10.1007/978-3-642-61202-2_21
Crossref book-chapter
Springer Berlin Heidelberg
Nucleic Acids and Molecular Biology (297)
Bibliography

Williams, K. P., & Bartel, D. P. (1996). In Vitro Selection of Catalytic RNA. Catalytic RNA, 367–381.

Authors 2
  1. K. P. Williams (first)
  2. D. P. Bartel (additional)
References 63 Referenced 12
  1. Bartel DP, Szostak JW (1993) Isolation of new ribozymes from a large pool of random sequences. Science 261: 1411–1418 (10.1126/science.7690155) / Science by DP Bartel (1993)
  2. Bartel DP, Szostak JW (1994) Study of RNA-protein recognition by in vitro selection. In: Nagai K, Mattaj IW (eds) RNA-protein interactions. IRL Press, Oxford, pp 248–268 / RNA-protein interactions by DP Bartel (1994)
  3. Beaudry AA, Joyce GF (1992) Directed evolution of an RNA enzyme. Science 257: 635–641 (10.1126/science.1496376) / Science by AA Beaudry (1992)
  4. Benner SA, Ellington AD, Tauer A (1989) Modern metabolism as a palimpsest of the RNA world. Proc Natl Acad Sci USA 86: 7045–7058 (10.1073/pnas.86.18.7054) / Proc Natl Acad Sci USA by SA Benner (1989)
  5. Berzal-Herranz A, Joseph S, Burke JM (1992) In vitro selection of active hairpin ribozymes by sequential RNA-catalyzed cleavage and ligation reactions. Genes Dev 6: 129–134 (10.1101/gad.6.1.129) / Genes Dev by A Berzal-Herranz (1992)
  6. Berzal-Herranz A, Joseph S, Chowrira BM, Butcher SE, Burke JM (1993) Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme. EMBO J 12: 2567–2573 (10.1002/j.1460-2075.1993.tb05912.x) / Embo J by A Berzal-Herranz (1993)
  7. Bock LC, Griffin LC, Latham JA, Vermaas EH, Toole JJ (1992) Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 355: 564–566 (10.1038/355564a0) / Nature by LC Bock (1992)
  8. Breaker RR, Joyce GF (1994) A DNA enzyme that cleaves RNA. Chem Biol 1: 223–229 (10.1016/1074-5521(94)90014-0) / Chem Biol by RR Breaker (1994)
  9. Bufardeci E, Fabbri S, Baldi MI, Mattoccia E, Tocchini-Valentini GP (1993) In vitro genetic analysis of the structural features of the pre-tRNA required for determination of the 3’ splice site in the intron excision reaction. EMBO J 12: 4697–4704 (10.1002/j.1460-2075.1993.tb06158.x) / Embo J by E Bufardeci (1993)
  10. Burgstaller P, Famulok M (1994) Isolation of RNA aptamers for biological cofactors by in vitro selection. Angew Chem Int Ed Engl 33: 1084–1087 (10.1002/anie.199410841) / Angew Chem Int Ed Engl by P Burgstaller (1994)
  11. Chapman KB, Szostak JW (1994) In vitro selection of catalytic RNAs. Cuff Opin Struct Biol 4: 618–622 (10.1016/S0959-440X(94)90227-5) / Cuff Opin Struct Biol by KB Chapman (1994)
  12. Chapman KB, Szostak JW (1995) Isolation of a ribozyme with 5’-5’ ligase activity. Chem Biol 2: 325–333 (10.1016/1074-5521(95)90051-9) / Chem Biol by KB Chapman (1995)
  13. Cuenoud B, Szostak JW (1995) A DNA metalloenzyme with DNA ligase activity. Nature 375: 611–614 (10.1038/375611a0) / Nature by B Cuenoud (1995)
  14. Dai X, De Mesmaeker A, Joyce GF (1995) Cleavage of an amide bond by a ribozyme. Science 267: 237–240 (10.1126/science.7809628) / Science by X Dai (1995)
