DOI: 10.1007/bf02458836. The alignment of protein structures in three dimensions

The alignment of protein structures in three dimensions

10.1007/bf02458836

Crossref journal-article

Springer Science and Business Media LLC

Bulletin of Mathematical Biology (297)

Bibliography

Zuker, M., & Somorjai, R. L. (1989). The alignment of protein structures in three dimensions. Bulletin of Mathematical Biology, 51(1), 55â78.

Authors 2

M. Zuker (first)
R. L. Somorjai (additional)

References 28 Referenced 44

Altschul, S. F. and B. W. Erickson. 1986. “Optimal Sequence Alignment using Affine Gap Costs.”Bull. Math. Biol. 48, 603–616. (10.1007/BF02462326) / Bull. Math. Biol. by S. F. Altschul (1986)
Blumenthal, L. M. 1953.Theory and Application of Distance Geometry. Oxford: Clarendon Press. / Theory and Application of Distance Geometry by L. M. Blumenthal (1953)
Claverie, J. M. and I. Sauvaget. 1985. “A New Protein Sequence Databank.”Nature 318, 19. (10.1038/318019a0) / Nature by J. M. Claverie (1985)
Cohen, F. E. and M. J. E. Sternberg. 1980. “On the Prediction of Protein Structure: The Significance of the Root-Mean-Square Deviation.”J. Molec. Biol. 138, 321–333. (10.1016/0022-2836(80)90289-2) / J. Molec. Biol. by F. E. Cohen (1980)
Cornish-Bowden, A. 1980. “Critical Values for Testing the Significance of Amino Acid Composition Indexes.”Anal. Biochem. 105, 233–238. (10.1016/0003-2697(80)90450-9) / Anal. Biochem. by A. Cornish-Bowden (1980)
Coulson, A. F. W., J. F. Collins and A. Lyall. 1987. “Protein and Nucleic Acid Sequence Database Searching: A Suitable Case for Parallel Processing.”Comput. J. 30, 420–424. (10.1093/comjnl/30.5.420) / Comput. J. by A. F. W. Coulson (1987)
Dayhoff, M. O., R. M. Schwartz and B. C. Orcutt. 1978. “A Model of Evolutionary Change in Proteins.” InAtlas of Protein Sequence and Structure, Vol. 5, Suppl. 3. 345–352. Washington: National Biomedical Research Foundation. / Atlas of Protein Sequence and Structure by M. O. Dayhoff (1978)
Diamond, R. 1987. “A Note on the Rotational Superposition Problem.”Acta Cryst. A44, 211–216. / Acta Cryst. by R. Diamond (1987)
Evans, D. J. 1977. “On the Representation of Orientation Space.”Molec. Phys. 34, 317–325. (10.1080/00268977700101751) / Molec. Phys. by D. J. Evans (1977)
Fitch, W. M. and T. F. Smith. 1983. “Optimal Sequence Alignments.”Proc. Natn. Acad. Sci. U.S.A. 80, 1382–1386. (10.1073/pnas.80.5.1382) / Proc. Natn. Acad. Sci. U.S.A. by W. M. Fitch (1983)
Goldstein, H. 1965.Classical Mechanics, Reading, MA: Addison-Wesley. / Classical Mechanics by H. Goldstein (1965)
Levitt, M. 1976. “A Simplified Representation of Protein Conformations for Rapid Simulation of Protein Folding.”J. Molec. Biol. 104, 59–107. (10.1016/0022-2836(76)90004-8) / J. Molec. Biol. by M. Levitt (1976)
Lipman, D. J. and W. R. Pearson. 1985. “Rapid and Sensitive Protein Similarity Searches.”Science 227, 1435–1441. (10.1126/science.2983426) / Science by D. J. Lipman (1985)
Louie, A. H. and R. L. Somorjai. “Differential Geometry of Proteins: A Morphological Metric for Structural Comparisons.” (To be submitted.)
Maizel, J. V. and R. P. Lenk. 1981. “Enhanced Graphic Matrix Analysis of Nucleic Acid and Protein Sequences.”Proc. Natn. Acad. Sci. U.S.A. 78, 7665–7669. (10.1073/pnas.78.12.7665) / Proc. Natn. Acad. Sci. U.S.A. by J. V. Maizel (1981)
McLachlan, A. D. 1979. “Gene Duplications in the Structural Evolution of Chymotrypsin.”J. Molec. Biol. 128, 49–79. (10.1016/0022-2836(79)90308-5) / J. Molec. Biol. by A. D. McLachlan (1979)
— 1984. “How Alike are the Shapes of Two Random Chains?”Biopolymers 23, 1325–1331. (10.1002/bip.360230716) / Biopolymers by A. D. McLachlan (1984)
Needleman, S. B. and C. D. Wunsch. 1970. “A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins.”J. Molec. Biol. 48, 443–453. (10.1016/0022-2836(70)90057-4) / J. Molec. Biol. by S. B. Needleman (1970)
Remington, S. J. and B. W. Matthews. 1978. “A General Method to Assess Similarity of Protein Structures, with Applications to T4 Bacteriophage Lysozyme.”Proc. Natn. Acad. Sci. U.S.A. 75, 2180–2184. (10.1073/pnas.75.5.2180) / Proc. Natn. Acad. Sci. U.S.A. by S. J. Remington (1978)
Rossmann, M. G. and P. Argos. 1976. “Exploring Structural Homology of Proteins.”J. Molec. Biol. 105, 75–95. (10.1016/0022-2836(76)90195-9) / J. Molec. Biol. by M. G. Rossmann (1976)
Schulz, G. E. 1977. “Recognition of Phylogenetic Relationships from Polypeptide Chain Fold Similarities.”J. Molec. Evol. 9, 339–342. (10.1007/BF01796096) / J. Molec. Evol. by G. E. Schulz (1977)
Sellers, P. H. 1974. “An Algorithm for the Distance Between Two Finite Sequences.”J. Combinatorial Theory 16A, 253–258. (10.1016/0097-3165(74)90050-8) / J. Combinatorial Theory by P. H. Sellers (1974)
Sippl, M. J. 1982. “On the Problem of Comparing Protein Structures. Development and Applications of a New Method for the Assessment of Structural Similarities of Polypeptide Conformations.”J. Molec. Biol. 156, 359–388. (10.1016/0022-2836(82)90334-5) / J. Molec. Biol. by M. J. Sippl (1982)
Smith, T. F., M. S. Waterman and W. M. Fitch. 1981. “Comparative Biosequence Metrics.”J. Molec. Evol. 18, 38–46. (10.1007/BF01733210) / J. Molec. Evol. by T. F. Smith (1981)
Stuart, D. I., K. R. Acharya, N. P. C. Walker, S. G. Smith, M. Lewis and D. C. Phillips. 1986. “α-Lactalbumin Possesses a Novel, Calcium Binding Loop.”Nature 324, 84–87. (10.1038/324084a0) / Nature by D. I. Stuart (1986)
Waterman, M. S. 1984. “General Methods of Sequence Comparison.”Bull Math. Biol. 46, 473–500. (10.1007/BF02459498) / Bull Math. Biol. by M. S. Waterman (1984)
Weaver, L. H., M. G. Gruetter, S. J. Remington, T. M. Gray, N. W. Isaacs and B. W. Matthews. 1985. “Comparison of Goose-Type, Chicken-Type, and Phage-Type Lysozymes Illustrates the Changes that Occur in Both Amino Acid Sequence and Three-Dimensional Structure during Evolution.”J. Molec. Evol. 21, 97–111. (10.1007/BF02100084) / J. Molec. Evol. by L. H. Weaver (1985)
Wilkinson, J. H. 1960. “Householder's Method for the Solution of the Algebraic Eigenproblem.”Comput. J. 3, 23–27. (10.1093/comjnl/3.1.23) / Comput. J. by J. H. Wilkinson (1960)

