C: Analyses, Interpretation, and Case Studies, 73–90.

Authors 1
  1. Catherine L. Lawson (first)
References 84 Referenced 6
  1. 10.1038/emboj.2009.36 / EMBO J. / The tail sheath structure of bacteriophage T4: A molecular machine for infecting bacteria by Aksyuk (2009)
  2. 10.1016/j.str.2009.04.005 / Structure / The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate by Aksyuk (2009)
  3. 10.1128/JVI.79.23.14967-14970.2005 / J. Virol. / Common ancestry of herpesviruses and tailed DNA bacteriophages by Baker (2005)
  4. 10.1016/j.jsb.2006.05.013 / J. Struct. Biol. / Automated segmentation of molecular subunits in electron cryomicroscopy density maps by Baker (2006)
  5. 10.1016/j.str.2006.11.008 / Structure / Identification of secondary structure elements in intermediate-resolution density maps by Baker (2007)
  6. 10.1016/S0092-8674(00)81455-5 / Cell / A 9 A resolution X-ray crystallographic map of the large ribosomal subunit by Ban (1998)
  7. 10.1515/BC.2004.113 / Biol. Chem. / Mapping molecular landscapes inside cells by Baumeister (2004)
  8. 10.1038/nsb1203-980 / Nat. Struct. Biol. / Announcing the worldwide Protein Data Bank by Berman (2003)
  9. 10.1016/S0022-2836(77)80200-3 / J. Mol. Biol. / Protein Data Bank: A computer-based archival file for macromolecular structures by Bernstein (1977)
  10. 10.1006/jsbi.2001.4360 / J. Struct. Biol. / Purification, crystallization, and preliminary X-ray diffraction analysis of the Tricorn protease hexamer from Thermoplasma acidophilum by Bosch (2001)
  11. 10.1126/science.285.5436.2095 / Science / X-ray crystal structures of 70S ribosome functional complexes by Cate (1999)
  12. 10.1016/j.str.2006.05.007 / Structure / Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery by Chang (2006)
  13. 10.1016/S0168-1702(01)00381-1 / Virus Res. / High resolution structural studies of complex icosahedral viruses: A brief overview by Chiu (2002)
  14. 10.1016/j.str.2009.03.005 / Structure / Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy by Cong (2009)
  15. {'key': '10.1016/S0076-6879(10)83004-6_bib0075', 'series-title': 'The Pymol Molecular Graphics System', 'author': 'Delano', 'year': '2002'} / The Pymol Molecular Graphics System by Delano (2002)
  16. 10.1016/j.cell.2005.04.015 / Cell / Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation by Diaconu (2005)
  17. 10.1016/j.jmb.2009.07.008 / J. Mol. Biol. / Refinement of protein structures into low-resolution density maps using Rosetta by DiMaio (2009)
  18. 10.1038/38537 / Nature / Structure of a viral procapsid with molecular scaffolding by Dokland (1997)
  19. 10.1107/S0907444998002467 / Acta Crystallogr. D Biol. Crystallogr. / Structure determination of the phiX174 closed procapsid by Dokland (1998)
  20. 10.1007/s12033-008-9127-7 / Mol. Biotechnol. / Data deposition and annotation at the worldwide protein data bank by Dutta (2009)
  21. 10.1038/nsb0503-313 / Nat. Struct. Biol. / A database for 'em (2003)
  22. 10.1107/S0907444904019158 / Acta Crystallogr. D Biol. Crystallogr. / Coot: Model-building tools for molecular graphics by Emsley (2004)
  23. 10.1016/j.jsb.2008.05.010 / J. Struct. Biol. / Sharpening high resolution information in single particle electron cryomicroscopy by Fernandez (2008)
  24. 10.1038/nature03079 / Nature / Molecular model for a complete clathrin lattice from electron cryomicroscopy by Fotin (2004)
  25. 10.1017/S0033583509990059 / Q. Rev. Biophys. / Single-particle reconstruction of biological macromolecules in electron microscopy–30 years by Frank (2009)
  26. 10.1016/S0969-2126(02)00942-5 / Structure (Cambridge) / Depositing electron microscopy maps by Fuller (2003)
  27. 10.1016/S0092-8674(00)80690-X / Cell / Solution structure of the E. coli 70S ribosome at 11.5 A resolution by Gabashvili (2000)
  28. 10.1016/j.jsb.2006.06.010 / J. Struct. Biol. / Visualizing density maps with UCSF Chimera by Goddard (2007)
  29. 10.1038/nature04321 / Nature / Lipid-protein interactions in double-layered two-dimensional AQP0 crystals by Gonen (2005)
  30. 10.1038/26694 / Nature / The atomic structure of the bluetongue virus core by Grimes (1998)
