The chloroplast genome
10.1007/bf00015612
Crossref journal-article
Springer Science and Business Media LLC
Plant Molecular Biology (297)
Bibliography

Sugiura, M. (1992). The chloroplast genome. Plant Molecular Biology, 19(1), 149–168.

Authors 1
  1. Masahiro Sugiura (first)
References 128 Referenced 450
  1. Alt J, Morris J, Westhoff P, Herrmann RG: Nucleotide sequence of the clustered genes for the 44 kd chlorophyll a apoprotein and the ?32 kd?-like protein of the photosystem II reaction center in the spinach plastid chromosome. Curr Genet 8: 597?606 (1984). (10.1007/BF00395705) / Curr Genet by J Alt (1984)
  2. Barkan A: Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic mRNAs. EMBO J 7: 2637?2644 (1988). (10.1002/j.1460-2075.1988.tb03116.x) / EMBO J by A Barkan (1988)
  3. Bedbrook JR, Bogorad L: Endonuclease recognition sites mapped on Zea mays chloroplast DNA. Proc Natl Acad Sci USA 73: 4309?4319 (1976). (10.1073/pnas.73.12.4309) / Proc Natl Acad Sci USA by JR Bedbrook (1976)
  4. Bedbrook JR, Kolodner R: The structure of chloroplast DNA. Annu Rev Plant Physiol 30: 593?620 (1979). (10.1146/annurev.pp.30.060179.003113) / Annu Rev Plant Physiol by JR Bedbrook (1979)
  5. Bedbrook JR, Kolodner R, Bogorad L: Zea mays chloroplast ribosomal RNA genes are part of a 22,000 base pair inverted repeat. Cell 11: 739?749 (1977). (10.1016/0092-8674(77)90288-4) / Cell by JR Bedbrook (1977)
  6. Bennett DC, Rogers SA, Chen LJ, OrozcoJr EM: A primary transcript in spinach chloroplasts that completely lacks a 5? untranslated leader region. Plant Mol Biol 15: 111?119 (1990). (10.1007/BF00017728) / Plant Mol Biol by DC Bennett (1990)
  7. Berends T, Gamble PE, Mullet JE: Characterization of the barley chloroplast transcription units containing psaA-psaB and psbD-psbC. Nucl Acids Res 15: 5217?5240 (1987). (10.1093/nar/15.13.5217) / Nucl Acids Res by T Berends (1987)
  8. Bird CR, Koller B, Auffret AD, Huttly AK, Howe CJ, Dyer TA, Gray JC: The wheat chloroplast gene for CF0 subunit I of ATP synthase contains a large intron. EMBO J 4: 1381?1388 (1985). (10.1002/j.1460-2075.1985.tb03790.x) / EMBO J by CR Bird (1985)
  9. Blowers AD, Ellmore GS, Klein U, Bogorad L: Transcriptional analysis of Endogenous and foreign genes in chloroplast transformants of Chlamydomonas. Plant Cell 2: 1059?1070 (1990). (10.1105/tpc.2.11.1059) / Plant Cell by AD Blowers (1990)
  10. Bogorad L, Vasil IK (eds): The Molecular Biology of Plastids. Academic Press, San Diego (1991). / The Molecular Biology of Plastids (1991)
  11. Bonnard G, Michel F, Weil JH, Steinmetz A: Nucleotide sequence of the split tRNA-Leu (UAA) gene from Vicia faba chloroplasts: evidence for structural homologies of the chloroplast tRNA-Leu intron with the intron from the autosplicable Tetrahymena ribosomal RNA precursor. Mol Gen Genet 194: 330?336 (1984). (10.1007/BF00383536) / Mol Gen Genet by G Bonnard (1984)
  12. Bowman CM, Dyer TA: 4.5S ribonucleic acid, a novel ribosome component in the chloroplasts of flowering plants. Biochem J 183: 605?613 (1979). (10.1042/bj1830605) / Biochem J by CM Bowman (1979)
  13. Boynton JE, Gillham NW, Harris EH, Hosler JP, Johnson AM, Jones AR, Randolph-Anderson BL, Robertson D, Klein TM, Shark KB, Sanford JC: Chloroplast transformation in Chlamydomonas with high velocity microprojectills. Science 240: 1534?1538 (1988). (10.1126/science.2897716) / Science by JE Boynton (1988)
  14. Bülow S, Link G: Sigma-like activity from mustard (Sinapis alba L.) chloroplasts conferring DNA-binding and transcription specificity to E. coli core RNA polymerase. Plant Mol Biol 10: 349?357 (1988). (10.1007/BF00029885) / Plant Mol Biol by S Bülow (1988)
  15. Choquet Y, Goldschmidt-Clermont M, Girard-Bascou J, Küch U, Bennoun P, Rochaix JD: Mutant phenotypes support a trans-splicing mechanism for the expression of the tripartite psaA gene in the C. reinhardtii chloroplast. Cell 52: 903?913 (1988). (10.1016/0092-8674(88)90432-1) / Cell by Y Choquet (1988)
