Positive and negative transcriptional regulation by the yeast GAL11 protein depends on the structure of the promoter and a combination of cis elements
10.1007/bf00290110
Crossref journal-article
Springer Science and Business Media LLC
Molecular and General Genetics MGG (297)
Bibliography

Nishizawa, M., Taga, S., & Matsubara, A. (1994). Positive and negative transcriptional regulation by the yeast GAL11 protein depends on the structure of the promoter and a combination of cis elements. Molecular and General Genetics MGG, 245(3), 301–312.

Authors 3
  1. Masafumi Nishizawa (first)
  2. Seiko Taga (additional)
  3. Aki Matsubara (additional)
References 61 Referenced 15
  1. Abrams E, Neigeborn L, Carlson M (1986) Molecular analysis of SNF2 and SNF5, genes required for expression of glucose-repressible genes in Saccharomyces cerevisiae. Mol Cell Biol 6:3643–3651 (10.1128/MCB.6.11.3643) / Mol Cell Biol by E Abrams (1986)
  2. Ammerer G (1990) Identification, purification, and cloning of a polypeptide (PRTF/GRM) that binds to mating-specific promoter elements in yeast. Genes Dev 4:299–312 (10.1101/gad.4.2.299) / Genes Dev by G Ammerer (1990)
  3. Baker HV (1991) GCR1 of Saccharomyces cerevisiae encodes a DNA binding protein whose binding is abolished by mutations in the CTTCC sequence motif. Proc Natl Acad Sci USA 88:9443–9447 (10.1073/pnas.88.21.9443) / Proc Natl Acad Sci USA by HV Baker (1991)
  4. Berger SL, Cress WD, Cress A, Triezenberg SJ, Guarente L (1990) Selective inhibition of activated but not basal transcription by the acid activation domain of VP16: evidence for transcriptional adaptors. Cell 61:1199–1208 (10.1016/0092-8674(90)90684-7) / Cell by SL Berger (1990)
  5. Bram RJ, Lue NF, Kornberg RD (1986) A GAL family of upstream activating sequences in yeast: roles in both induction and repression of transcription. EMBO J 5:603–608 (10.1002/j.1460-2075.1986.tb04253.x) / EMBO J by RJ Bram (1986)
  6. Buchman AR, Lue NF, Kornberg RD (1988) Connection between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein. Mol Cell Biol 8:5086–5099 (10.1128/MCB.8.12.5086) / Mol Cell Biol by AR Buchman (1988)
  7. Chasman DI, Leatherwood J, Carey M, Ptashne M, Kornberg RD (1989) Activation of yeast polymerase II transcription by herpesvirus VP16 and GAL4 derivatives in vitro. Mol Cell Biol 9:4746–4749 (10.1128/MCB.9.11.4746) / Mol Cell Biol by DI Chasman (1989)
  8. Chasman DI, Lue NF, Buchman AR, LaPointe JW, Lorch Y, Kornberg RD (1990) A yeast protein that influences the chromatin structure of UASG and functions as a powerful auxiliary gene activator. Genes Dev 4:503–514 (10.1101/gad.4.4.503) / Genes Dev by DI Chasman (1990)
  9. Chen S, West Jr RW, Johnson SL, Gans H, Kruger B, Ma J (1993) TSF3, a global regulatory protein that silences transcription of yeast GAL genes, also mediates repression by a2 repressor and is identical to SIN4. Mol Cell Biol 13:831–840 (10.1128/MCB.13.2.831) / Mol Cell Biol by S Chen (1993)
  10. Cress WD, Triezenberg SJ (1990) Critical structural elements of the VP16 transcriptional activation domain. Science 251:87–90 (10.1126/science.1846049) / Science by WD Cress (1990)
  11. Croston GE, Laybourn PJ, Paranjape SM, Kadonaga JT (1992) Mechanism of transcriptional antirepression by GAL4-VP16. Genes Dev 6:2270–2281 (10.1101/gad.6.12a.2270) / Genes Dev by GE Croston (1992)
  12. Elble R, Tye B-K (1991) Both activation and repression of a-mating-type-specific genes in yeast require transcription factor Mcm1. Proc Natl Acad Sci USA 88:10966–10970 (10.1073/pnas.88.23.10966) / Proc Natl Acad Sci USA by R Elble (1991)
  13. Errede B (1993) MCM1 binds to a transcriptional control element in Ty1. Mol Cell Biol 13:57–62 (10.1128/MCB.13.1.57) / Mol Cell Biol by B Errede (1993)
