Crossref journal-article
Springer Science and Business Media LLC
Journal of Molecular Modeling (297)
Bibliography

Chen, J., Zhang, S., Liu, X., & Zhang, Q. (2009). Insights into drug resistance of mutations D30N and I50V to HIV-1 protease inhibitor TMC-114: Free energy calculation and molecular dynamic simulation. Journal of Molecular Modeling, 16(3), 459–468.

Authors 4
  1. Jianzhong Chen (first)
  2. Shaolong Zhang (additional)
  3. Xinguo Liu (additional)
  4. Qinggang Zhang (additional)
References 42 Referenced 32
  1. Navia MA, Fitzgerald PMD, Mckeever BM, Leu CT, Heimbach JC, Herber WK, Sigal IS, Darke PL Springer JP (1989) Nature 337:615–620 / J P Springer Nature by MA Navia (1989)
  2. Perryman AL, Lin JH, Andrew McCammon J (2006) Biopolymers 82:272–284 (10.1002/bip.20497) / Biopolymers by AL Perryman (2006)
  3. Roberts NA, Martin JA, Kinchington D, Broadhurst AV, Craig JC, Duncan IB, Galpin SA, Handa BK, Kay J, Krohn A et al (1990) Science 248:358–361 (10.1126/science.2183354) / Science by NA Roberts (1990)
  4. Kempf DJ, Marsh KC, Denissen JF, McDonald E, Vasavanonda S, Flentge CA, Green BE, Park FL, CH KXP et al (1995) Proc Natl Acad Sci USA 92:2484–2488 (10.1073/pnas.92.7.2484) / Proc Natl Acad Sci USA by DJ Kempf (1995)
  5. Vacca JP, Dorsey BD, Schleif WA, Levin RB, McDAniel SL, Darke PL, Zugay J, Quintero JC, Blahy OM, Roth E et al (1994) Proc Natl Acad Sci USA 91:4096–4100 (10.1073/pnas.91.9.4096) / Proc Natl Acad Sci USA by JP Vacca (1994)
  6. Kalish V, Kaldor S, Shetty B, Tatlock B, Davies J, Hammond M, Dressman B, Fritz J, Appelt K, Keich S, Su K (1995) Eur J Med Chem 30:201s–214s (10.1016/S0223-5234(23)00125-3) / Eur J Med Chem by V Kalish (1995)
  7. Reddy P, Ross J (1999) Formular 18:567–577 / Formular by P Reddy (1999)
  8. Sham HL, Kempf DJ, Molla A, Marsh K, Kumar GN, Chen CM, Kati W, Stewart K, Lal R, Hsu A (1998) Antimicrob Agents Chemother 42:3218–3224 (10.1128/AAC.42.12.3218) / Antimicrob Agents Chemother by HL Sham (1998)
  9. Bold G, Fassler A, Capraro HG, Cozens R, Klimkait T, Lazdins J, Mestan J, Poncioni B, Rosel J, Stover D, Tintelnot-Blomley M, Acemoglu F, Beck W, Boss E, Eschbach M, Hurlimann T, Masso E, Roussel S, Ucci-Stoll K, Wyss D, Lang M (1998) J Med Chem 41:3387–3401 (10.1021/jm970873c) / J Med Chem by G Bold (1998)
  10. Sommadossi JP (1998) Antivir Ther 3:9–12 / Antivir Ther by JP Sommadossi (1998)
  11. Flexner C (1998) N Engl J Med 338:1281–1292 (10.1056/NEJM199804303381808) / N Engl J Med by C Flexner (1998)
  12. Moyle G (2002) AIDS Patient Care STDS 16:585–597 (10.1089/108729102761882125) / AIDS Patient Care STDS by G Moyle (2002)
  13. Hertogs K, Bloor S, Kemp SD, Van den Eynde C, Alcorn TM, Pauwels R, Van Houtte M, Staszewski S, Miller V, Larder BA (2000) AIDS 14:1203–1210 (10.1097/00002030-200006160-00018) / AIDS by K Hertogs (2000)
