Crossref
journal-article
Springer Science and Business Media LLC
Plant Molecular Biology (297)
Authors
12
- Gustavo Parisi (first)
- Mariano Perales (additional)
- María Fornasari (additional)
- Alejandro Colaneri (additional)
- Nahuel Schain (additional)
- Diego Casati (additional)
- Sabrina Zimmermann (additional)
- Axel Brennicke (additional)
- Alejandro Araya (additional)
- James Ferry (additional)
- Julián Echave (additional)
- Eduardo Zabaleta (additional)
References
66
Referenced
111
-
Adler, L., Brundell, J., Falkbring, S.O. and Nyman, P.O. 1972. Carbonic anhydrase from Neisseria sicca, strain 6021. I. Bacterial growth and purification of the enzyme. Biochim. Biophys. Acta 284: 298–310.
(
10.1016/0005-2744(72)90068-X
) / Biochim. Biophys. Acta by L. Adler (1972) -
Alber, B.E. and Ferry, J.G. 1994. A carbonic anhydrase from the archaeon Methanosarcina thermophila. Proc. Natl. Acad. Sci. USA 91: 6909–6913.
(
10.1073/pnas.91.15.6909
) / Proc. Natl. Acad. Sci. USA by B.E. Alber (1994) -
Alber, B.E. and Ferry, J.G. 1996. Characterization of heterologously produced carbonic anhydrase from Methanosarcina thermophila. J. Bacteriol. 178: 3270–3274.
(
10.1128/jb.178.11.3270-3274.1996
) / J. Bacteriol by B.E. Alber (1996) - Badger, M.R. and Price, G.D. 1994. The role of carbonic anhydrase in photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 45: 369–392. / Plant Mol. Biol by M.R. Badger (1994)
-
Badger, M.R. and Price, G.D. 2003. CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution. J. Exp. Bot. 54: 609–622.
(
10.1093/jxb/erg076
) / J. Exp. Bot by M.R. Badger (2003) -
Becker, D., Kemper, E., Schell, J. and Masterson, R. (1992) New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol. Biol. 20, 1195–1197.
(
10.1007/BF00028908
) / Plant Mol. Biol by D. Becker (1992) -
Boriacksjodin, P.A., Heck, R.W., Laipis, P.J., Silverman, D., and Christianson, D. 1995. Structure determination of murine mitochondrial carbonic-anhydrase-V at 2.45-Angstrom resolution-implications for catalytic proton-transfer and inhibitor design. Proc. Natl. Acad. Sci. USA 92: 10949–10953.
(
10.1073/pnas.92.24.10949
) / Proc. Natl. Acad. Sci. USA by P.A. Boriacksjodin (1995) -
Braus-Stromeyer, S.A., Schnappauf, G., Braus, G., Gossner, A. and Drake, H. 1997. Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria. J. Bacteriol. 179: 7197–200.
(
10.1128/jb.179.22.7197-7200.1997
) / J. Bacteriol by S.A. Braus-Stromeyer (1997) -
Brooks, B.R., Bruccoleri, R., Olafson, B., Swaminathan, S. and Karplis, M. 1983. A program for macromolecular energy, minimization and dynamics calculations. J. Comp. Chem. 4: 105–113.
(
10.1002/jcc.540040211
) / J. Comp. Chem by B.R. Brooks (1983) -
Brown, J. 2001 Genomic and phylogenetic perspectives on the evolution of prokaryotes. Syst. Biol. 50: 497–512.
(
10.1080/10635150117729
) / Syst. Biol by J. Brown (2001) -
Brown, J., Douady, C., Italia, M., Marshall, W. and Stanhope, M. 2001. Universal trees based on large combined protein sequence data sets. Nature Genet. 28: 281–285.
(
10.1038/90129
) / Nature Genet by J. Brown (2001) -
Chirica, L.C., Elleby, B., Jonsson, B. and Lindskog, S. 1997. The complete sequence, expression in Escherichia coli, purification and some properties of carbonic anhydrase from Neisseria gonorrhoeas. Eur. J. Biochem. 244: 755–760.
(
10.1111/j.1432-1033.1997.00755.x
) / Eur. J. Biochem by L.C. Chirica (1997) -
Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735–737.