  31. 10.1128/JVI.79.21.13262-13274.2005 / J. Virol. / N-linked glycosylation of west nile virus envelope proteins influences particle assembly and infectivity by Hanna (2005)
  32. 10.1023/A:1023813504011 / J. Comput. Aided Mol. Des. / AstexViewer: A visualisation aid for structure-based drug design by Hartshorn (2002)
  33. 10.1016/j.jmb.2003.09.035 / J. Mol. Biol. / The refined structure of a protein catenane: The HK97 bacteriophage capsid at 3.44 Å resolution by Helgstrand (2003)
  34. 10.1016/S0022-2836(05)80271-2 / J. Mol. Biol. / Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy by Henderson (1990)
  35. 10.1016/j.jsb.2003.09.009 / J. Struct. Biol. / EMDep: A web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information by Henrick (2003)
  36. 10.1016/j.jsb.2005.06.001 / J. Struct. Biol. / Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology by Heymann (2005)
  37. 10.1038/nsmb.1599 / Nat. Struct. Mol. Biol. / Three-dimensional reconstruction of the Shigella T3SS transmembrane regions reveals 12-fold symmetry and novel features throughout by Hodgkinson (2009)
  38. 10.1002/0471250953.bi0507s24 / Curr. Protoc. Bioinformatics / Using VMD: An introductory tutorial by Hsin (2008)
  39. 10.1016/j.sbi.2007.03.005 / Curr. Opin. Struct. Biol. / Membrane-containing viruses with icosahedrally symmetric capsids by Huiskonen (2007)
  40. 10.1016/j.jsb.2003.09.028 / J. Struct. Biol. / Applications of bilateral denoising filter in biological electron microscopy by Jiang (2003)
  41. 10.1073/pnas.0603488103 / Proc. Natl Acad. Sci. USA / West Nile virus in complex with the Fab fragment of a neutralizing monoclonal antibody by Kaufmann (2006)
  42. 10.1038/nsb970 / Nat. Struct. Biol. / Three-dimensional structure of bacteriophage T4 baseplate by Kostyuchenko (2003)
  43. 10.1016/S0092-8674(02)00660-8 / Cell / Structure of dengue virus: Implications for flavivirus organization, maturation, and fusion by Kuhn (2002)
  44. 10.1107/S0907444908017393 / Acta Crystallogr. D Biol. Crystallogr. / Representation of viruses in the remediated PDB archive by Lawson (2008)
  45. 10.1016/j.vaccine.2005.03.006 / Vaccine / A recombinant envelope protein vaccine against West Nile virus by Ledizet (2005)
  46. 10.1016/j.sbi.2003.09.007 / Curr. Opin. Struct. Biol. / Complementary approaches to structure determination of icosahedral viruses by Lee (2003)
  47. 10.1016/j.str.2009.09.017 / Structure / Global conformational changes of ribosome observed by normal mode fitting for 3D Cryo-EM structures by Matsumoto (2009)
  48. 10.1146/annurev.biophys.35.040405.101950 / Annu. Rev. Biophys. Biomol. Struct. / Ribosome dynamics: Insights from atomic structure modeling into cryo-electron microscopy maps by Mitra (2006)
  49. 10.1038/nature02165 / Nature / Structure of the dengue virus envelope protein after membrane fusion by Modis (2004)
  50. 10.1128/JVI.79.2.1223-1231.2005 / J. Virol. / Variable surface epitopes in the crystal structure of dengue virus type 3 envelope glycoprotein by Modis (2005)
  51. 10.1016/j.jmb.2009.01.014 / J. Mol. Biol. / Cryo-electron microscopy of the vacuolar ATPase motor reveals its mechanical and regulatory complexity by Muench (2009)
  52. 10.1126/science.1089316 / Science / Structure of West Nile virus by Mukhopadhyay (2003)
  53. 10.2144/000112568 / Biotechniques / Electron cryotomography by Murphy (2007)
  54. 10.1038/nrmicro1283 / Nat. Rev. Microbiol. / Exploring icosahedral virus structures with VIPER by Natarajan (2005)
  55. 10.1038/nature03956 / Nature / Structural basis of West Nile virus neutralization by a therapeutic antibody by Nybakken (2005)
  56. 10.1016/1047-8477(90)90105-L / J. Struct. Biol. / The three-dimensional structure of frozen-hydrated Nudaurelia capensis beta virus, a T = 4 insect virus by Olson (1990)
  57. 10.1002/jcc.20084 / J. Comput. Chem. / UCSF Chimera—A visualization system for exploratory research and analysis by Pettersen (2004)
  58. 10.1016/j.jsb.2010.03.007 / J. Struct. Biol. / Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions by Pintilie (1999)
