Crossref
journal-article
Elsevier BV
Biophysical Journal (78)
References
76
Referenced
41
10.1021/bi00232a020
/ Biochemistry / Conformational analysis of the polar head group in phosphatidylcholine bilayers: a structural change induced by cations by Akutsu (1991)10.1111/j.1399-3011.1996.tb00813.x
/ Int. J. Pept. Protein Res. / Dynorphin-phospholipid membrane interactions: role of phospholipid head-group and cholesterol by Alford (1996)10.1248/bpb.22.543
/ Biol. Pharm. Bull. / Effect of a dynorphin A analog, E2078, on phospholipid membrane properties by Asai (1999)10.1063/1.480207
/ J. Chem. Phys. / Melittin at a membrane/water interface: effects on water orientation and water penetration by Bachar (1999)10.1016/S0006-3495(97)78332-2
/ Biophys. J. / Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study by Belohorcova (1997)10.1016/S0006-3495(98)77604-0
/ Biophys. J. / Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane by Berneche (1998)10.1021/bi990923a
/ Biochemistry / The aromatic residues Trp and Phe have different effects on the positioning of a transmembrane helix in the microsomal membrane by Braun (1999)10.1002/jcc.540040211
/ J. Comput. Chem. / CHARMM: a program for macromolecular energy minimization and dynamics calculations by Brooks (1983)10.1073/pnas.90.12.5391
/ Proc. Natl. Acad. Sci. USA. / A brief history of opiates, opioid peptides, and opioid receptors by Brownstein (1993)10.1038/271182a0
/ Nature / Neutron diffraction studies on selectively deuterated phospholipid bilayers by Buldt (1979)10.1016/0022-2836(79)90479-0
/ J. Mol. Biol. / Neutron diffraction studies on phosphatidylcholine model membranes. I. Head group conformation by Buldt (1979)10.1073/pnas.78.10.6543
/ Proc. Natl. Acad. Sci. USA. / Specific receptor for the opioid peptide dynorphin: structure-activity relationships by Chavkin (1981)10.1126/science.6120570
/ Science / Dynorphin is a specific endogenous ligand of the κ opioid receptor by Chavkin (1982)10.1016/S0006-3495(95)80005-6
/ Biophys. J. / Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane by Chiu (1995)10.1016/S0006-3495(99)77082-7
/ Biophys. J. / Combined Monte Carlo and molecular dynamics simulation of fully hydrated dioleoyl and palmitoyl-oleoyl phosphatidylcholine lipid bilayers by Chiu (1999)10.1016/S0006-3495(99)77352-2
/ Biophys. J. / Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. I. Structure of the molecular complex by Chiu (1999)10.1016/S0006-3495(99)77353-4
/ Biophys. J. / Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. II. Rates and mechanisms of water transport by Chiu (1999)10.1038/299079a0
/ Nature / Dynorphin1–8 and dynorphin1–9 are ligands for the κ-subtype of opiate receptor by Corbett (1982)10.1016/0024-3205(75)90272-6
/ Life Sci. / A peptide-like substance from pituitary that acts like morphine. Purification and properties by Cox (1975)10.1016/S0959-440X(94)90220-8
/ Curr. Opin. Struct. Biol. / Solid-state NMR structural studies of peptides and proteins in membranes by Cross (1994){'key': '10.1016/S0006-3495(00)76479-4_bib21', 'series-title': 'Biological Membranes: A Molecular Perspective from Computation and Experiment', 'first-page': '554', 'article-title': 'Bilayer-peptide interactions', 'author': 'Damodaran', 'year': '1996'}
/ Biological Membranes: A Molecular Perspective from Computation and Experiment / Bilayer-peptide interactions by Damodaran (1996)10.1021/bi00337a001
/ Biochemistry / Preferred conformation, orientation, and accumulation of dynorphin-A-(1–13)-tridecapeptide on the surface of neutral lipid membrane by Erne (1985)10.1016/S0006-3495(99)77364-9