  16. Christopher DA, Hallick RB: Euglena gracilis chloroplast ribosomal protein operon: a new chloroplast gene for ribosomal protein L5 and description of a novel organelle intron category designated group III. Nucl Acids Res 17: 7591?7607 (1989). (10.1093/nar/17.19.7591) / Nucl Acids Res by DA Christopher (1989)
  17. Christopher DA, Hallick RB: Complex RNA maturation pathway for a chloroplast ribosomal protein operon with an internal tRNA cistron. Plant Cell 2: 659?671 (1990). (10.1105/tpc.2.7.659) / Plant Cell by DA Christopher (1990)
  18. Chun EHL, Vaugham MH, Rich A: The isolation and characterization of DNA associated with chloroplast preparations. J Mol Biol 7: 130?141 (1963). (10.1016/S0022-2836(63)80042-X) / J Mol Biol by EHL Chun (1963)
  19. Delp G, Igloi GL, Kössel H: Identification of in vivo processing intermediates and of splice junctions of tRNAs from maize chloroplasts by amplification with the polymerase chain reaction. Nucl Acids Res 19: 713?716 (1991). (10.1093/nar/19.4.713) / Nucl Acids Res by G Delp (1991)
  20. Deng XW, Wing RA, Gruissem W: The chloroplast genome exists in multimeric forms. Proc Natl Acad Sci USA 86: 4156?4160 (1989). (10.1073/pnas.86.11.4156) / Proc Natl Acad Sci USA by XW Deng (1989)
  21. Deno H and Sugiura M: Chloroplast tRNA-Gly gene contains a long intron in the D stem: nucleotide sequences of tobacco chloroplast genes for tRNA-Gly (UCC) and tRNA-Arg(UCU). Proc Natl Acad Sci USA 81: 405?408 (1984). (10.1073/pnas.81.2.405) / Proc Natl Acad Sci USA by H Deno (1984)
  22. Douglas SE (1991): Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas ?: evolutionary considerations. Curr Genet 19: 289?294 (1991). (10.1007/BF00355057) / Curr Genet by SE Douglas (1991)
  23. Driesel AJ, Crouse EJ, Gordon K, Bohnert HJ, Herrmann RG, Steinmetz A, Mubumbila M, Keller M, Burkard G, Weil JH: Fractionation and identification of spinach chloroplast transfer RNAs and mapping of their genes on the restriction map of chloroplast DNA. Gene 6: 285?306 (1979). (10.1016/0378-1119(79)90070-2) / Gene by AJ Driesel (1979)
  24. Dyer TA: The chloroplast genome: its nature and role in development. In: Baker NR, Barber J (eds) Chloroplast Biogenesis, pp. 23?69. Elsevier, Amsterdam (1984). / Chloroplast Biogenesis by TA Dyer (1984)
  25. Eisermann A, Tiller K, Link G: In vitro transcription and DNA binding characteristics of chloroplast and etioplast extracts from mustard (Sinapis alba) indicate differential usage of the psbA promoter. EMBO J 9: 2981?3987 (1990). (10.1002/j.1460-2075.1990.tb07619.x) / EMBO J by A Eisermann (1990)
  26. Ellis RJ: Chloroplast proteins: synthesis, transport and assembly. Annu Rev Plant Physiol 32: 111?137 (1981). (10.1146/annurev.pp.32.060181.000551) / Annu Rev Plant Physiol by RJ Ellis (1981)
  27. Eneas-Filho J, Hartley MR, Mache R: Pea chloroplast ribosomal proteins: Characterization and site of synthesis. Mol Gen Genet 184: 484?488 (1981). (10.1007/BF00352527) / Mol Gen Genet by J Eneas-Filho (1981)
  28. Fish LE, Bogorad L. Identification and analysis of the maize P700 chlorophyll a proteins of PSI-A1 and PSI-A2 by high pressure liquid chromatography analysis and partial sequence determination. J Biol Chem 261: 8134?8139 (1986). (10.1016/S0021-9258(19)83887-5) / J Biol Chem by LE Fish (1986)
  29. Fish LE, Kück U, Bogorad L: Two partially homologous adjacent light-inducible maize chloroplast genes encoding polypeptides of the P700 chlorophyll a-protein complex of photosystem I. J Biol Chem 260: 1413?1421 (1985). (10.1016/S0021-9258(18)89607-7) / J Biol Chem by LE Fish (1985)
  30. Gamble PE, Mullet JE: Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts. EMBO J 8: 2785?2794 (1989). (10.1002/j.1460-2075.1989.tb08424.x) / EMBO J by PE Gamble (1989)
  31. Gamble PE, Sexton TB, Mullet J: Light-dependent changes in psbD and psbC transcripts of barley chloroplasts: accumulation of two transcripts maintains psbD and psbC translation capability in mature chloroplasts. EMBO J 7: 1289?1297 (1988). (10.1002/j.1460-2075.1988.tb02943.x) / EMBO J by PE Gamble (1988)
  32. Gantt JS: Nucleotide sequences of cDNAs encoding four complete nuclear-encoded plastid ribosomal proteins. Curr Genet 14: 519?528 (1988). (10.1007/BF00521278) / Curr Genet by JS Gantt (1988)
