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Biophysical Journal (78)
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Svergun, D. I. (1999). Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing. Biophysical Journal, 76(6), 2879–2886.

Authors 1
  1. D.I. Svergun (first)
References 44 Referenced 1,939
  1. 10.1006/jmbi.1997.1271 / J. Mol. Biol. / Pentameric and decameric structures in solution of serum amyloid P component by X-ray and neutron scattering and molecular modelling analyses by Ashton (1997)
  2. 10.1016/S0092-8674(00)81455-5 / Cell / A 9Å resolution X-ray crystallographic map of the large ribosomal subunit by Ban (1998)
  3. 10.1038/nsb0197-20 / Nat. Struct. Biol. / Solution structure of the ribosomal RNA binding protein S15 from Th. thermophilus by Berglund (1997)
  4. 10.1021/bi9802869 / Biochemistry / Solution structure of the ternary complex between aminoacyl-tRNA, elongation factor Tu, and guanosine triphosphate by Bilgin (1998)
  5. 10.1016/S0022-2836(77)80200-3 / J. Mol. Biol. / The Protein Data Bank: a computer-based archival file for macromolecular structures by Bernstein (1977)
  6. 10.1016/0168-9002(86)90694-7 / Nucl. Instrum. Meth. / Data appraisal, evaluation and display for synchrotron radiation experiments: hardware and software by Boulin (1986)
  7. 10.1016/0168-9002(88)90895-9 / Nucl. Instrum. Meth. / Data acquisition systems for linear and area X-ray detectors using delay line readout by Boulin (1988)
  8. 10.1126/science.3317832 / Science / A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli by Capel (1987)
  9. 10.1016/S0006-3495(98)77984-6 / Biophys. J. / Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm by Chacón (1998)
  10. 10.1016/S0969-2126(96)00115-3 / Structure / The crystal structure of ribosomal protein S8: implications for modelling the central domain of 16A rRNA by Davies (1996)
  11. {'key': '10.1016/S0006-3495(99)77443-6_bib11', 'series-title': 'Structure Analysis by Small-Angle X-Ray and Neutron Scattering', 'author': 'Feigin', 'year': '1987'} / Structure Analysis by Small-Angle X-Ray and Neutron Scattering by Feigin (1987)
  12. 10.1038/376441a0 / Nature / A model of protein synthesis based on a new cryo-electron microscopy reconstruction of the E. coli ribosome by Frank (1995)
  13. {'key': '10.1016/S0006-3495(99)77443-6_bib13', 'first-page': '312', 'article-title': 'Evaluation, design and extrapolation methods for optical signals, based on the use of the prolate functions', 'volume': '9', 'author': 'Frieden', 'year': '1971'} / Evaluation, design and extrapolation methods for optical signals, based on the use of the prolate functions by Frieden (1971)
  14. 10.1016/0167-5087(82)90031-X / Nucl. Instrum. Meth. / The localization method used at EMBL by Gabriel (1982)
  15. 10.1287/ijoc.1.3.190 / ORSA J. Comput. / Tabu Search–Part I by Glover (1989)
  16. 10.1016/0895-7177(93)90204-C / Math. Computer Modelling / Simulated annealing: practice versus theory by Ingber (1993)
  17. 10.1126/science.220.4598.671 / Science / Optimization by simulated annealing by Kirkpatrick (1983)
  18. 10.1016/0969-2126(93)90007-4 / Structure / The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation by Kjeldgaard (1993)
  19. 10.1016/0076-6879(79)59121-6 / Meth. Enzymol. / Neutron scattering studies of ribosomes by Koch (1979)
  20. 10.1107/S0021889897001830 / J. Appl. Crystallogr. / ASSA: a program for three-dimensional rendering in solution scattering from biopolymers by Kozin (1997)
  21. 10.1021/bi9702703 / Biochemistry / Structures of calmodulin and a functional myosin light chain kinase in the activated complex: a neutron scattering study by Krueger (1997)
  22. 10.1002/j.1460-2075.1992.tb05060.x / EMBO J. / Inter-protein distances within the large subunit from Escherichia coli ribosomes by May (1992)
  23. 10.1107/S002188988001179X / J. Appl. Cryst / Small-angle scattering. Information content and error analysis by Moore (1980)
  24. {'key': '10.1016/S0006-3495(99)77443-6_bib24', 'series-title': 'Small-Angle X-Ray Scattering', 'first-page': '17', 'article-title': 'General theory', 'author': 'Porod', 'year': '1982'} / Small-Angle X-Ray Scattering / General theory by Porod (1982)
  25. {'key': '10.1016/S0006-3495(99)77443-6_bib25', 'series-title': 'Numerical Recipes', 'author': 'Press', 'year': '1992'} / Numerical Recipes by Press (1992)