/ Biophys. J. / Dynamical properties of phospholipid bilayers from computer simulation by Essmann (1999)10.1093/protein/12.11.927
/ Protein Eng. / 3D modeling, ligand binding and activation studies of the cloned mouse delta, mu and kappa opioid receptors by Filizola (1999)10.1111/j.1476-5381.1988.tb11735.x
/ Br. J. Pharmacol. / N,N-Diallyl-tyrosyl substitution confers antagonist properties on the kappa-selective opioid peptide [D-Pro10]dynorphin A-(1–11) by Gairin (1988){'key': '10.1016/S0006-3495(00)76479-4_bib26', 'series-title': 'Biomembrane: Molecular Structure and Function', 'author': 'Gennis', 'year': '1989'}
/ Biomembrane: Molecular Structure and Function by Gennis (1989)10.1073/pnas.78.11.7219
/ Proc. Natl. Acad. Sci. USA. / Porcine pituitary dynorphin. Complete amino acid sequence of the biologically active heptadecapeptides by Goldstein (1981)10.1016/0003-9861(83)90055-3
/ Arch. Biochem. Biophys. / Head group and structure specific interactions of enkephalins and dynorphin with liposomes: investigation by hydrophobic photolabeling by Gysin (1983)10.1006/jcph.1999.6222
/ J. Comp. Phys. / Molecular dynamics simulation of membranes and a transmembrane helix by Ha Duong (1999)10.1016/S0006-3495(92)81671-5
/ Biophys. J. / Hydration at the membrane protein-lipid interface by Ho (1992)10.1080/07391102.1995.10508789
/ J. Biomol. Struct. Dyn. / Interaction of an amphiphilic peptide with a phospholipid bilayer surface by molecular dynamics simulation study by Huang (1995)10.1021/bi00434a042
/ Biochemistry / The nature of the hydrophobic binding of small peptides at the bilayer interface. Implications for the insertion of transbilayer helices by Jacobs (1989)10.1063/1.445869
/ J. Chem. Phys. / Comparison of simple potential functions for simulating liquid water by Jorgensen (1983)10.1006/jmbi.1999.3322
/ J. Mol. Biol. / Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property by Kovacs (2000)10.1021/bi00233a012
/ Biochemistry / Mimicking the membrane-mediated conformation of dynorphin A-(1–13)-peptide: circular dichroism and nuclear magnetic resonance studies in methanolic solution by Lancaster (1991)10.1016/S0022-2836(83)80007-2
/ J. Mol. Biol. / Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles by Lewis (1983)10.1021/jp973084f
/ J. Phys. Chem. B. / All-atom empirical potential for molecular modeling and dynamics studies of proteins by Mackerell (1998)10.1007/BF02532369
/ Neurochem. Res. / Application of the message-address concept to the docking of naltrexone and selective naltrexone-derived opioid antagonists into opioid receptor models by Metzger (1996)10.1016/0165-6147(90)90321-X
/ Trends Pharmacol. Sci. / κ-Opioid receptors and analgesia by Millan (1990)10.1021/bi00212a022
/ Biochemistry / New evidence for a membrane-bound pathway in hormone receptor binding by Moroder (1993){'key': '10.1016/S0006-3495(00)76479-4_bib41', 'first-page': '1419', 'article-title': 'X-ray structure determination of fully hydrated LSymbol § 12 phase dipalmitoylphosphatidylcholine bilayers', 'volume': '70', 'author': 'Nagle', 'year': '1996', 'journal-title': 'Bio- phys. J.'}
/ Bio- phys. J. / X-ray structure determination of fully hydrated LSymbol § 12 phase dipalmitoylphosphatidylcholine bilayers by Nagle (1996)10.1016/S0040-4020(01)86112-3
/ Tetrahedron / Membrane-assisted receptor subtype selection—synthesis, membrane structure, and opioid receptor affinity of [Phe8,12] dynorphin-(1–13)-tridecapeptide and [Phe8,12,Lys10] dynorphin-(1–13)-tridecapeptide by Nakajima (1988)10.1016/S0196-9781(98)00042-4
/ Peptides / Structure-activity relationship studies of dynorphin A and related peptides by Naqvi (1998)10.1016/S0009-3084(98)00068-1