  15. Dahm SC, Uhlenbeck OC (1991) Role of divalent metal ions in the hammerhead RNA cleavage reaction. Biochemistry 30: 9464–9469 (10.1021/bi00103a011) / Biochemistry by SC Dahm (1991)
  16. Dahm SC, Derrick WB, Uhlenbeck OC (1993) Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism. Biochemistry 32: 13040–13045 (10.1021/bi00211a013) / Biochemistry by SC Dahm (1993)
  17. Dichtl B, Pan T, Di Renzo AB, Uhlenbeck OC (1993) Replacement of RNA hairpins by in vitro selected tetranucleotides. Nucl Acids Res 21: 531–535 (10.1093/nar/21.3.531) / Nucl Acids Res by B Dichtl (1993)
  18. Doudna JA, Szostak JW (1989a) Miniribozymes, small derivatives of the sun Y intron, are catalytically active. Mol Cell Biol 9: 5480–5483 (10.1128/MCB.9.12.5480) / Mol Cell Biol by JA Doudna (1989)
  19. Doudna JA, Szostak JW (1989b) RNA-catalysed synthesis of complementary-strand RNA. Nature 339: 519–522 (10.1038/339519a0) / Nature by JA Doudna (1989)
  20. Ekland E, Bartel DP (1995) The secondary structure and sequence optimization of an RNA ligase ribozyme. Nucl Acids Res 23: 3231–3238 (10.1093/nar/23.16.3231) / Nucl Acids Res by E Ekland (1995)
  21. Ekland E, Szostak JW, Bartel DP (1995) Structurally complex and highly active RNA ligases derived from random RNA sequences. Science 269: 364–370 (10.1126/science.7618102) / Science by E Ekland (1995)
  22. Ellington AD (1994) Aptamers achieve the desired recognition. Curr Biol 4: 427–429 (10.1016/S0960-9822(00)00093-2) / Curr Biol by AD Ellington (1994)
  23. Ellington AD, Szostak JW (1990) In vitro selecton of RNA molecules that bind specific ligands. Nature 346: 818–822 (10.1038/346818a0) / Nature by AD Ellington (1990)
  24. Ellington AD, Szostak JW (1992) Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature 355: 850–852 (10.1038/355850a0) / Nature by AD Ellington (1992)
  25. Gesteland RF, Atkins JF (1993) The RNA world. Cold Spring Harbor Lab Press, New York / The RNA world by RF Gesteland (1993)
  26. Gold L, Polisky B, Uhlenbeck O, Yarus M (1995) Diversity of oligonucleotide functions. Annu Rev Biochem 64: 763–797 (10.1146/annurev.bi.64.070195.003555) / Annu Rev Biochem by L Gold (1995)
  27. Green R, Szostak JW (1992) Selection of a ribozyme that functions as a superior template in a self-copying reaction. Science 258: 1910–1915 (10.1126/science.1470913) / Science by R Green (1992)
  28. Green R, Szostak JW (1994) In vitro genetic analysis of the hinge region between helical elements P5–P4-P6 and P7–P3-P8 in the sun Y group I self-splicing intron. J Mol Biol 235: 140–155 (10.1016/S0022-2836(05)80022-1) / J Mol Biol by R Green (1994)
  29. Green R, Ellington AD, Szostak JW (1990) In vitro genetic analysis of the Tetrahymena self-splicing intron. Nature 347: 406–408 (10.1038/347406a0) / Nature by R Green (1990)
  30. Herschlag D, Cech TR (1990) DNA cleavage catalysed by the ribozyme from Tetrahymena. Nature 344: 405–409 (10.1038/344405a0) / Nature by D Herschlag (1990)
  31. Huizenga DE, Szostak JW (1995) A DNA aptamer that binds adenosine and ATP. Biochemistry 34: 656–665 (10.1021/bi00002a033) / Biochemistry by DE Huizenga (1995)