  33. Gillham NW, Harris EH, Randolph-Anderson BL, Boynton JE, Hauser CR, McElwain KB, Newman SM: Molecular genetics of chloroplast ribosomes in Chlamydomonas. In: Mache R, Stutz E, Subramanian AR (eds) The Translational Apparatus of Photosynthetic Organelles, pp. 127?144. Springer-Verlag, Berlin (1991). (10.1007/978-3-642-75145-5_11) / The Translational Apparatus of Photosynthetic Organelles by NW Gillham (1991)
  34. Goldschmidt-Clermont M, Choquet Y, Girard-Bascou J, Michel F, Schirmer-Rahire M, Rochaix JD. A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii. Cell 65: 135?143 (1991). (10.1016/0092-8674(91)90415-U) / Cell by M Goldschmidt-Clermont (1991)
  35. Graf L, Kössel H, Stutz E: Sequencing of 16S-23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes. Nature 286: 908?910 (1980). (10.1038/286908a0) / Nature by L Graf (1980)
  36. Gray JC: Genetics and synthesis of chloroplast membrane proteins in Photosynthesis. In: Amesz J (ed) Photosynthesis, pp. 319?342. Elsevier, Amsterdam (1987). (10.1016/S0167-7306(08)60145-3) / Photosynthesis by JC Gray (1987)
  37. Gray JC, Hird SM, Dyer TA: Nucleotide sequence of a wheat chloroplast gene encoding the proteolytic subunit of an ATP-dependent protease. Plant Mol Biol 15: 947?950 (1990). (10.1007/BF00039435) / Plant Mol Biol by JC Gray (1990)
  38. Gray PW, Hallick RB: Physical mapping of the Euglena gracilis chloroplast DNA and ribosomal RNA gene region. Biochem 17: 284?289 (1978). (10.1021/bi00595a015) / Biochem by PW Gray (1978)
  39. Greenberg BM, Gruissem W, Hallick RB: Accurate processing and pseudouridylation of chloroplast transfer RNA in a chloroplast transcription system. Plant Mol Biol 3: 97?109 (1984). (10.1007/BF00040034) / Plant Mol Biol by BM Greenberg (1984)
  40. Gruissem W: Chloroplast RNA: transcription and processing. In Marcus A (ed) Biochemistry of Plants, pp. 151?191. Academic Press, San Diego (1989). / Biochemistry of Plants by W Gruissem (1989)
  41. Gruissem W, Elsner-Menzel C, Latshaw S, Narita JO, Schaffer MA, Zurawski G: A subpopulation of spinach chloroplast tRNA genes does not require upstream promoter elements for transcription. Nucl Acids Res 14: 7541?7556 (1986). (10.1093/nar/14.19.7541) / Nucl Acids Res by W Gruissem (1986)
  42. Gruissem W, Greenberg BM, Zurawski G, Prescott DM, Hallick RB: Biosynthesis of chloroplast transfer RNA in a spinach chloroplast transcription system. Cell 35: 815?828 (1983). (10.1016/0092-8674(83)90114-9) / Cell by W Gruissem (1983)
  43. Gruissem W, Zurawski G: Identification and mutational analysis of the promoter for a spinach chloroplast transfer RNA gene. EMBO J 4: 1637?1644 (1985). (10.1002/j.1460-2075.1985.tb03831.x) / EMBO J by W Gruissem (1985)
  44. Gruissem W, Zurawski G: Analysis of promoter regions for the spinach chloroplast rbc L, atp B and psbA genes. EMBO J 4: 3375?3383 (1985). (10.1002/j.1460-2075.1985.tb04093.x) / EMBO J by W Gruissem (1985)
  45. Haff LA, Bogorad L: Hybridization of maize chloroplast DNA with transfer ribonucleic acids. Biochem 15: 4105?4109 (1976). (10.1021/bi00663a029) / Biochem by LA Haff (1976)
  46. Hagemann R: Genetics and molecular biology of plastids of higher plants. In: Stadler Symposium vol. 11, pp. 91?116. University of Missouri, Columbia (1979). / Stadler Symposium vol. 11 by R Hagemann (1979)
  47. Hallick RB: Proposals for the naming of chloroplast genes. II Update to the nomenclature of genes for thylakoid membrane polypeptides. Plant Mol Biol Rep 7: 266?275 (1989). (10.1007/BF02668635) / Plant Mol Biol Rep by RB Hallick (1989)
  48. Hallick RB, Gingrich JC, Johanningmeier U, Passavant CW. Introns in Euglena and Nicotiana chloroplast protein genes. In: vanVloten-Doting L, Groot GSP, Hall TC (eds) Molecular Form and Function of the Plant Genome, pp, 211?231. Plenum Press, New York (1985). / Molecular Form and Function of the Plant Genome by RB Hallick (1985)
  49. Hallick RB, Hollingsworth MJ, Nickoloff JA: Transfer RNA genes of Euglena gracilis chloroplast DNA. Plant Mol Biol 3: 169?175 (1984). (10.1007/BF00016064) / Plant Mol Biol by RB Hallick (1984)