(
10.1046/j.1365-313x.1998.00343.x
) / Plant J by S.J. Clough (1998) - Cox, E., McLendon, G., Morel, F.M., Lane, T.W., Prince, R.C., Pickering, I.J. and George, G.N. 2000. The active site structure of Thalassiosira weissflogii carbonic anhydrase 1. Biochemistry 2000 39: 12128–12130. / Biochemistry 2000 by E. Cox (2000)
-
Douce, R., Bourguignon, J., Brouquisse, R. and Neuburger, M. 1987. Isolation of plant mitochondria: general principles and criteria of integrity. Methods Enzymol. 148: 403–415.
(
10.1016/0076-6879(87)48039-7
) / Methods Enzymol by R. Douce (1987) -
Echeverria, M., Martin, M.T., Ricard, B. and Litvak, S. 1986. A DNA topoisomerase type I from wheat mitochondria. Plant Mol. Biol. 6, 417–427.
(
10.1007/BF00027134
) / Plant Mol. Biol by M. Echeverria (1986) -
Eriksson, M., Karlsson, K., Ramazanov, Z., Gardestrom, G. and Samuelsson, G. 1996. Discovery of an algal mitochondrial carbonic anhydrase: molecular cloning and characterization of a low-CO2-induced polypeptide in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 93: 12031–12034.
(
10.1073/pnas.93.21.12031
) / Proc. Natl. Acad. Sci. USA by M. Eriksson (1996) -
Eubel, H., Jansch, L. and Braun, H.-P. 2003. New insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II. Plant Physiol. 133: 274–286.
(
10.1104/pp.103.024620
) / Plant Physiol by H. Eubel (2003) -
Farré, J.C. and Araya, A. 2001. Gene expression in isolated plant mitochondria: high fidelity of transcription, splicing and editing of a transgene product in electroporated organelles. Nucl. Acids Res. 29: 2484–2491.
(
10.1093/nar/29.12.2484
) / Nucl. Acids Res by J.C. Farré (2001) - Felsenstein, J. (1993). PHYLIP (Phytogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seatle. / PHYLIP (Phytogeny Inference Package) version 3.5c by J. Felsenstein (1993)
-
Figueroa, P., Gómez, I., Holuigue, L., Araya, A. and Jordana, X. 1999. Transfer of rps14 from the mitochondrion to the nucleus in maize implied integration within a gene encoding the iron-sulfur subunit of succinate dehydrogenase and expression by alternative splicing. Plant J. 18: 601–609.
(
10.1046/j.1365-313x.1999.00485.x
) / Plant J by P. Figueroa (1999) -
Fukuzawa, H., Fujiwara, S., Yamamoto, Y., Dionisio-Sese, M. and Miyachi, S. 1990. cDNA cloning, sequence, and expression of carbonic anhydrase in Chlamydomonas reinhardtii: regulation by environmental CO2 concentration. Proc. Natl. Acad. Sci. USA 87: 4383–4387.
(
10.1073/pnas.87.11.4383
) / Proc. Natl. Acad. Sci. USA by H. Fukuzawa (1990) -
González-Meler, M.A., Rubas-Carbo, M., Siedow, J. and Drake, B.G. 1996. Direct inhibition of plant mitochondrial respiration by elevated CO2. Plant Physiol. 112: 1349–1355.
(
10.1104/pp.112.3.1349
) / Plant Physiol by M.A. González-Meler (1996) -
Gray, M.W., Burger, G. and Lang, B.F. 1999. Mitochondrial evolution. Science 283: 1476–1481.
(
10.1126/science.283.5407.1476
) / Science by M.W. Gray (1999) -
Guilloton, M.B., Korte, J., Lamblin, A., Fuchs, J. and Anderson, P. 1992. Carbonic anhydrase in Escherichia coli. A product of the cyn operon. J. Biol. Chem. 267: 3731–3734.
(
10.1016/S0021-9258(19)50586-5
) / J. Biol. Chem by M.B. Guilloton (1992) -
Heazlewood, J.L., Howell, K. and Millar, A.M. 2003. Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plantspecific subunits. Biochim. Biophys. Acta. 1604: 159–169.
(
10.1016/S0005-2728(03)00045-8
) / Biochim. Biophys. Acta by J.L. Heazlewood (2003) -
Henrick, K. and Thornton, J.M. 1998. PQS: a protein quaternary structure file server. Trends Biochem. Sci. 23: 358–361.