  32. Illangasekare M, Sanchez G, Nickles T, Yarus M (1995) Aminoacyl-RNA synthesis catalyzed by an RNA. Science 267: 643–647 (10.1126/science.7530860) / Science by M Illangasekare (1995)
  33. Janda KD (1994) Tagged versus untagged libraries: methods for the generation and screening of combinatorial chemical libraries. Proc Natl Acad Sci USA 91: 10779–10785 (10.1073/pnas.91.23.10779) / Proc Natl Acad Sci USA by KD Janda (1994)
  34. Joseph S, Berzal-Herranz A, Chowrira BM, Butcher SE, Burke JM (1993) Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates. Genes Dev 7: 130–138 (10.1101/gad.7.1.130) / Genes Dev by S Joseph (1993)
  35. Koizumi M, Ohtsuka E (1991) Effects of phosphorothioate and 2-amino groups in hammerhead ribozymes on cleavage rates and Mgt+ binding. Biochemistry 30: 5145–5150 (10.1021/bi00235a005) / Biochemistry by M Koizumi (1991)
  36. Lauhon CT, Szostak JW (1995) RNA aptamers that bind flavin and nicotinamide redox cofactors. J Am Chem Soc 117: 1246–1257 (10.1021/ja00109a008) / J Am Chem Soc by CT Lauhon (1995)
  37. Lehman N, Joyce GF (1993a) Evolution in vitro of an RNA enzyme with altered metal dependence. Nature 361: 182–185 (10.1038/361182a0) / Nature by N Lehman (1993)
  38. Lehman N, Joyce GF (1993b) Evolution in vitro: analysis of a lineage of ribozymes. Curr Biol 3: 723–734 (10.1016/0960-9822(93)90019-K) / Curr Biol by N Lehman (1993)
  39. Liu F, Altman S (1994) Differential evolution of substrates for an RNA enzyme in the presence and absence of its protein cofactor. Cell 77: 1093–1100 (10.1016/0092-8674(94)90448-0) / Cell by F Liu (1994)
  40. Long DM, Uhlenbeck OC (1994) Kinetic characterization of intramolecular and intermolecular hammerhead RNAs with stem II deletions. Proc Natl Acad Sci USA 91: 6977–6981 (10.1073/pnas.91.15.6977) / Proc Natl Acad Sci USA by DM Long (1994)
  41. Lorsch JR, Szostak JW (1994a) In vitro evolution of new ribozymes with polynucleotide kinase activity. Nature 371: 31–36 (10.1038/371031a0) / Nature by JR Lorsch (1994)
  42. Lorsch JR, Szostak JW (1994b) In vitro selection of RNA aptamers specific for cyanocobalamin. Biochemiostry 33: 973–982 (10.1021/bi00170a016) / Biochemiostry by JR Lorsch (1994)
  43. Mills DR, Peterson RL, Spiegelman S (1967) An extracellular darwinian experiment with a self-duplicating nucleic acid molecule. Proc Natl Acad Sci USA 58: 217–224 (10.1073/pnas.58.1.217) / Proc Natl Acad Sci USA by DR Mills (1967)
  44. Nakamaye KL, Eckstein F (1994) AUA-cleaving hammerhead ribozymes: attempted selection for improved cleavage. Biochemistry 33: 1271–1277 (10.1021/bi00171a030) / Biochemistry by KL Nakamaye (1994)
  45. Orgel LE, Sulston JE (1971) Polynucleotide replication and the origin of life. In: Kimball AP, Oro J (eds) Prebiotic and biochemical evolution. North-Holland Publ, Amsterdam, p 89 / Prebiotic and biochemical evolution by LE Orgel (1971)
  46. Pan T, Uhlenbeck OC (1992a) In vitro selection of RNAs that undergo autolytic cleavage with Pb2+. Biochemistry 31: 3887–3895 (10.1021/bi00131a001) / Biochemistry by T Pan (1992)
  47. Pan T, Uhlenbeck OC (1992b) A small metalloribozyme with a two-step mechanism. Nature 358: 560–563 (10.1038/358560a0) / Nature by T Pan (1992)