  50. Hallick RB, Lipper C, Richards OD, Rutter WJ: Isolation of a transcriptionally active chromosome from chloroplasts of Euglena gracilis. Biochem 15: 3039?3045 (1976). (10.1021/bi00659a016) / Biochem by RB Hallick (1976)
  51. Heinemeyer W, Alt J, Herrmann RG: Nucleotide sequence of the clustered genes for apocytochrome b6 and subunit 4 of the cytochrome b/f complex in the spinach plastid chromosome. Curr Genet 8: 543?549 (1984). (10.1007/BF00410442) / Curr Genet by W Heinemeyer (1984)
  52. Herrmann RG, Westhoff P, Alt J, Tittgen J and Nelson N. Thylakoid membrane protein and their genes. In: vanVloten-Doting L, Groot GSP, Hall TC (eds) Molecular Form and Function of the Plant Genome, pp. 233?256. Plenum Press, New York (1985). / Molecular Form and Function of the Plant Genome by RG Herrmann (1985)
  53. Hiratsuka J, Shimada H, Whittier RF, Ishibashi T, Sakamoto M, Mori M, Kondon C, Honji Y, Sun CR, Meng BY, Li Y, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M: The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet 217: 185?194 (1989). (10.1007/BF02464880) / Mol Gen Genet by J Hiratsuka (1989)
  54. Hirschberg J, McIntosh L. Molecular basis of herbicide resistance in Amaranthus hybridus. Science 222: 1346?1349 (1983). (10.1126/science.222.4630.1346) / Science by J Hirschberg (1983)
  55. Hu J, Bogorad L: Maize chloroplast RNA polymerase: the 180-, 120-, and 38-kilodalton polypeptides are encoded in chloroplast genes. Proc Natl Acad Sci USA 87: 1531?1535 (1990). (10.1073/pnas.87.4.1531) / Proc Natl Acad Sci USA by J Hu (1990)
  56. Hu J, Troxler RF, Bogorad L: Maize chloroplast RNA polymerase: the 78-kilodalton polypeptide is encoded by the plastid rpoC1 gene. Nucl Acids Res 19: 3431?3434 (1991). (10.1093/nar/19.12.3431) / Nucl Acids Res by J Hu (1991)
  57. Igloi GL, Meinke A, Döry I, Kössel H: Nucleotide sequence of the maize chloroplast rpo B/C1/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains. Mol Gen Genet 221: 379?394 (1990). (10.1007/BF00259403) / Mol Gen Genet by GL Igloi (1990)
  58. Johnson CH, Kruft V, Subramanian AR: Identification of a plastid-specific ribosomal protein in the 30 S subunit of chloroplast ribosomes and isolation of the cDNA clone encoding its cytoplasmic precursor. J Biol Chem 265: 12790?12795 (1990). (10.1016/S0021-9258(19)38228-6) / J Biol Chem by CH Johnson (1990)
  59. Jolly SO, Bogorad L: Preferential transcription of cloned maize chloroplast DNA sequences by maize chloroplast RNA polymerase. Proc Natl Acad Sci USA 77: 822?826 (1990). (10.1073/pnas.77.2.822) / Proc Natl Acad Sci USA by SO Jolly (1990)
  60. Karabin GD, Farley M, Hallick RB: Chloroplast gene for M r 32 000 polypeptide of photosystem II in Euglena gracilis is interrupted by four introns with conserved boundary sequences. Nucl Acids Res 12: 5801?5812 (1984). (10.1093/nar/12.14.5801) / Nucl Acids Res by GD Karabin (1984)
  61. Koch W, Edwards K, Kössel H: Sequencing of the 16S?23S Spacer in a ribosomal RNA operon of zea mays chloroplast DNA reveals two split tRNA genes. Cell 25: 203?213 (1981). (10.1016/0092-8674(81)90245-2) / Cell by W Koch (1981)
  62. Kohchi T, Umesono K, Ogura Y, Komine Y, Nakahigashi K, Komano T, Yamada Y, Ozeki H, Ohyama K: A nicked group II intron and trans-splicing in liverwort, Marchantia polymorpha, chloroplasts. Nucl Acids Res 16: 10025?10036 (1988). (10.1093/nar/16.21.10025) / Nucl Acids Res by T Kohchi (1988)
  63. Koller B, Delius H: Vicia faba chloroplast DNA has only one set of ribosomal RNA genes as shown by partial denaturation mapping and R-loop analysis. Mol Gen Genet 178: 261?269 (1980). (10.1007/BF00270471) / Mol Gen Genet by B Koller (1980)
  64. Koller B, Gingrich JC, Stiegler GL, Farley MA, Delius H, Hallick RB: Nine introns with conserved boundary sequences in the Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. Cell 36: 545?553 (1984). (10.1016/0092-8674(84)90247-2) / Cell by B Koller (1984)
  65. Kössel H, Döry I, Igloi G, Maier R: A leucine-zipper motif in photosystem I. Plant Mol Biol 15: 497?499 (1990). (10.1007/BF00019166) / Plant Mol Biol by H Kössel (1990)