  14. Fassler JS, Winston F (1988). Isolation and analysis of a novel class of suppressor of Ty insertion mutants in Saccharomyces cerevisiae. Genetics 118:203–212 (10.1093/genetics/118.2.203) / Genetics by JS Fassler (1988)
  15. Fassler JS, Winston F (1989) The Saccharomyces cerevisiae SPT13/GAL11 gene has both positive and negative regulatory roles in transcription. Mol Cell Biol 9:5602–5609 (10.1128/MCB.9.12.5602) / Mol Cell Biol by JS Fassler (1989)
  16. Felsenfeld G (1992) Chromatin as an essential part of the transcription mechanism. Nature 355:219–224 (10.1038/355219a0) / Nature by G Felsenfeld (1992)
  17. Flanagan PM, Kelleher RJ III, Sayre MH, Tschochner H, Kornberg RD (1991) A mediator required for activation of RNA polymerase II in vitro. Nature 350:436–438 (10.1038/350436a0) / Nature by PM Flanagan (1991)
  18. Guarente L (1983) Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast. Methods Enzymol 101:181–191 (10.1016/0076-6879(83)01013-7) / Methods Enzymol by L Guarente (1983)
  19. Himmelfarb HL, Pearlberg J, Last DH, Ptashne M (1990) GAL11P: a yeast mutation that potentiates the effect of weak GAL4-derived activators. Cell 63:1299–1309 (10.1016/0092-8674(90)90425-E) / Cell by HL Himmelfarb (1990)
  20. Hirschhorn JN, Brown SA, Clark CD, Winston F (1992) Evidence that SNF2/SWI2 and SNF5, activate transcription in yeast by altering chromatin structure. Genes Dev 6:2288–2298 (10.1101/gad.6.12a.2288) / Genes Dev by JN Hirschhorn (1992)
  21. Jiang YW, Stillman DJ (1992) Involvement of the SIN4 global transcriptional regulator in the chromatin structure of Saccharomyces cerevisiae. Mol Cell Biol 12:4503–4514 (10.1128/MCB.12.10.4503) / Mol Cell Biol by YW Jiang (1992)
  22. Johnston M, Dover J (1988) Mutational analysis of the GAL4-encoded transcriptional activator protein of Saccharomyces cerevisiae. Genetics 120:63–74 (10.1093/genetics/120.1.63) / Genetics by M Johnston (1988)
  23. Ju Q, Morrow BE, Warner JW (1990) REB1, a yeast DNA-binding protein with many targets, is essential for cell growth and bears some resemblance to the oncogene myb. Mol Cell Biol 10:5226–5234 (10.1128/MCB.10.10.5226) / Mol Cell Biol by Q Ju (1990)
  24. Kim UJ, Han M, Kayne P, Grunstein M (1988) Effects of histone H4 depletion on the cell cycle and transcription of Saccharomyces cerevisiae. EMBO J 7:2211–2219 (10.1002/j.1460-2075.1988.tb03060.x) / EMBO J by UJ Kim (1988)
  25. Kornberg RD, Lorch Y (1991) Irreversible force meets immovable object: Transcription and the nucleosome. Cell 67:833–836 (10.1016/0092-8674(91)90354-2) / Cell by RD Kornberg (1991)
  26. Laurent BC, Carlson M (1992) Yeast SNF2/SWI2, SNF5, and SNF6 proteins function coordinately with the gene specific transcriptional activators GAL4 and bicoid. Genes Dev 6:1707–1715 (10.1101/gad.6.9.1707) / Genes Dev by BC Laurent (1992)
  27. Laurent BC, Treitel MA, Carlson M (1991) Functional interdependence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation. Proc Natl Acad Sci USA 88:2687–2691 (10.1073/pnas.88.7.2687) / Proc Natl Acad Sci USA by BC Laurent (1991)
  28. Lewin B (1990) Commitment and activation at poIII promoters. Cell 61:1161–1164 (10.1016/0092-8674(90)90675-5) / Cell by B Lewin (1990)
  29. Li WZ, Sherman F (1991) Two types of TATA elements for the CYC1 gene of the yeast Saccharomyces cerevisiae. Mol Cell Biol 11:666–676 (10.1128/MCB.11.2.666) / Mol Cell Biol by WZ Li (1991)
  30. Liljestrom PL (1985) The nucleotide sequence of the yeast MEL1 gene. Nucleic Acids Res 13:7257–7268 (10.1093/nar/13.20.7257) / Nucleic Acids Res by PL Liljestrom (1985)
  31. Lorch Y, LaPointe JW, Kornberg RD (1992) Initiation on chromatin templates in a yeast RNA polymerase II transcription system. Genes Dev 6:2282–2287 (10.1101/gad.6.12a.2282) / Genes Dev by Y Lorch (1992)
  32. McNeil JB, Smith M (1986) Transcription initiation of the Saccharomyces cerevisiae iso-1-cytochrome c gene multiple, independent TATA sequences. J Mol Biol 187:363–378 (10.1016/0022-2836(86)90439-0) / J Mol Biol by JB McNeil (1986)