(
10.1016/S0968-0004(98)01253-5
) / Trends Biochem. Sci by K. Henrick (1998) -
Henry, R.P. 1996. Multiple roles of carbonic anhydrase in cellular transport and metabolism. Annu. Rev. Physiol. 58: 523–538.
(
10.1146/annurev.ph.58.030196.002515
) / Annu. Rev. Physiol by R.P. Henry (1996) -
Hewett-Emmett, D. and Tashian, R.E. 1996. Functional diversity, conservation, and convergence in the evolution of the alpha-, beta-, and gamma-carbonic anhydrase gene families. Mol. Phylogenet. Evol. 5: 50–77.
(
10.1006/mpev.1996.0006
) / Mol. Phylogenet. Evol by D. Hewett-Emmett (1996) -
Hewett-Emmett, D. 2000. Evolution and distribution of the carbonic anhydrase gene families. In: W.R. Chegwidden, N.D. Carter and Y.H. Edwards (Eds.) The Carbonic Anhdyrases. New Horizons, Birkha¨ user Verlag, Basel, pp. 29–76.
(
10.1007/978-3-0348-8446-4_3
) / The Carbonic Anhdyrases by D. Hewett-Emmett (2000) -
Iverson, T.M., Alber, B.E., Kisker, C., Ferry, J.G. and Rees, D.C. 2000. A closer look at the active site of gammaclass carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila. Biochemistry 39: 9222–9231.
(
10.1021/bi000204s
) / Biochemistry by T.M. Iverson (2000) -
Kaplan, A. and Reinhold, L. 1999. CO2 concentrating mechanisms in photosynthetic microorganisms. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 539–570.
(
10.1146/annurev.arplant.50.1.539
) / Annu. Rev. Plant Physiol. Plant Mol. Biol by A. Kaplan (1999) -
Kisker, C., Schindelin, H., Alber, B.E., Ferry, J.G. and Rees, D.C. 1996. A left-hand beta-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila. EMBO J. 15: 2323–2330.
(
10.1002/j.1460-2075.1996.tb00588.x
) / EMBO J by C. Kisker (1996) -
Laemmli, Y.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophacie T4. Nature 227: 680–685.
(
10.1038/227680a0
) / Nature by Y.K. Laemmli (1970) -
Lane, T.W. and Morel, F.M. 2000. A biological function for cadmium in marine diatoms. Proc. Natl. Acad. Sci. USA 97: 4627–4631.
(
10.1073/pnas.090091397
) / Proc. Natl. Acad. Sci. USA by T.W. Lane (2000) -
Lesburg, C.A., Huang, C.C., Christianson, D. and Fierke, C.A. 1997. Histidine carboxamide ligand substitutions in the zinc binding site of carbonic anhydrase II alter metal coordination geometry but retain catalytic activity. Biochemistry 36: 15780–15791.
(
10.1021/bi971296x
) / Biochemistry by C.A. Lesburg (1997) -
Li, W., Jaroszewski, L. and Godzik, A. 2002. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 15: 643–649.
(
10.1093/protein/15.8.643
) / Protein Eng by W. Li (2002) -
Maeda, S., Badger, M.R. and Price, G.D. 2002. Novel gene products associated with NdhD3/D4-containing NDH-1 complexes are involved in photosynthetic CO2 hydration in the cyanobacterium, Synechococcus sp. PCC7942. Mol. Microbiol 43: 425–435.
(
10.1046/j.1365-2958.2002.02753.x
) / Mol. Microbiol by S. Maeda (2002) - Mathur, J. and Koncz, C. 1998. Protoplast isolation, culture, and regeneration. Methods Mol. Biol. 82: 35–42. / Methods Mol. Biol by J. Mathur (1998)
-
Meldrum, N.U. and Roughton, F.J. 1933. Carbonic anhydrase: its preparation and properties. J. Physiol. 80: 113–141.
(
10.1113/jphysiol.1933.sp003077
) / J. Physiol by N.U. Meldrum (1933) -
Meller, J. and Elber, R. 2001. Linear programming optimization and a double statistical filter for protein threading protocols. Proteins 45: 241–261.