  66. Krebbers ET, Larrinua IM, McIntosh L, Bogorad L: The maize chloroplast genes for the ? and ? subunits of the photosynthetic coupling factor CF1 are fused. Nucl Acids Res 10: 4985?5002 (1982). (10.1093/nar/10.16.4985) / Nucl Acids Res by ET Krebbers (1982)
  67. Kück U: The intron of a plastid gene from a green alga contains an open reading frame for a reverse transcriptase-like enzyme. Mol Gen Genet 218: 257?265 (1989). (10.1007/BF00331276) / Mol Gen Genet by U Kück (1989)
  68. Kück U, Choquet Y, Schneider M, Dron M, Bennoun P: Structural and transcriptional analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: evidence for in vivo trans-splicing. EMBO J 6: 2185?2195 (1987). (10.1002/j.1460-2075.1987.tb02489.x) / EMBO J by U Kück (1987)
  69. Kuchka MR, Goldschmidt-Clermont M, vanDillewijn J, Rochaix JD: Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 of PS II. Cell 58: 869?876 (1989). (10.1016/0092-8674(89)90939-2) / Cell by MR Kuchka (1989)
  70. Lerbs S, Bräutigam E, Mache R: DNA-dependent RNA polymerase of spinach chloroplasts: characterization of ?-like and ?-like polypeptides. Mol Gen Genet 211: 459?464 (1988). (10.1007/BF00425701) / Mol Gen Genet by S Lerbs (1988)
  71. Lerbs S, Bräutigam E, Parthier B: Polypeptides of DNA-dependent RNA polymerase of spinach chloroplast: characterization by antibody-linked polymerase assay and determination of sites of synthesis. EMBO J 4: 1661?1666 (1985). (10.1002/j.1460-2075.1985.tb03834.x) / EMBO J by S Lerbs (1985)
  72. Li Y, Sugiura M: Three distinct ribonucleoproteins from tobacco chloroplasts: each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs. EMBO J 9: 3059?3066 (1990). (10.1002/j.1460-2075.1990.tb07502.x) / EMBO J by Y Li (1990)
  73. Link G: DNA sequence requirements for the accurate transcription of a protein-coded plastid gene in a plastid in vitro system from mustard (Sinapis alba L.). EMBO J 3: 1697?1704 (1984). (10.1002/j.1460-2075.1984.tb02034.x) / EMBO J by G Link (1984)
  74. Loiseaux-deGoër S, Markowicz Y, Dalmon J, Audren H: Physical maps of the two circular plastid DNA molecules of the brown alga Pylaiella littoralis (L.) Kjellm. Curr Genet 14: 155?162 (1988). (10.1007/BF00569339) / Curr Genet by S Goër Loiseaux-de (1988)
  75. Manning JE, Wolstenholme DR, Ryan RS, Hunter JA, Richards OC: Circular chloroplast DNA from Euglena gracilis. Proc Natl Acad Sci USA 68: 1169?1173 (1971). (10.1073/pnas.68.6.1169) / Proc Natl Acad Sci USA by JE Manning (1971)
  76. Markowicz Y, Loiseaux-deGoër S, Mache R: Presence of a 16S rRNA pseudogene in the bi-molecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implication. Curr Genet 14: 599?608 (1988). (10.1007/BF00434086) / Curr Genet by Y Markowicz (1988)
  77. Matsubayashi T, Wakasugi T, Shinozaki K, Shinozaki KY, Zaita N, Hidaka T, Meng BY, Ohto C, Tanaka M, Kato A, Maruyama T, Sugiura M: Six chloroplast genes (ndh A to F) homologous to human mitochondrial genes encoding components of the respiratory-chain NADH dehydrogenase are actively expressed: determination of the splice-sites in ndh A and ndh B pre-mRNAs Mol Gen Genet 210: 385?393 (1987). (10.1007/BF00327187) / Mol Gen Genet by T Matsubayashi (1987)
  78. McIntosh L, Poulsen C, Bogorad L: Chloroplast gene sequence for the large subunit of ribulose bisphosphate carboxylase of maize. Nature 288: 556?560 (1980). (10.1038/288556a0) / Nature by L McIntosh (1980)
  79. Meng BY, Tanaka M, Wakasugi T, Ohme M, Shinozaki K, Sugiura M: Cotranscription of the genes encoding two P700 chlorophyll a apoproteins with the gene for ribosomal protein CS14: determination of the transcriptional initiation site by in vitro capping. Curr Genet 14: 395?400 (1988). (10.1007/BF00419998) / Curr Genet by BY Meng (1988)
  80. Michel F, Dujon B: Conservation of RNA secondary structure in two intron families including mitochondrial-chloroplast-and nuclear-encoded members. EMBO J 2: 33?38 (1983). (10.1002/j.1460-2075.1983.tb01376.x) / EMBO J by F Michel (1983)