/ Chem. Phys. Lipids. / Fluid phase structure of EPC and DMPC bilayers by Petrache (1998)10.1007/BF02443468
/ Lett. Pept. Sci. / Computer modeling of delta opioid receptor and interaction with ligands by Poda (1998)10.1016/S0006-291X(88)80496-0
/ Biochem. Biophys. Res. Commun. / Dynorphin A (1–13) peptide NH groups are solvent exposed: FT-IR and 500MHz 1H NMR spectroscopic evidence by Renugopalakrishnan (1988){'key': '10.1016/S0006-3495(00)76479-4_bib47', 'series-title': 'Biological Membranes: A Molecular Perspective from Computation and Experiment', 'first-page': '555', 'article-title': 'Molecular dynamics of Pf1 coat protein in a phospholipid bilayer', 'author': 'Roux', 'year': '1996'}
/ Biological Membranes: A Molecular Perspective from Computation and Experiment / Molecular dynamics of Pf1 coat protein in a phospholipid bilayer by Roux (1996)10.1016/0021-9991(77)90098-5
/ J. Comput. Phys. / Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes by Ryckaert (1977)10.1002/(SICI)1099-1387(199909)5:9<410::AID-PSC216>3.0.CO;2-R
/ J. Pept. Sci. / Solution structure of beta-endorphin in helicogenic solvents: an NMR study by Saviano (1999){'key': '10.1016/S0006-3495(00)76479-4_bib50', 'series-title': 'Biological Membranes: A Molecular Perspective from Computation and Experiment', 'first-page': '31', 'article-title': 'An empirical potential energy function for phospholipids: criteria for parameter optimization and applications', 'author': 'Schlenkrich', 'year': '1996'}
/ Biological Membranes: A Molecular Perspective from Computation and Experiment / An empirical potential energy function for phospholipids: criteria for parameter optimization and applications by Schlenkrich (1996)10.1016/S0006-3495(00)76581-7
/ Biophys. J. / Computer simulation of ion channel gating: the M2 channel of influenza A virus in a lipid bilayer by Schweighofer (2000)10.1021/bi00363a016
/ Biochemistry / Estimated conformation, orientation and accumulation of dynorphin A-(1–13)-tridecapeptide on the surface of neutral lipid membranes by Schwyzer (1986)10.1002/bip.360310624
/ Biopolymers / Peptide-membrane interactions and a new principle in quantitative structure-activity relationships by Schwyzer (1991)10.1002/bip.360370104
/ Biopolym. Pept. Sci. / 100 years lock-and-key concept: are peptide keys shaped and guided to their receptors by the target cell membrane? by Schwyzer (1995){'key': '10.1016/S0006-3495(00)76479-4_bib55', 'first-page': '37', 'article-title': 'Solution conformation of mu-selective dermorphin and delta-selective deltrophin-I in phospholipid micelles, studied by NMR spectroscopy and molecular dynamics simulations', 'volume': '46', 'author': 'Segawa', 'year': '1995', 'journal-title': 'Int. J. Pept. Protein Res.'}
/ Int. J. Pept. Protein Res. / Solution conformation of mu-selective dermorphin and delta-selective deltrophin-I in phospholipid micelles, studied by NMR spectroscopy and molecular dynamics simulations by Segawa (1995)10.1002/prot.340080202
/ Proteins Struct. Funct. Genet. / Amphipathic helix motif: classes and properties by Segrest (1990)10.1016/S0006-3495(97)78042-1
/ Biophys. J. / Transmembrane helix structure, dynamics and interactions: multi-nanosecond molecular dynamics simulations by Shen (1997)10.1016/S0006-3495(00)76616-1
/ Biophys. J. / Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer by Shrivastava (2000)10.1021/jm00101a010
/ J. Med. Chem. / Effect of modification of dynorphin A-(1–13) amide on kappa opioid receptor selectivity and opioid activity by Snyder (1992){'key': '10.1016/S0006-3495(00)76479-4_bib60', 'series-title': 'Opioids in Pain Control: Basic and Clinical Aspects', 'author': 'Stein', 'year': '1999'}