  33. McNeil JB, Dykshoorn P, Huy JN, Small S (1990) The DNA-binding protein RAP1 is required for efficient transcriptional activation of the yeast PYK glycolytic gene. Curr Genet 18:405–412 (10.1007/BF00309909) / Curr Genet by JB McNeil (1990)
  34. Mylin LM, Gerardot CJ, Hopper JE, Dickson RC (1991) Sequence conservation in the Saccharomyces GAL11 transcription activators suggests functional domains. Nucleic Acids Res 19:5345–5350 (10.1093/nar/19.19.5345) / Nucleic Acids Res by LM Mylin (1991)
  35. Nishizawa M, Araki R, Teranishi Y (1989) Identification of an upstream activating sequence and an upstream repressible sequence of the pyruvate kinase gene of the yeast Saccharomyces cerevisiae. Mol Cell Biol 9:442–451 (10.1128/MCB.9.2.442) / Mol Cell Biol by M Nishizawa (1989)
  36. Nishizawa M, Suzuki Y, Nogi Y, Matsumoto K, Fukasawa T (1990) Yeast Gal11 protein mediates the transcriptional activation signal of two different transacting factors, Gal4 and general regulatory factor I/repressor/activator site binding protein 1/translation upstream factor. Proc Natl Acad Sci USA 87:5373–5377 (10.1073/pnas.87.14.5373) / Proc Natl Acad Sci USA by M Nishizawa (1990)
  37. Nishizawa M, Suzuki Y, Nogi Y, Matsumoto K, Fukasawa T (1993) Yeast Gal11 protein mediates the transcriptional activation signal of two different transacting factors, Ga14 and general regulatory factor I/repressor/activator binding protein t/translation upstream factor (Correction). Proc Natl Acad Sci USA 90:362 (10.1073/pnas.90.1.362-a) / Proc Natl Acad Sci USA by M Nishizawa (1993)
  38. Nogi Y, Fukasawa T (1983) A novel mutation that affects utilization of galactose in Saccharomyces cerevisiae. Curr Genet 2:115–120 (10.1007/BF00420623) / Curr Genet by Y Nogi (1983)
  39. Passmore S, Elble R, Tye B-K (1989) A protein involved in minichromosome maintenance in yeast binds a transcriptional enhancer conserved in eukaryotes. Genes Dev 3:921–935 (10.1101/gad.3.7.921) / Genes Dev by S Passmore (1989)
  40. Peck LJ, Wang JC (1983) Energetics of B-to-Z transition in DNA. Proc Natl Acad Sci USA 80:6206–6210 (10.1073/pnas.80.20.6206) / Proc Natl Acad Sci USA by LJ Peck (1983)
  41. Peterson CL, Herskowitz I (1992) Characterization of the yeast SW11, SW12 and SW13 genes, which encode a global transcriptional activator of transcription. Cell 68:573–583 (10.1016/0092-8674(92)90192-F) / Cell by CL Peterson (1992)
  42. Pugh BF, Tjian R (1990) Mechanism of transcriptional activation by Spl: evidence of coactivators. Cell 61:1187–1197 (10.1016/0092-8674(90)90683-6) / Cell by BF Pugh (1990)
  43. Rothstein RJ (1983) One-step gene disruption in yeast. Methods Enzymol 101: 202–210 (10.1016/0076-6879(83)01015-0) / Methods Enzymol by RJ Rothstein (1983)
  44. Sakurai H, Hiraoka Y, Fukasawa T (1993) Yeast GAL11 protein is a distinctive type transcription factor that enhances basal transcription in vitro. Proc Natl Acad Sci USA 90:8382–8386 (10.1073/pnas.90.18.8382) / Proc Natl Acad Sci USA by H Sakurai (1993)
  45. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York / Molecular cloning, a laboratory manual by J Sambrook (1989)
  46. Scott EW, Baker HV (1993) Concerted action of the transcriptional activators REB1, RAPT, and GCR1 in the high level expression of the glycolytic gene TPI. Mol Cell Biol 13:543–550 (10.1128/MCB.13.1.543) / Mol Cell Biol by EW Scott (1993)
  47. Sherman F, Fink GR, Hicks JB (1986) Laboratory course manual for methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York / Laboratory course manual for methods in yeast genetics by F Sherman (1986)
  48. Shore D, Nasmyth K (1987) Purification and cloning of a DNA-binding protein that binds to both silencer and activator elements. Cell 51:7231–732 (10.1016/0092-8674(87)90095-X) / Cell by D Shore (1987)