Dates

Type	When
Created	19 years ago (July 30, 2006, 8:30 p.m.)
Deposited	6 years, 3 months ago (May 17, 2019, 12:14 p.m.)
Indexed	1 year, 6 months ago (Feb. 23, 2024, 1:26 p.m.)
Issued	36 years, 7 months ago (Jan. 1, 1989)
Published	36 years, 7 months ago (Jan. 1, 1989)
Published Print	36 years, 7 months ago (Jan. 1, 1989)

Funders 0

None

BibTeX

@article{Zuker_1989, title={The alignment of protein structures in three dimensions}, volume={51}, ISSN={1522-9602}, url={http://dx.doi.org/10.1007/bf02458836}, DOI={10.1007/bf02458836}, number={1}, journal={Bulletin of Mathematical Biology}, publisher={Springer Science and Business Media LLC}, author={Zuker, M. and Somorjai, R. L.}, year={1989}, month=jan, pages={55–78} }

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    "date-time": "2019-05-17T16:14:19Z",
    "timestamp": 1558109659000
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  "score": 1,
  "resource": {
    "primary": {
      "URL": "http://link.springer.com/10.1007/BF02458836"
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  "relation": {},
  "ISSN": [
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    "1522-9602"
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  "subject": [],
  "container-title-short": "Bltn Mathcal Biology",
  "published": {
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  }
}