  81. Montandon PE, Stutz E: The genes for the ribosomal proteins S12 and S7 are clustered with the gene for the EF-Tu protein on the chloroplast genome of Euglena gracilis. Nucl Acids Res 12: 2851?2859 (1984). (10.1093/nar/12.6.2851) / Nucl Acids Res by PE Montandon (1984)
  82. Mullet JE: Chloroplast development and gene expression. Annu Rev Plant Physiol 39: 475?502 (1988). (10.1146/annurev.pp.39.060188.002355) / Annu Rev Plant Physiol by JE Mullet (1988)
  83. Nickelsen J, Link G: Interaction of a 3' RNA region of the mustard trnK gene with chloroplast proteins. Nucl Acids Res 17: 9637?9648 (1989). (10.1093/nar/17.23.9637) / Nucl Acids Res by J Nickelsen (1989)
  84. Ohme M, Tanaka M, Chunwongse J, Shinozaki K, Sugiura M: A tobacco chloroplast DNA sequence possibly coding for a polypeptide similar to E. coli RNA polymerase ? subunit. FEBS Lett 200: 87?90 (1986). (10.1016/0014-5793(86)80516-6) / FEBS Lett by M Ohme (1986)
  85. Ohyama K, Fukuzawa H, Kohchi T, Shirai H, Sano T, Sano S, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H: Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572?574 (1986). (10.1038/322572a0) / Nature by K Ohyama (1986)
  86. Orozco EMJr, Rushlow KE, Dodd JR, Hallick RB: Euglena gracilis chloroplast ribosomal RNA transcription units II. Nucleotide sequence homology between the 16S-23S ribosomal RNA spacer and the 16S ribosomal RNA leader regions. J Biol Chem 255: 10997?11003 (1980). (10.1016/S0021-9258(19)70406-2) / J Biol Chem by EM Orozco Jr (1980)
  87. Palmer JD: Chloroplast DNA exists in two orientations. Nature 301: 92?93 (1983). (10.1038/301092a0) / Nature by JD Palmer (1983)
  88. Palmer JD: Comparative organization of chloroplast genomes. Annu Rev Genet 19: 325?354 (1985). (10.1146/annurev.ge.19.120185.001545) / Annu Rev Genet by JD Palmer (1985)
  89. Pfitzinger H, Weil JH, Pillay DTN, Guillemaut P: Codon recognition mechanisms in plant chloroplasts. Plant Mol Biol 14: 804?814 (1990). / Plant Mol Biol by H Pfitzinger (1990)
  90. Pillay DTN, Guillemaut G, Weil JH: Nucleotide sequences of three soybean chloroplast tRNAs-Leu and re-examination of bean chloroplast tRNA2-Leu sequence. Nucl Acids Res 12: 2997?3001 (1984). (10.1093/nar/12.6.2997) / Nucl Acids Res by DTN Pillay (1984)
  91. Plant AL, Gray JC: Introns in chloroplast protein-coding genes of land plants. Photosynth Res 16: 23?39 (1988). (10.1007/BF00039484) / Photosynth Res by AL Plant (1988)
  92. Reith M, Cattolico RA. Inverted repeat of Olisthodiscus luteus chloroplast DNA contains genes for both subunits of ribulose-1,5-bisphosphate carboxylase and the 32 000-dalton QB protein: phylogenetic implications. Proc Natl Acad Sci USA. 83: 8599?8603 (1986). (10.1073/pnas.83.22.8599) / Proc Natl Acad Sci USA by M Reith (1986)
  93. Rochaix JD, Malnoe P. Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardtii. Cell 15: 661?670 (1978). (10.1016/0092-8674(78)90034-X) / Cell by JD Rochaix (1978)
  94. Sager R, Ishida MR: Chloroplast DNA in Chlamydomonas. Proc Natl Acad Sci USA 50: 725?730 (1963). (10.1073/pnas.50.4.725) / Proc Natl Acad Sci USA by R Sager (1963)
  95. Sager R, Schlanger G. Chloroplast DNA: physical and genetic studies. In: King RC (ed) Handbook of Genetics, vol. 5, pp. 371?423. Plenum Press, New York (1976). (10.1007/978-1-4615-7148-3_12) / Handbook of Genetics by R Sager (1976)
  96. Schuster G, Gruissem W: Chloroplast mRNA 3? end processing requires a nuclear-encoded RNA-binding protein. EMBO J 10: 1493?1502 (1991). (10.1002/j.1460-2075.1991.tb07669.x) / EMBO J by G Schuster (1991)
  97. Schwarz Z, Kössel H: The primary structure of 16S rDNA from Zea mays chloroplast is homologous to E. coli 10S rRNA. Nature 283: 739?742 (1980). (10.1038/283739a0) / Nature by Z Schwarz (1980)
  98. Sexton TB, Christopher DA, Mullet JE: Light-induced switch in barley psbD-psbC promoter utilization: a novel mechanism regulating chloroplast gene expression. EMBO J 9: 4485?4494 (1990). (10.1002/j.1460-2075.1990.tb07899.x) / EMBO J by TB Sexton (1990)