  48. Pan T, Dichtl B, Uhlenbeck OC (1994) Properties of an in vitro selected Pb2+ cleavage motif. Biochemistry 33: 9561–9565 (10.1021/bi00198a023) / Biochemistry by T Pan (1994)
  49. Piccirilli JA, Vyle JS, Caruthers MH, Cech TR (1993) Metal ion catalysis in the Tetrahymena ribozyme reaction. Nature 361: 85–88 (10.1038/361085a0) / Nature by JA Piccirilli (1993)
  50. Prudent JR, Tetsuo U, Schultz PG (1994) Expanding the scope of RNA catalysis. Science 264: 1924–1927 (10.1126/science.8009223) / Science by JR Prudent (1994)
  51. Pyle AM (1993) Ribozymes: a distinct class of metalloenzymes. Science 261: 709–714 (10.1126/science.7688142) / Science by AM Pyle (1993)
  52. Robertson DL, Joyce GF (1990) Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 344: 467–468 (10.1038/344467a0) / Nature by DL Robertson (1990)
  53. Sassanfar M, Szostak JW (1993) An RNA motif that binds ATP. Nature 364: 550–553 (10.1038/364550a0) / Nature by M Sassanfar (1993)
  54. Slim G, Gait MJ (1991) Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes. Nucl Acids Res 19: 1183–1188 (10.1093/nar/19.6.1183) / Nucl Acids Res by G Slim (1991)
  55. Steitz TA, Steitz JA (1993) A general two-metal-ion mechanism for catalytic RNA. Proc Natl Acad Sci USA 90: 6498–6502 (10.1073/pnas.90.14.6498) / Proc Natl Acad Sci USA by TA Steitz (1993)
  56. Tsang J, Joyce GF (1994) Evolutionary optimization of the catalytic properties of a DNA-cleaving ribozyme. Biochemistry 33: 5966–5973 (10.1021/bi00185a038) / Biochemistry by J Tsang (1994)
  57. Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymeease., Science 249: 505–510 (10.1126/science.2200121) / Science by C Tuerk (1990)
  58. White HB III (1982) Evolution of coenzymes. In: Everse J, Anderson B, Yu K-S (eds) The pyridine nucleotide coenzymes. Academic Press, New York, pp 1–17 / The pyridine nucleotide coenzymes by HB White (1982)
  59. Williams KP, Imahori H, Fujimoto DN, Inoue T (1994) Selection of novel forms of a functional domain within the Tetrahymena ribozyme. Nucl Acids Res 22: 2003–2009 (10.1093/nar/22.11.2003) / Nucl Acids Res by KP Williams (1994)
  60. Williams KP, Ciafré S, Tocchini-Valentini GP (1995) Selection of novel Mgt -depen-dent self-cleaving ribozymes. EMBO J 14: 4551–4557 (10.1002/j.1460-2075.1995.tb00134.x) / Embo J by KP Williams (1995)
  61. Wilson C, Szostak JW (1995) In vitro evolution of a self-alkylating ribozyme. Nature 374: 777–782 (10.1038/374777a0) / Nature by C Wilson (1995)
  62. Yarus M (1993) How many catalytic RNAs? Ions and the Cheshire cat conjecture. FASEB J 7: 31–39 (10.1096/fasebj.7.1.8422972) / Faseb J by M Yarus (1993)
  63. Yuan Y, Altman S (1994) Selection of guide sequences that direct efficient cleavage of mRNA by human ribonuclease P. Science 263: 1269–1273 (10.1126/science.8122108) / Science by Y Yuan (1994)
Dates
Type When
Created 13 years, 10 months ago (Oct. 8, 2011, 2:29 a.m.)
Deposited 4 years, 3 months ago (May 6, 2021, 8:08 a.m.)
Indexed 11 months, 3 weeks ago (Sept. 6, 2024, 6:46 a.m.)
Issued 29 years, 7 months ago (Jan. 1, 1996)
Published 29 years, 7 months ago (Jan. 1, 1996)
Published Print 29 years, 7 months ago (Jan. 1, 1996)
Funders 0

None