DOI: 10.1007/978-1-60761-594-1_18. Computer-Based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities

Computer-Based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities

10.1007/978-1-60761-594-1_18

Crossref book-chapter

Humana Press

Methods in Molecular Biology (297)

Bibliography

Mikut, R. (2009). Computer-Based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities. Antimicrobial Peptides, 287â299.

Authors 1

Ralf Mikut (first)

References 15 Referenced 24

Perkins, R., Fang, H., Tong, W., and Welsh, W. (2003) Quantitative structure-activity relationship methods: perspectives on drug discovery and toxicology. Environ. Toxicol. Chem. 22, 1666–1679. (10.1897/01-171) / Environ. Toxicol. Chem by R Perkins (2003)
Hellberg, S., Sjostrom, M., Skagerberg, B., and Wold, S. (1987) Peptide quantitative structure-activity relationships, a multivariate approach. J. Med. Chem. 30, 1126–1235. (10.1021/jm00390a003) / J. Med. Chem by S Hellberg (1987)
Cherkasov, A., Hilpert, K., Jenssen, H., Fjell, C. D., Waldbrook, M., Mullaly, S. C., Volkmer, R., and Hancock, R. E. (2008) Use of artificial intelligence in the design of small peptide antibiotics effective against a broad spectrum of highly antibiotic-resistant superbugs. ACS Chem. Biol., 4, 65–74. (10.1021/cb800240j) / ACS Chem. Biol by A Cherkasov (2008)
Frecer, V. (2006) QSAR analysis of antimicrobial and haemolytic effects of cyclic cationic antimicrobial peptides derived from protegrin-1. Bioorgan. Med. Chem. 14, 6065–6674. (10.1016/j.bmc.2006.05.005) / Bioorgan. Med. Chem by V Frecer (2006)
Hilpert, K., Winkler, D. F. H., and Hancock, R. E. W. (2007) Peptide arrays on cellulose support: SPOT synthesis – a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion. Nat. Protoc. 2, 1333–1349. (10.1038/nprot.2007.160) / Nat. Protoc by K Hilpert (2007)
Hilpert, K. (2009) High-throughput screening for antimicrobial peptides using the SPOT Technique. In Part II: Analysis, Properties, and Mechanisms of Antimicrobial Peptides (from this book). (10.1007/978-1-60761-594-1_9)
Mikut, R. and Hilpert, K. (2009) Interpretable features for the activity prediction of short antimicrobial peptides using fuzzy logic. Int. J. Pept. Res. Ther. 15 (2), 129–137. (10.1007/s10989-009-9172-5) / Int. J. Pept. Res. Ther by R Mikut (2009)
Mikut, R., Burmeister, O., Braun, S., and Reischl, M. (2008a). The open source MATLAB toolbox Gait-CAD and its application to bioelectric signal processing. In Proceedings of DGBMT-Workshop Biosignal Analysis, Potsdam, 109–111.
Hildebrand, P. (2006). Zur Strukturvorhersage der Membranproteine. PhD thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät.
White, S. and Wimley, W. (1999) Membrane protein folding and stability: physical principles. Annu. Rev. Biophys. Biomol. Struct. 28, 319–365. (10.1146/annurev.biophys.28.1.319) / Annu. Rev. Biophys. Biomol. Struct by S White (1999)
Tatsuoka, M. M. (1988) Multivariate Analysis. New York: Mac Millan. / Multivariate Analysis by MM Tatsuoka (1988)
Mikut, R., Reischl, M., Ulrich, A., and Hilpert, K. (2008b). Data-based activity analysis and interpretation of small antibacterial peptides. In Proceedings of the 18th Workshop Computational Intelligence, Universitätsverlag Karlsruhe, 189–203.
DeLean, A. (1978) Simultaneous analysis of families of sigmoidal curves: application to bioassay, radioligand assay, and physiological dose-response curves. Am. J. Physiol. Gastr. L. Physiol. 235, 97–102. (10.1152/ajpcell.1978.235.3.C97) / Am. J. Physiol. Gastr. L. Physiol by A DeLean (1978)
Sandberg, M., Eriksson, L., Jonsson, J., Sjostrom, M., and Wold, S. (1998) New chemical descriptors relevant for the design of biologically active peptides: a multivariate characterization of 87 amino acids. J. Med. Chem. 41, 2481–2491. (10.1021/jm9700575) / J. Med. Chem by M Sandberg (1998)
Mekenyan, O., Nikolova, N., and Schmieder, P. (2003) Dynamic 3D QSAR techniques: applications in toxicology. J. Mol. Struct. THEOCHEM 622, 147–165. (10.1016/S0166-1280(02)00625-5) / J. Mol. Struct. THEOCHEM by O Mekenyan (2003)

Dates

Type	When
Created	15 years, 7 months ago (Jan. 21, 2010, 6:16 a.m.)
Deposited	6 years, 3 months ago (May 25, 2019, 12:27 a.m.)
Indexed	11 months, 2 weeks ago (Sept. 5, 2024, 9:42 a.m.)
Issued	15 years, 7 months ago (Dec. 28, 2009)
Published	15 years, 7 months ago (Dec. 28, 2009)
Published Online	15 years, 7 months ago (Dec. 28, 2009)
Published Print	15 years, 7 months ago (Jan. 1, 2010)

Funders 0

None

BibTeX

@inbook{Mikut_2009, title={Computer-Based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities}, ISBN={9781607615941}, ISSN={1940-6029}, url={http://dx.doi.org/10.1007/978-1-60761-594-1_18}, DOI={10.1007/978-1-60761-594-1_18}, booktitle={Antimicrobial Peptides}, publisher={Humana Press}, author={Mikut, Ralf}, year={2009}, month=dec, pages={287–299} }

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