DOI: 10.1016/b978-0-12-416026-2.00013-3. Precise, Correlated Fluorescence Microscopy and Electron Tomography of Lowicryl Sections Using Fluorescent Fiducial Markers

10.1016/b978-0-12-416026-2.00013-3

Crossref book-chapter

Elsevier

Methods in Cell Biology (78)

Bibliography

Kukulski, W., Schorb, M., Welsch, S., Picco, A., Kaksonen, M., & Briggs, J. A. G. (2012). Precise, Correlated Fluorescence Microscopy and Electron Tomography of Lowicryl Sections Using Fluorescent Fiducial Markers. Correlative Light and Electron MIcroscopy, 235â257.

Authors 6

Wanda Kukulski (first)
Martin Schorb (additional)
Sonja Welsch (additional)
Andrea Picco (additional)
Marko Kaksonen (additional)
John A.G. Briggs (additional)

References 30 Referenced 141

10.1016/S0959-440X(02)00378-0 / Current Opinion in Structural Biology / Electron tomography: towards visualizing the molecular organization of the cytoplasm by Baumeister (2002)
10.1242/jcs.078519 / Journal of Cell Science / Reassessment of the role of plasma membrane domains in the regulation of vesicular traffic in yeast by Brach (2011)
10.1126/science.1201847 / Science / Cortical constriction during abscission involves helices of ESCRT-III-dependent filaments by Guizetti (2011)
10.1016/j.ceb.2008.12.003 / Current Opinion in Cell Biology / Probing the macromolecular organization of cells by electron tomography by Hoenger (2009)
10.1016/S0091-679X(06)79006-9 / Methods in Cell Biology / Whole-cell investigation of microtubule cytoskeleton architecture by electron tomography by Höög (2007)
10.1016/j.devcel.2007.01.020 / Developmental Cell / Organization of interphase microtubules in fission yeast analyzed by electron tomography by Höög (2007)
10.1242/jcs.072967 / Journal of Cell Science / Electron tomography reveals growing MT ends to have flared morphology by Höög (2010)
10.1042/BC20090096 / Biology of the Cell / A precise and rapid mapping protocol for correlative light and electron microscopy of small invertebrate organisms by Kolotuev (2010)
10.1006/jsbi.1996.0013 / Journal of Structural Biology / Computer visualization of three-dimensional image data using IMOD by Kremer (1996)
10.1083/jcb.201009037 / The Journal of Cell Biology / Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision by Kukulski (2011)
10.1126/science.1082520 / Science / Development and use of fluorescent protein markers in living cells by Lippincott-Schwartz (2003)
10.1016/j.jsb.2005.07.007 / Journal of Structural Biology / Automated electron microscope tomography using robust prediction of specimen movements by Mastronarde (2005)
10.1016/S0091-679X(06)79002-1 / Methods in Cell Biology / Cryopreparation methods for electron microscopy of selected model systems by McDonald (2007)
10.1016/j.neuron.2007.06.014 / Neuron / Array Tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits by Micheva (2007)
10.1016/S0091-679X(06)79004-5 / Methods in Cell Biology / Correlative light and electron microscopy of early Caenorhabditis elegans embryos in mitosis by Müller-Reichert (2007)
10.1111/j.1600-0854.2008.00859.x / Traffic / A single method for cryofixation and correlative light, electron microscopy and tomography of zebrafish embryos by Nixon (2009)
10.1146/annurev.physchem.012809.103444 / Annual Review of Physical Chemistry / Superresolution imaging using single-molecule localization by Patterson (2010)
10.1038/nature05318 / Nature / Centriole assembly in Caenorhabditis elegans by Pelletier (2006)
10.1016/j.jsb.2007.07.011 / Journal of Structural Biology / Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography by Sartori (2007)
10.1111/j.1365-2818.2007.01794.x / Journal of Microscopy / Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching by Schwartz (2007)
10.1038/nmeth819 / Nature Methods / A guide to choosing fluorescent proteins by Shaner (2005)
10.1371/journal.pbio.1001041 / PLoS Biology / A genetically encoded tag for correlated light and electron microscopy of intact cells, tissues, and organisms by Shu (2011)
10.1242/jcs.051227 / Journal of Cell Science / Furrow-like invaginations of the yeast plasma membrane correspond to membrane compartment of Can1 by Stradalova (2009)
10.1016/j.ejcb.2009.07.002 / European Journal of Cell Biology / Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells by van Driel (2009)
10.1038/nmeth.1263 / Nature Methods / Correlative light-electron microscopy (CLEM) combining live-cell imaging and immunolabeling of ultrathin cryosections by van Rijnsoever (2008)
10.1111/j.1365-2818.2008.01989.x / Journal of Microscopy / Moving EM: the Rapid Transfer System as a new tool for correlative light and electron microscopy and high throughput for high-pressure freezing by Verkade (2008)
10.1046/j.1365-2818.2002.01064.x / Journal of Microscopy / Freeze substitution of high-pressure frozen samples: the visibility of biological membranes is improved when the substitution medium contains water by Walther (2002)
10.1038/nature04472 / Nature / Eisosomes mark static sites of endocytosis by Walther (2006)
10.1016/S0091-679X(10)96025-1 / Methods in Cell Biology / Viral infection of cells in culture – approaches for electron microscopy by Walther (2010)
10.1038/nmeth.1537 / Nature Methods / Protein localization in electron micrographs using fluorescence nanoscopy by Watanabe (2011)

Dates

Type	When
Created	13 years ago (July 31, 2012, 7:23 a.m.)
Deposited	6 years, 9 months ago (Nov. 21, 2018, 2:57 p.m.)
Indexed	1 month, 1 week ago (July 14, 2025, 11:43 p.m.)
Issued	13 years, 7 months ago (Jan. 1, 2012)
Published	13 years, 7 months ago (Jan. 1, 2012)
Published Print	13 years, 7 months ago (Jan. 1, 2012)

Funders 0

None

BibTeX

@inbook{Kukulski_2012, title={Precise, Correlated Fluorescence Microscopy and Electron Tomography of Lowicryl Sections Using Fluorescent Fiducial Markers}, ISBN={9780124160262}, ISSN={0091-679X}, url={http://dx.doi.org/10.1016/b978-0-12-416026-2.00013-3}, DOI={10.1016/b978-0-12-416026-2.00013-3}, booktitle={Correlative Light and Electron MIcroscopy}, publisher={Elsevier}, author={Kukulski, Wanda and Schorb, Martin and Welsch, Sonja and Picco, Andrea and Kaksonen, Marko and Briggs, John A.G.}, year={2012}, pages={235–257} }

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