  49. Shure M, Pulleyblank DE, Vinograd J (1977) The problems of eukaryotic and prokaryotic DNA packaging and in vivo conformation posed by superhelix density heterogeneity. Nucleic Acids Res 4:1183–1205 (10.1093/nar/4.5.1183) / Nucleic Acids Res by M Shure (1977)
  50. Studier FW, Rosenberg AH, Dunn JJ, Dubendorf JW (1990) Use of T7 RNA polymerase to direct the expression of cloned genes. Methods Enzymol 185:60–89 (10.1016/0076-6879(90)85008-C) / Methods Enzymol by FW Studier (1990)
  51. Suzuki Y, Nishizawa M (1994) The yeast GAL11 protein is involved in the regulation of the structure and the position effect of telomeres. Mol Cell Biol 14:3791–3799 (10.1128/MCB.14.6.3791) / Mol Cell Biol by Y Suzuki (1994)
  52. Suzuki Y, Nogi Y, Abe A, Fukasawa T (1988) GAL11 protein, an auxiliary transcription activator for genes encoding galactosemetabolizing enzymes in Saccharomyces cerevisiae. Mol Cell Biol 8:4991–4999 (10.1128/MCB.8.11.4991) / Mol Cell Biol by Y Suzuki (1988)
  53. Suzuki Y, Nogi Y, Abe A, Fukasawa T (1992) GAL11 protein, an auxiliary transcription activator for genes encoding galactosemetabolizing enzymes in Saccharomyces cerevisiae (Erratum) Mol Cell Biol 12:4806 (10.1128/MCB.12.10.4806) / Mol Cell Biol by Y Suzuki (1992)
  54. Tajima M, Nogi Y, Fukasawa T (1986) Duplicate upstream activating sequences in the promoter region of the Saccharomyces cerevisiae GAL7 gene. Mol Cell Biol 6:246–256 (10.1128/MCB.6.1.246) / Mol Cell Biol by M Tajima (1986)
  55. Turcotte B, Guarente L (1992) HAP1 positive control mutants specific for one of two binding sites. Genes Dev 6:2001–2009 (10.1101/gad.6.10.2001) / Genes Dev by B Turcotte (1992)
  56. Vallier LG, Carlson M (1991) New SNF genes, GAL11 and GRR1 affect SUC2 expression in Saccharomyces cerevisiae. Genetics 129:675–684 (10.1093/genetics/129.3.675) / Genetics by LG Vallier (1991)
  57. Weinzierl R, Dynlacht BD, Tjian R (1993) Largest subunit of Drosophila transcription factor III) directs assembly of a complex containing TBP and a coactivator. Nature 362:511–517 (10.1038/362511a0) / Nature by R Weinzierl (1993)
  58. Winston F, Carlson M (1992) Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet 8:387–391 (10.1016/0168-9525(92)90167-3) / Trends Genet by F Winston (1992)
  59. Workman JL, Taylor ICA, Kingston RE (1991) Activation domains of stably bound GAL4 derivatives alleviate repression of promoters by nucleosomes. Cell 64:533–544 (10.1016/0092-8674(91)90237-S) / Cell by JL Workman (1991)
  60. Yu G, Fassler J (1993) SPT13 (GAL11) of Saccharomyces cerevisiae negatively regulates activity of the MCM1 transcription factor in Ty1 elements. Mol Cell Biol 13:63–71 (10.1128/MCB.13.1.63) / Mol Cell Biol by G Yu (1993)
  61. Zhang-Keck Z-Y, Kibbe WA, Moye-Rowley WS, Parker CS (1991) The SV40 core sequence functions as a repressor element in yeast. J Biol Chem 266:21362–21367 (10.1016/S0021-9258(18)54645-7) / J Biol Chem by Z-Y Zhang-Keck (1991)
Dates
Type When
Created 20 years, 10 months ago (Oct. 5, 2004, 1:50 a.m.)
Deposited 4 years, 1 month ago (June 26, 2021, 1:34 a.m.)
Indexed 1 year, 3 months ago (May 8, 2024, 1:59 p.m.)
Issued 31 years, 3 months ago (May 1, 1994)
Published 31 years, 3 months ago (May 1, 1994)
Published Print 31 years, 3 months ago (May 1, 1994)
Funders 0

None

@article{Nishizawa_1994, title={Positive and negative transcriptional regulation by the yeast GAL11 protein depends on the structure of the promoter and a combination of cis elements}, volume={245}, ISSN={1432-1874}, url={http://dx.doi.org/10.1007/bf00290110}, DOI={10.1007/bf00290110}, number={3}, journal={Molecular and General Genetics MGG}, publisher={Springer Science and Business Media LLC}, author={Nishizawa, Masafumi and Taga, Seiko and Matsubara, Aki}, year={1994}, month=may, pages={301–312} }