  14. Wu TD, Schiffer CA, Gonzales MJ, Taylor J, Kantor R, Chou S, Israelski D, Zolopa AR, Fessel WJ, Shafer RW (2003) J Virol 77:4836–4847 (10.1128/JVI.77.8.4836-4847.2003) / J Virol by TD Wu (2003)
  15. Ohtaka H, Freire E (2005) Prog Biophys Mol Biol 88:193–208 (10.1016/j.pbiomolbio.2004.07.005) / Prog Biophys Mol Biol by H Ohtaka (2005)
  16. Tie Y, Boross PI, Wang Y-F, Gaddis L, Hussain AK, Leshchenko S, Ghosh AK, Louis JM, Harrison RW, Weber IT (2004) J Mol Biol 338:341–352 (10.1016/j.jmb.2004.02.052) / J Mol Biol by Y Tie (2004)
  17. Kovalevsky AY, Tie Y, Liu F, Boross PI, Wang YF, Leshchenko S, Ghosh AK, Harrison RW, Weber IT (2006) J Med Chem 49:1379–1387 (10.1021/jm050943c) / J Med Chem by AY Kovalevsky (2006)
  18. Nivesanond K, Peeters A, Lamoen D, Alsenoy CV (2008) J Chem Inf Model 48:99–108 (10.1021/ci7001318) / J Chem Inf Model by K Nivesanond (2008)
  19. Jarvis B, Faulds D (1998) Drugs 56:147–167 (10.2165/00003495-199856010-00013) / Drugs by B Jarvis (1998)
  20. Wu EL, Han KL, Zhang JZH (2008) Chem Eur J 14:8704–8714 (10.1002/chem.200800277) / Chem Eur J by EL Wu (2008)
  21. Hou T, Zhang W, Case DA, Wang W (2008) J Mol Biol 76:1201–1214 (10.1016/j.jmb.2007.12.054) / J Mol Biol by T Hou (2008)
  22. Wu EL, Mei Y, Han KL, Zhang JZH (2007) Biophys J 92:4244–4253 (10.1529/biophysj.106.099150) / Biophys J by EL Wu (2007)
  23. Xu Y, Wang R (2006) PROTEINS 64:1058–1068 (10.1002/prot.21044) / PROTEINS by Y Xu (2006)
  24. Strockbine B, Rizzo RC (2007) PROTEINS 67:630–642 (10.1002/prot.21301) / PROTEINS by B Strockbine (2007)
  25. Zou H, Luo C, Zheng S, Luo X, Zhu W, Chen K, Shen J, Jiang H (2007) J Phys Chem B 111:9104–9113 (10.1021/jp0713763) / J Phys Chem B by H Zou (2007)
  26. Wang W, Kollman PA (2001) PNAS 26:14939–14942 / PNAS by W Wang (2001)
  27. Wang J, Morin P, Wang W, Kollman PA (2001) J Am Chem Soc 123:5221–5230 (10.1021/ja003834q) / J Am Chem Soc by J Wang (2001)
  28. Srinivasan J, Millar J, Kollman PA, Case DA (1998) J Biomol Struct Dyn 16:265–280 (10.1080/07391102.1998.10508279) / J Biomol Struct Dyn by J Srinivasan (1998)
  29. Gohlke H, Kiel C, Case DA (2003) J Mol Biol 330:891–913 (10.1016/S0022-2836(03)00610-7) / J Mol Biol by H Gohlke (2003)
  30. Hyland LJ, Tomaszek TA, Meek TD (1991) Biochem-US 30:8454–8463 (10.1021/bi00098a024) / Biochem-US by LJ Hyland (1991)
  31. Hou T, Mclaughlin WA, Wang W (2008) PROTEINS 71:1163–1174 (10.1002/prot.21808) / PROTEINS by T Hou (2008)
  32. Hou T, Yu R (2007) J Med Chem 50:1177–1188 (10.1021/jm0609162) / J Med Chem by T Hou (2007)
  33. Case DA, Darden TA, Cheatham TE III, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Pearlman DA, Crowley M, Walker RC, Zhang W, Wang B, Hayik S, Roitberg A, Seabra G, Wong KF, Paesani F, Wu X, Brozell S, Tsui V, Gohlke H, Yang L, Tan C, Mongan J, Hornak V, Cui G, Beroza P, Mathews DH, Schafmeister C, Ross WS, Kollman PA (2006) AMBER 9. University California, San Francisco / AMBER 9 by DA Case (2006)