  99. Shimada H, Fukuta M, Ishikawa M, Sugiura M: Rice chloroplast RNA polymerase genes: the absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2. Mol Gen Genet 221: 395?402 (1990). (10.1007/BF00259404) / Mol Gen Genet by H Shimada (1990)
  100. Shimada H, Sugiura M: Pseudogenes and short repeated sequences in the rice chloroplast genome. Curr Genet 16: 293?301 (1989). (10.1007/BF00422116) / Curr Genet by H Shimada (1989)
  101. Shimada H, Sugiura M: Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Nucl Acids Res 19: 983?995 (1991). (10.1093/nar/19.5.983) / Nucl Acids Res by H Shimada (1991)
  102. Shinozaki K, Deno H, Sugita M, Kuramitsu S, Sugiura M: Intron in the gene for the ribosomal proteins S16 of tobacco chloroplast and its conserved boundary sequences. Mol Gen Genet 202: 1?5 (1986). (10.1007/BF00330508) / Mol Gen Genet by K Shinozaki (1986)
  103. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Shinozaki KY, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M: The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043?2049 (1986). (10.1002/j.1460-2075.1986.tb04464.x) / EMBO J by K Shinozaki (1986)
  104. Sijben-Müller G, Hallick R, Alt J, Westhoff P, Herrmann RG. Spinach plastid genes coding for initiation factor IF-1, ribosomal protein S11 and RNA polymerase ?-subunit. Nucl Acids Res 14: 1029?1044 (1986). (10.1093/nar/14.2.1029) / Nucl Acids Res by G Sijben-Müller (1986)
  105. Spielmann A, Roux E, vonAllmen JM, Stutz E: The soybean chloroplast genome: complete sequence of the rps 19 gene, including flanking parts containing exon 2 of rpl 2 (upstream), but lacking rpl 22 (downstream). Nucl Acids Res 16: 1199 (1988). (10.1093/nar/16.3.1199) / Nucl Acids Res by A Spielmann (1988)
  106. Steinmetz AA, Castroviejo M, Sayre RT, Bogorad L: Protein PSII-G: an additional component of photosystem II identified through its plastid gene in maize. J Biol Chem 261: 2485?2488 (1986). (10.1016/S0021-9258(17)35808-8) / J Biol Chem by AA Steinmetz (1986)
  107. Stern DB, Gruissem W. Control of plastid gene expression: 3? inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription. Cell 51: 1145?1157 (1987). (10.1016/0092-8674(87)90600-3) / Cell by DB Stern (1987)
  108. Stern DB, Jones H, Gruissem W: Function of plastid mRNA 3? inverted repeats: RNA stabilization and genespecific protein binding. J Biol Chem 264: 18742?18750 (1989). (10.1016/S0021-9258(18)51530-1) / J Biol Chem by DB Stern (1989)
  109. Stern DB, Radwanski ER, Kindle KL: A 3? stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo. Plant Cell 3: 285?297 (1991). / Plant Cell by DB Stern (1991)
  110. Sugita M, Sugiura M: Putative gene of tobacco chloroplast coding for ribosomal protein similar to E. coli ribosomal protein S19. Nucl Acids Res 11: 1913?1918 (1983). (10.1093/nar/11.6.1913) / Nucl Acids Res by M Sugita (1983)
  111. Sugiura M, Torazawa K, Wakasugi T: Chloroplast genes coding for ribosomal proteins in land plants. In: Mache R, Stutz E, Subramanian AR (eds) The Translational Apparatus of Photosynthetic Organelles, pp. 59?69. Springer-Verlag, Berlin (1991). (10.1007/978-3-642-75145-5_5) / The Translational Apparatus of Photosynthetic Organelles by M Sugiura (1991)
  112. Takaiwa F, Sugiura M: The nucleotide sequence of 4.5S and 5S ribosomal RNA genes from tobacco chloroplasts. Mol Gen Genet 180: 1?4 (1980). (10.1007/BF00267344) / Mol Gen Genet by F Takaiwa (1980)
  113. Tanaka M, Wakasugi T, Sugita M, Shinozaki K, Sugiura M: Genes for the eight ribosomal proteins are clustered on the chloroplast genome of tobacco (Nicotiana tabacum): similarity to the S10 and spc operons of Escherichia coli. Proc Natl Acad Sci USA 83: 6030?6034 (1986). (10.1073/pnas.83.16.6030) / Proc Natl Acad Sci USA by M Tanaka (1986)
  114. Thomas F, Massenet O, Dorne AM, Briat JF, Mache R: Expression of the rpl23, rpl2 and rps19 genes in spinach chloroplasts. Nucl Acids Res 16: 2461?2472 (1988). (10.1093/nar/16.6.2461) / Nucl Acids Res by F Thomas (1988)
  115. Turmel M, Boulanger J, Schnare MN, Gray MW, Lemieux C: Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos. J Mol Biol 218: 293?311 (1991). (10.1016/0022-2836(91)90713-G) / J Mol Biol by M Turmel (1991)