  59. 10.1126/science.286.5438.287 / Science / X-ray crystallographic structure of the Norwalk virus capsid by Prasad (1999)
  60. 10.1038/35010041 / Nature / Structure of the reovirus core at 3.6 Å resolution by Reinisch (2000)
  61. 10.1093/bioinformatics/btn461 / Bioinformatics / Biomolecular pleiomorphism probed by spatial interpolation of coarse models by Rusu (2008)
  62. 10.1038/nature02881 / Nature / Structure of the acrosomal bundle by Schmid (2004)
  63. 10.1016/j.str.2007.09.021 / Structure / Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution by Schroder (2007)
  64. 10.1016/j.jsb.2006.08.003 / J. Struct. Biol. / Ab initio resolution measurement for single particle structures by Sousa (2007)
  65. 10.1016/S0968-0004(02)02176-X / Trends Biochem. Sci. / New electron microscopy database and deposition system by Tagari (2002)
  66. 10.1016/j.jsb.2004.03.002 / J. Struct. Biol. / Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM by Tama (2004)
  67. 10.1016/j.jsb.2008.05.001 / J. Struct. Biol. / YUP.SCX: Coaxing atomic models into medium resolution electron density maps by Tan (2008)
  68. 10.1016/S0969-2126(96)00057-3 / Structure / The suitability of multi-metal clusters for phasing in crystallography of large macromolecular assemblies by Thygesen (1996)
  69. 10.1016/j.str.2007.11.016 / Structure / Protein structure fitting and refinement guided by cryo-EM density by Topf (2008)
  70. 10.1016/j.ymeth.2009.04.005 / Methods / Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography by Trabuco (2009)
  71. 10.1107/S0907444910002763 / Acta Crystallogr. D / Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions by Trapani (2010)
  72. 10.1016/j.jmb.2004.12.031 / J. Mol. Biol. / Refined structure of the nicotinic acetylcholine receptor at 4A resolution by Unwin (2005)
  73. 10.1073/pnas.0811370106 / Proc. Natl. Acad. Sci. USA / Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis by Villa (2009)
  74. 10.1038/nature03606 / Nature / Nucleotide-dependent bending flexibility of tubulin regulates microtubule assembly by Wang (2005)
  75. 10.1038/nature08291 / Nature / Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy by Wang (2009)
  76. 10.1006/jsbi.1998.4058 / J. Struct. Biol. / Crystal structure determination of Escherichia coli ClpP starting from an EM-derived mask by Wang (1998)
  77. 10.1016/j.jmb.2006.06.027 / J. Mol. Biol. / The structure of a filamentous bacteriophage by Wang (2006)
  78. 10.1139/O09-164 / Biochem. Cell Biol. / Cryo electron microscopy structures of Hsp100 proteins: Crowbars in or out? by Wendler (2010)
  79. 10.1007/s12551-009-0026-3 / Biophys. Rev. / Using Situs for the integration of multi-resolution structures by Wriggers (2010)
  80. 10.1016/S1097-2765(01)80009-5 / Mol. Cell / The crystal structure of the human hepatitis B virus capsid by Wynne (1999)
  81. 10.1038/sj.emboj.7601386 / EMBO J. / Structural changes of bacteriophage phi29 upon DNA packaging and release by Xiang (2006)
  82. 10.1107/S090744490705398X / Acta Crystallogr. D Biol. Crystallogr. / From electron microscopy to X-ray crystallography: Molecular-replacement case studies by Xiong (2008)
  83. 10.1038/nsb0297-101 / Nat. Struct. Biol. / The RecA hexamer is a structural homologue of ring helicases by Yu (1997)
  84. 10.1038/nsb1001-868 / Nat. Struct. Biol. / Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus by Zhou (2001)
Dates
Type When
Created 14 years, 10 months ago (Oct. 1, 2010, 4:40 a.m.)
Deposited 6 years, 8 months ago (Dec. 7, 2018, 1:26 p.m.)
Indexed 1 year, 5 months ago (March 11, 2024, 7:05 p.m.)
Issued 15 years, 7 months ago (Jan. 1, 2010)
Published 15 years, 7 months ago (Jan. 1, 2010)
Published Print 15 years, 7 months ago (Jan. 1, 2010)
Funders 0

None

@inbook{Lawson_2010, title={Unified Data Resource for Cryo-EM}, ISSN={0076-6879}, url={http://dx.doi.org/10.1016/s0076-6879(10)83004-6}, DOI={10.1016/s0076-6879(10)83004-6}, booktitle={Cryo-EM, Part C: Analyses, Interpretation, and Case studies}, publisher={Elsevier}, author={Lawson, Catherine L.}, year={2010}, pages={73–90} }