(
10.1002/prot.1145
) / Proteins by J. Meller (2001) -
Merlin, C., Masters, M., McAteer, S. and Coulson, A. 2003. Why is carbonic anhydrase essential to Escherichia coli? J. Bacteriol. 185: 6415–6424.
(
10.1128/JB.185.21.6415-6424.2003
) / J. Bacteriol by C. Merlin (2003) -
Millar, A.H., Sweetlove, L.J., Giegé, P. and Leaver, C.L. 2001. Analysis of the Arabidopsis mitochondrial proteome. Plant Physiol. 127: 1711–1727.
(
10.1104/pp.010387
) / Plant Physiol by A.H. Millar (2001) -
Mori, K., Ogawa, Y., Ebihara, K., Tamura, N., Tashiro, K., Kuwahara, T., Mukoyama, M., Sugawara, A., Ozaki, S., Tanaka, I. and Nakao, K. 1999. Isolation and characterization of CA XIV, a novel membrane-bound carbonic anhydrase from mouse kidney. J. Biol. Chem. 274: 15701–15705.
(
10.1074/jbc.274.22.15701
) / J. Biol. Chem. by K. Mori (1999) -
Moroney, J.V., Bartlett, S.G., and Samuelsson, G. (2001). Carbonic anhydrases in plants and algae. Plant Cell Environ. 24: 141–153.
(
10.1111/j.1365-3040.2001.00669.x
) / Plant Cell Environ by J.V. Moroney (2001) -
Parisi, G. and Echave, J. 2001. Structural constraints and emergence of sequence patterns in protein evolution. Mol. Biol. Evol. 18: 750–756.
(
10.1093/oxfordjournals.molbev.a003857
) / Mol. Biol. Evol by G. Parisi (2001) -
Parisi, G., Fornasari, M. and Echave, J. 2000. Evolutionary analysis of gamma-carbonic anhydrase structurally related proteins. Mol. Phylogenet. Evol. 14: 323–334.
(
10.1006/mpev.1999.0734
) / Mol. Phylogenet. Evol by G. Parisi (2000) -
Price, G.D., Hewit, S.M., Harrison, K. and Badger, M.R. 1993. Analysis of genomic DNA region from the cyanobacteria Synechococcus sp. strain PCC7942 involved in carboxysome assembly and function. J. Bacteriol. 175: 2871–2879.
(
10.1128/jb.175.10.2871-2879.1993
) / J. Bacteriol by G.D. Price (1993) -
Qian, M., Earnhardt, J., Wadhwa, N., Tu, C., Laipis, P. and Silverman, D. 1999. Proton transfer to residues of basic pK(a) during catalysis by carbonic anhydrase. Biochim. Biophys. Acta. 1434: 1–5.
(
10.1016/S0167-4838(99)00170-3
) / Biochim. Biophys. Acta by M. Qian (1999) -
Raetz, C.R. and Roderick, S.L. 1995. A left-handed parallel beta helix in the structure of UDP-N-acetylglucosamine acyltransferase. Science 270: 997–1000.
(
10.1126/science.270.5238.997
) / Science by C.R. Raetz (1995) -
Raven, J.A. 2001. A role for mitochondrial carbonic anhydrase in limiting CO2 leakage from low CO2-grown cells of Chlamydomonas reinhardtii. Plant Cell Environ. 24: 261–264.
(
10.1111/j.1365-3040.2001.00662.x
) / Plant Cell Environ. by J.A. Raven (2001) -
Sali, A. and Blundell, T.L. 1993. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234: 779–815.
(
10.1006/jmbi.1993.1626
) / J. Mol. Biol by A. Sali (1993) - Sambrook, J. and Russell, D. 2001. Molecular Cloning, a Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York. / Molecular Cloning, a Laboratory Manual by J. Sambrook (2001)
-
Sanchez, R. and Sali, A. 1998. Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc. Natl. Acad. Sci. USA 95: 13597–13602.
(
10.1073/pnas.95.23.13597
) / Proc. Natl. Acad. Sci. USA by R. Sanchez (1998) -
Shi, J., Blundell, T.L. and Mizuguchi, K. 2001. FUGUE: sequence-structure homology recognition using environmentspecific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310: 243–257.