  26. 10.1038/358768a0 / Nature / The structure of ribosomal protein S5 reveals 2 sites of interaction with 16S RNA by Ramakrishnan (1992)
  27. 10.1046/j.1432-1327.1998.2530406.x / Eur. J. Biochem. / Studies on the conformational changes in the bacterial cell wall biosynthetic enzyme UDP-N-acetylglucosamine enolpyruvyltransferase (MurA) by Schönbrunn (1998)
  28. {'key': '10.1016/S0006-3495(99)77443-6_bib28', 'series-title': 'The Mathematical Theory of Communication', 'author': 'Shannon', 'year': '1949'} / The Mathematical Theory of Communication by Shannon (1949)
  29. 10.1016/S0969-2126(96)00153-0 / Structure / Structure of UDP-n-Acetylglucosamine enolpyruvyl transferase, an enzyme essential for the synthesis of bacterial peptidoglycan, complexed with substrate UDP-n-Acetylglucosamine and the drug fosfomycin by Skarzynski (1996)
  30. 10.1524/zpch.1970.72.4_6.177 / Zeitschr. Physik. Chem. Neue Folge / Ein neues Verfahren zur Bestimmung der Oberflächenform und der inneren Struktur von gelösten globulären Proteinen aus Röntgenkleinwinkelmessungen by Stuhrmann (1970)
  31. 10.1107/S0567739470000748 / Acta Crystallogr. / Interpretation of small-angle scattering of dilute solutions and gases. A representation of the structures related to a one-particle scattering functions by Stuhrmann (1970)
  32. 10.1524/zpch.1965.46.3_4.247 / Zeitschr. Physik. Chem. Neue Folge / Elimination der intrapartikulären Untergrundstreuung bei der Röntgenkleinwinkelstreuung am kompakten Teilchen (Proteinen) by Stuhrmann (1965)
  33. 10.1107/S0021889892011828 / J. Appl. Crystallogr. / A direct indirect method of small-angle scattering data treatment by Svergun (1993)
  34. 10.1107/S0108767393013492 / Acta Crystallogr. / Solution scattering from biopolymers: advanced contrast variation data analysis by Svergun (1994)
  35. 10.1107/S0108767391006414 / Acta Crystallogr. / New developments in direct shape determination from small-angle scattering. 1. Theory and model calculations by Svergun (1991)
  36. 10.1107/S0021889895007047 / J. Appl. Crystallogr. / CRYSOL: a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates by Svergun (1995)
  37. 10.1107/S0108767396000177 / Acta Crystallogr. / New developments in direct shape determination from small-angle scattering. 2. Uniqueness by Svergun (1996)
  38. 10.1107/S0021889897001714 / J. Appl. Crystallogr. / Shape determination from solution scattering of biopolymers by Svergun (1997)
  39. 10.1006/jmbi.1997.1190 / J. Mol. Biol. / Solution scattering structural analysis of the 70S Escherichia coli ribosome by contrast variation by Svergun (1997)
  40. 10.1016/S0006-3495(98)77665-9 / Biophys. J. / A model of the quaternary structure of the Escherichia coli F1 ATPase from X-ray solution scattering and evidence for structural changes in the δ subunit during ATP hydrolysis by Svergun (1998)
  41. 10.1073/pnas.95.5.2267 / Proc. Natl. Acad. Sci. USA / Protein hydration in solution: experimental observation by X-ray and neutron scattering by Svergun (1998)
  42. 10.1107/S0021889882012011 / J. Appl. Crystallogr. / Informational content and retrieval in solution scattering studies. I. Degrees of freedom and data reduction by Taupin (1982)
  43. 10.1006/jmbi.1994.1190 / J. Mol. Biol. / Crystal structure of Escherichia coli thioredoxin reductase refined at 2 angstrom resolution: implications for a large conformational change during catalysis by Waksman (1994)
  44. 10.1073/pnas.91.15.7242 / Proc. Natl. Acad. Sci. USA / Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimer by Wang (1994)
Dates
Type When
Created 16 years, 7 months ago (Jan. 6, 2009, 7:21 a.m.)
Deposited 6 years, 3 months ago (May 16, 2019, 8:54 p.m.)
Indexed 2 days, 4 hours ago (Aug. 23, 2025, 1:04 a.m.)
Issued 26 years, 2 months ago (June 1, 1999)
Published 26 years, 2 months ago (June 1, 1999)
Published Print 26 years, 2 months ago (June 1, 1999)
Funders 0

None

@article{Svergun_1999, title={Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing}, volume={76}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/s0006-3495(99)77443-6}, DOI={10.1016/s0006-3495(99)77443-6}, number={6}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Svergun, D.I.}, year={1999}, month=jun, pages={2879–2886} }