  116. Wakasugi T, Ohme M, Shinozaki K, Sugiura M: Structures of tobacco chloroplast genes for tRNA-Ile (CAU), tRNA-Leu (CAA), tRNA-Cys (GCA), tRNA-Ser (UGA) and tRNA-Thr (GGU): a compilation of tRNA genes from tobacco chloroplasts. Plant Mol Biol 7: 385?392 (1986). (10.1007/BF00032568) / Plant Mol Biol by T Wakasugi (1986)
  117. Watson JC, Surzycki SJ: Both the chloroplast and nuclear genomes of Chlamydomonas reinhardtii share homology with Escherichia coli genes for transcriptional and translational components. Curr Genet 7: 201?210 (1983). (10.1007/BF00434891) / Curr Genet by JC Watson (1983)
  118. Webber AN, Malkin R: Photosystem I reaction-centre proteins contain leucine zipper motifs: a proposed role in dimer formation. FEBS Lett 264: 1?4 (1990). (10.1016/0014-5793(90)80749-9) / FEBS Lett by AN Webber (1990)
  119. Westhoff P, Herrmann RG: Complex RNA maturation in chloroplasts: the psbB operon from spinach. Eur J Biochem 171: 551?564 (1988). (10.1111/j.1432-1033.1988.tb13824.x) / Eur J Biochem by P Westhoff (1988)
  120. Willey DL, Auffret AD, Gray JC: Structure and topology of cytochrome f in pea chloroplast membranes. Cell 36: 555?562 (1984). (10.1016/0092-8674(84)90248-4) / Cell by DL Willey (1984)
  121. Yamada T, Shimaji M: Peculiar feature of the organization of rRNA genes of the Chlorella chloroplast DNA. Nucl Acids Res 14: 3827?3839 (1986). (10.1093/nar/14.9.3827) / Nucl Acids Res by T Yamada (1986)
  122. Ye L, Li Y, Fukami-Kobayashi K, Go M, Konishi T, Watanabe A, Sugiura M: Diversity of a ribonucleoprotein family in tobacco chloroplasts: two new chloroplast ribonucleoproteins and a phylogenetic tree of ten chloroplast RNA-binding domains. Nucl Acids Res 19: 6485?6490 (1991). (10.1093/nar/19.23.6485) / Nucl Acids Res by L Ye (1991)
  123. Yokoi F, Tanaka M, Wakasugi T, Sugiura M: The chloroplast gene for ribosomal protein CL23 is functional in tobacco. FEBS Lett 281: 64?66 (1991). (10.1016/0014-5793(91)80359-B) / FEBS Lett by F Yokoi (1991)
  124. Zaita N, Torazawa K, Shinozaki K, Sugiura M: Trans splicing in vivo: joining of transcripts from the ?divided? gene for ribosomal protein S12 in the chloroplasts of tobacco. FEBS Lett 210: 153?156 (1987). (10.1016/0014-5793(87)81326-1) / FEBS Lett by N Zaita (1987)
  125. Zaitlin D, Hu J, Bogorad L: Binding and transcription of relaxed DNA templates by fractions of maize chloroplast extracts. Proc Natl Acad Sci USA 86: 876?880 (1989). (10.1073/pnas.86.3.876) / Proc Natl Acad Sci USA by D Zaitlin (1989)
  126. Zurawski G, Bohnert HJ, Whitfeld PR, Bottomley W: Nucleotide sequence of the gene for the M R 32,000 thylakoid membrane protein from Spinacia oleracea and Nicotiana debneyi predicts a totally conserved primary translation product of M R 38,950. Proc Natl Acad Sci USA 79: 7699?7703 (1982). (10.1073/pnas.79.24.7699) / Proc Natl Acad Sci USA by G Zurawski (1982)
  127. Zurawski G, Bottomley W, Whitfeld PR: Structure of the genes for the ? and ? subunit of spinach chloroplast ATPase indicates a'dicistronic mRNA and an overlapping translation stop/start signal. Proc Natl Acad Sci USA 79: 6260?6264 (1982). (10.1073/pnas.79.20.6260) / Proc Natl Acad Sci USA by G Zurawski (1982)
  128. Zurawski G, Clegg MT: Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Annu Rev Plant Physiol 38: 391?418 (1987). (10.1146/annurev.pp.38.060187.002135) / Annu Rev Plant Physiol by G Zurawski (1987)
Dates
Type When
Created 20 years, 10 months ago (Oct. 28, 2004, 7:30 p.m.)
Deposited 4 years, 2 months ago (June 26, 2021, 10:18 p.m.)
Indexed 3 weeks, 4 days ago (Aug. 7, 2025, 5:04 p.m.)
Issued 33 years, 4 months ago (May 1, 1992)
Published 33 years, 4 months ago (May 1, 1992)
Published Print 33 years, 4 months ago (May 1, 1992)
Funders 0

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@article{Sugiura_1992, title={The chloroplast genome}, volume={19}, ISSN={1573-5028}, url={http://dx.doi.org/10.1007/bf00015612}, DOI={10.1007/bf00015612}, number={1}, journal={Plant Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Sugiura, Masahiro}, year={1992}, month=may, pages={149–168} }