(
10.1006/jmbi.2001.4762
) / J. Mol. Biol by J. Shi (2001) -
Sippl, M.J. 1993. Recognition of errors in three-dimensional structures of proteins. Proteins 17: 355–362.
(
10.1002/prot.340170404
) / Proteins by M.J. Sippl (1993) -
Smith, K., Jakubzick, S.C., Whittam, T.S. and Ferry, J.G. 1999. Carbonic anhydrase is an ancient enzyme widespread in prokaryotes. Proc. Natl. Acad. Sci. USA. 96: 15184–15189.
(
10.1073/pnas.96.26.15184
) / Proc. Natl. Acad. Sci. USA. by K. Smith (1999) -
Thompson, J.D., Gibson, T.D., Plewniak, F., Jeanmougin, F. and Higgins, D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids. Res. 25: 4876–4882.
(
10.1093/nar/25.24.4876
) / Nucl. Acids. Res by J.D. Thompson (1997) -
Tripp, B.C. and Ferry, J.G. 2000. A structure-function study of a proton transport pathway in the gamma-class carbonic anhydrase from Methanosarcina thermophila. Biochemistry 39: 9232–9240.
(
10.1021/bi0001877
) / Biochemistry by B.C. Tripp (2000) -
Tripp, B., Bell, C., Cruz, F., Krebs, C. and Ferry, J.G. 2004. A role for iron in an ancient carbonic anhydrase. J. Biol. Chem. 279: 6683–6687.
(
10.1074/jbc.M311648200
) / J. Biol. Chem by B. Tripp (2004) -
Tu, C.K., Rowlett, R., Tripp, B.C., Ferry, J.G. and Silverman, D.N. 2002. Chemical rescue of proton transfer in catalysis by carbonic anhydrases in the beta-and gamma-class. Biochemistry 41: 15429–15435.
(
10.1021/bi026831u
) / Biochemistry by C.K. Tu (2002) -
Vaara, M. 1992. Eight bacterial proteins, including UDP-Nacetylglucosamine acyltransferase (LpxA) and three other transferases of Escherichia coli, consist of a six-residue periodicity theme. FEMS Microbiol Lett. 76: 249–254.
(
10.1111/j.1574-6968.1992.tb05471.x
) / FEMS Microbiol Lett by M. Vaara (1992) -
Veitch, F.P. and Blankenship, L.C. 1963. Carbonic anhydrase in bacteria. Nature 197: 76–77.
(
10.1038/197076a0
) / Nature by F.P. Veitch (1963) - Yagawa, Y., Shiraiwa, Y. and Miyachi, S. 1984. Plant Cell Physiol 25: 775–783. / Plant Cell Physiol by Y. Yagawa (1984)
- Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555–556. / Comput. Appl. Biosci by Z. Yang (1997)
-
Zabaleta, E., Heiser V., Grohmann, L. and Brennicke, A. 1998. Promoters of nuclear-encoded respiratory chain complex I genes from Arabidopsis thaliana contain a region essential for anther/pollen specific expression. Plant J. 15: 49–59.
(
10.1046/j.1365-313X.1998.00177.x
) / Plant J by E. Zabaleta (1998)
Dates
Type | When |
---|---|
Created | 20 years, 10 months ago (Oct. 25, 2004, 9:06 p.m.) |
Deposited | 4 years, 2 months ago (June 26, 2021, 7 p.m.) |
Indexed | 2 months, 1 week ago (June 19, 2025, 7:45 a.m.) |
Issued | 21 years, 3 months ago (May 1, 2004) |
Published | 21 years, 3 months ago (May 1, 2004) |
Published Print | 21 years, 3 months ago (May 1, 2004) |
@article{Parisi_2004, title={Gamma carbonic anhydrases in plant mitochondria}, volume={55}, ISSN={1573-5028}, url={http://dx.doi.org/10.1007/s11103-004-0149-7}, DOI={10.1007/s11103-004-0149-7}, number={2}, journal={Plant Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Parisi, Gustavo and Perales, Mariano and Fornasari, María and Colaneri, Alejandro and Schain, Nahuel and Casati, Diego and Zimmermann, Sabrina and Brennicke, Axel and Araya, Alejandro and Ferry, James and Echave, Julián and Zabaleta, Eduardo}, year={2004}, month=may, pages={193–207} }