  34. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Zakrzewski VG, Montgomery JA, Stratmann RE, Burant JC, Dapprich S, Millam JM, Daniels AD, Kudin KN, Strain MC, Farkas O, Tomasi J, Barone V, Cossi M, Cammi R, Mennucci B, Pomelli C, Adamo C, Clifford S, Ochterski JW, Petersson GA, Ayala PY, Cui Q, Morokuma K, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Cioslowski J, Ortiz JV, Baboul AG, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Gomperts R, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Gonzalez C, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Andres JL, Gonzalez C, Head-Gordon M, Replogle ES, Pople JA (1998) Gaussian 98. Gaussian Inc, Pittsburgh, PA / Gaussian 98 by MJ Frisch (1998)
  35. Bayly CI, Cieplak P, Cornell WD, Kollman PA (1995) J Phys Chem 97:1367–1377 / J Phys Chem by CI Bayly (1995)
  36. Wang JM, Gieplak P, Kollman PA (2000) J Comput Chem 21:1049–1074 (10.1002/1096-987X(200009)21:12<1049::AID-JCC3>3.0.CO;2-F) / J Comput Chem by JM Wang (2000)
  37. Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1998) J Chem Phys 79:926–935 (10.1063/1.445869) / J Chem Phys by WL Jorgensen (1998)
  38. Darden T, York D, Pedersen L (1993) J Chem Phys 98:10089–10092 (10.1063/1.464397) / J Chem Phys by T Darden (1993)
  39. Ryckaert JP, Ciccotti G, Berendsen HJC (1977) J Comput Phys 23:327–341 (10.1016/0021-9991(77)90098-5) / J Comput Phys by JP Ryckaert (1977)
  40. Sanner MF, Olson AJ, Spehner J (1996) Biopolymers 38:305–320 (10.1002/(SICI)1097-0282(199603)38:3<305::AID-BIP4>3.0.CO;2-Y) / Biopolymers by MF Sanner (1996)
  41. Lepsík M, Kríz Z, Havlas Z (2004) PROTEINS 57:279–293 (10.1002/prot.20192) / PROTEINS by M Lepsík (2004)
  42. Onufriev A, Bashford D, Case DA (2000) J Phys Chem 104:3712–3720 (10.1021/jp994072s) / J Phys Chem by A Onufriev (2000)
Dates
Type When
Created 16 years ago (July 22, 2009, 9:48 p.m.)
Deposited 2 years, 2 months ago (May 25, 2023, 11:16 p.m.)
Indexed 1 year, 2 months ago (May 31, 2024, 12:32 a.m.)
Issued 16 years ago (July 24, 2009)
Published 16 years ago (July 24, 2009)
Published Online 16 years ago (July 24, 2009)
Published Print 15 years, 5 months ago (March 1, 2010)
Funders 0

None

@article{Chen_2009, title={Insights into drug resistance of mutations D30N and I50V to HIV-1 protease inhibitor TMC-114: Free energy calculation and molecular dynamic simulation}, volume={16}, ISSN={0948-5023}, url={http://dx.doi.org/10.1007/s00894-009-0553-7}, DOI={10.1007/s00894-009-0553-7}, number={3}, journal={Journal of Molecular Modeling}, publisher={Springer Science and Business Media LLC}, author={Chen, Jianzhong and Zhang, Shaolong and Liu, Xinguo and Zhang, Qinggang}, year={2009}, month=jul, pages={459–468} }