/ Opioids in Pain Control: Basic and Clinical Aspects by Stein (1999)10.1093/protein/10.9.1019
/ Protein Eng. / Comparative modeling and molecular dynamics studies of the δ, κ and μ receptors by Strahs (1997)10.1021/bi961457h
/ Biochemistry / NMR and structural model of dynorphin A (1–17) bound to dodecylphosphocholine micelles by Tessmer (1997)10.1016/S0006-3495(99)77337-6
/ Biophys. J. / An alamethicin channel in a lipid bilayer: molecular dynamics simulations by Tieleman (1999)10.1111/j.1399-3011.1984.tb02732.x
/ Int. J. Pept. Protein Res. / Dynorphin-(1–13) I. Structure-function relationships of Ala-containing analogs by Turcotte (1984)10.1126/science.8211140
/ Science / Molecular dynamics simulations of a lipid bilayer and of hexadecane: an investigation of membrane fluidity by Venable (1993)10.1021/jm970789x
/ J. Med. Chem. / Membrane-induced secondary structures of neuropeptides: a comparison of the solution conformations adopted by agonists and antagonists of the mammalian tachykinin NK1 receptor by Whitehead (1998)10.1016/S0006-3495(92)81849-0
/ Biophys. J. / Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure by Wiener (1992)10.1021/jm9805034
/ J. Med. Chem. / Emerging molecular approaches to pain therapy by Williams (1999)10.1016/S0006-3495(97)78267-5
/ Biophys. J. / Molecular dynamics of individual α-helices of bacteriorhodopsin in dimyristoyl phosphatidylcholine. I. Structure and dynamics by Woolf (1997)10.1002/(SICI)1097-461X(1998)69:1<105::AID-QUA12>3.0.CO;2-5
/ Int. J. Quantum Chem. / Bacteriorhodopsin α-helices in lipid settings: insights for structure prediction by Woolf (1998)10.1016/S0006-3495(98)77773-2
/ Biophys. J. / Molecular dynamics simulations of individual α-helices of bacteriorhodopsin in dimyristoylphosphatidylcholine. II. Interaction energy analysis by Woolf (1998)10.1021/ja00092a048
/ J. Am. Chem. Soc. / The conformational flexibility of o-phosphorylcholine and o-phosphorylethanolamine: a molecular dynamics study of solvation effects by Woolf (1994)10.1002/(SICI)1097-0134(199601)24:1<92::AID-PROT7>3.0.CO;2-Q
/ Proteins Struct. Funct. Genet. / Structure, energetics, and dynamics of lipid-protein interactions: a molecular dynamics study of the gramicidin A channel in a DMPC bilayer by Woolf (1996)10.1016/S0006-3495(99)77284-X
/ Biophys. J. / Molecular dynamics study of substance P peptides in a biphasic membrane mimic by Wymore (1999)10.1016/S0006-3495(99)77285-1
/ Biophys. J. / Molecular dynamics study of substance P peptides in a sodium dodecyl sulfate micelle by Wymore (1999)10.1002/(SICI)1097-0282(199901)49:1<55::AID-BIP6>3.0.CO;2-A
/ Biopolymers / NMR studies of the structure and dynamics of peptide E, an endogenous opioid peptide that binds with high affinity to multiple opioid receptor subtypes by Yan (1999)
Dates
Type | When |
---|---|
Created | 16 years, 7 months ago (Jan. 6, 2009, 7:50 a.m.) |
Deposited | 4 years, 4 months ago (March 24, 2021, 12:49 p.m.) |
Indexed | 1 month, 1 week ago (July 16, 2025, 9:13 a.m.) |
Issued | 24 years, 9 months ago (Nov. 1, 2000) |
Published | 24 years, 9 months ago (Nov. 1, 2000) |
Published Print | 24 years, 9 months ago (Nov. 1, 2000) |
@article{Sankararamakrishnan_2000, title={Molecular Dynamics Simulations Predict a Tilted Orientation for the Helical Region of Dynorphin A(1–17) in Dimyristoylphosphatidylcholine Bilayers}, volume={79}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/s0006-3495(00)76479-4}, DOI={10.1016/s0006-3495(00)76479-4}, number={5}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Sankararamakrishnan, Ramasubbu and Weinstein, Harel}, year={2000}, month=nov, pages={2331–2344} }