Proton Transfer Pathways in the Reaction Center of Rhodobacter Sphaeroides: A Computational Study
10.1007/978-1-4615-3050-3_40
Crossref book-chapter
Springer US
The Photosynthetic Bacterial Reaction Center II (297)
Bibliography

Beroza, P., Fredkin, D. R., Okamura, M. Y., & Feher, G. (1992). Proton Transfer Pathways in the Reaction Center of Rhodobacter Sphaeroides: A Computational Study. The Photosynthetic Bacterial Reaction Center II, 363–374.

Authors 4
  1. P. Beroza (first)
  2. D. R. Fredkin (additional)
  3. M. Y. Okamura (additional)
  4. G. Feher (additional)
References 31 Referenced 15
  1. J.P. Allen, G. Feher, T.O. Yeates, H. Komiya, and D.C. Rees, Structure of the reaction center from Rhodobacter sphaeroides R-26: the cofactors, Proc. Natl. Acad. Sci. USA 84:5730 (1987). (10.1073/pnas.84.16.5730) / Proc. Natl. Acad. Sci. USA by JP Allen (1987)
  2. J.P. Allen, G. Feher, T.O. Yeates, H. Komiya, and D.C. Rees, Structure of the reaction center from Rhodobacter sphaeroides R-26: the protein subunits, Proc. Natl. Acad. Sci. USA 84:6162 (1987). (10.1073/pnas.84.17.6162) / Proc. Natl. Acad. Sci. USA by JP Allen (1987)
  3. J. Deisenhofer, O. Epp, K. Miki, R. Huber, and H. Michel, Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3 Å resolution, Nature 318:618 (1985) (10.1038/318618a0) / Nature by J Deisenhofer (1985)
  4. J.F. Nagle and S. Tristram-Nagle, Hydrogen bonded chain mechanisms for proton conduction and proton pumping, J. Membr. Biol. 74:1 (1983). (10.1007/BF01870590) / J. Membr. Biol. by JF Nagle (1983)
  5. Z. Schulten and K. Schulten, Proton conduction through proteins: an overview of theoretical principles and applications, Methods Enzymol. 127:419 (1986). (10.1016/0076-6879(86)27033-0) / Methods Enzymol by Z Schulten (1986)
  6. A. Warshel, Correlation between the structure and efficiency of light-induced proton pumps, Methods Enzymol. 127:578 (1986). (10.1016/0076-6879(86)27045-7) / Methods Enzymol by A Warshel (1986)
  7. M.Y. Okamura and G. Feher, Proton transfer in reaction centers from photosynthetic bacteria, Ann. Rev. of Biochem. 61:861 (1992) (10.1146/annurev.bi.61.070192.004241) / Ann. Rev. of Biochem. by MY Okamura (1992)
  8. M.L. Paddock, S.H. Rongey, G. Feher, and M.Y. Okamura, Pathway of proton transfer in bacterial reaction centers: replacement of glutamic acid 212 in the L subunit by glutamine inhibits quinone (secondary acceptor) turnover, Proc. Natl. Acad. Sci. USA 86: 6602 (1989). (10.1073/pnas.86.17.6602) / Proc. Natl. Acad. Sci. USA by ML Paddock (1989)
  9. C.H. Chang, O. El-Kabbani, D. Tiede, J. Norris, and M. Schiffer, Structure of the membrane-bound protein photosynthetic reaction center from Rhodobacter sphaeroides, Biochemistry 30:5352 (1991). (10.1021/bi00236a005) / Biochemistry by CH Chang (1991)
  10. T.A. Jones, Interactive computer graphics: FRODO, Methods Enzymol. 115:157 (1985). (10.1016/0076-6879(85)15014-7) / Methods Enzymol. by TA Jones (1985)
  11. A.A. Rashin, M. Iofin, and B. Honig, Internal cavities and buried waters in globular proteins, Biochemistry 25:3619 (1986). (10.1021/bi00360a021) / Biochemistry by AA Rashin (1986)
  12. J.B. Goodenough, Proton movements in inorganic materials, Methods Enzymol. 127:263 (1986). (10.1016/0076-6879(86)27022-6) / Methods Enzymol. by JB Goodenough (1986)
  13. S. Scheiner, Theoretical calculation of energetics of proton translocation through membranes, Methods Enzymol. 127:456 (1986). (10.1016/0076-6879(86)27035-4) / Methods Enzymol. by S Scheiner (1986)
  14. H. Treutlein, K. Schulten, A.T. Brünger, M. Karplus, J. Deisenhofer, and H. Michel, Chromophobe-protein interactions and the function of the photosynthetic reaction center: a molecular dynamics study, Proc. Natl. Acad. Sci. USA 89:75 (1992). (10.1073/pnas.89.1.75) / Proc. Natl. Acad. Sci. USA by K Schulten (1992)
  15. F.M. Richards, Areas, volumes, packing, and protein structure, Ann. Rev. Biophys. Bioeng. 6:151 (1977). (10.1146/annurev.bb.06.060177.001055) / Ann. Rev. Biophys. Bioeng. by FM Richards (1977)
  16. F.C. Bernstein, T.F. Koetzle, G.J.B. Williams, E.F. Meyer Jr., M.D. Brice, J.R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi, The protein data bank: a computer-based archival file for macromolecular structure, J. Mol. Biol. 112:535 (1977). (10.1016/S0022-2836(77)80200-3) / J. Mol. Biol. by FC Bernstein (1977)
  17. M.L. Paddock, G. Feher, and M.Y. Okamura, pH dependence of charge recombination in RCs from Rb. sphaeroides in which Glu-L212 is replaced with Asp, Biophys. J. 57:569a (1990). / Biophys. J. by ML Paddock (1990)
  18. E. Takahashi and C.A. Wraight, Proton and electron transfer in the acceptor quinone complex of Rhodobacter sphaeroides reaction centers: characterization of site-directed mutants of the two ionizable residues, GluL212 and AspL213, in the QB binding site, Biochemistry 31:855 (1992). (10.1021/bi00118a031) / Biochemistry by E Takahashi (1992)
  19. M.L. Paddock, P.H. McPherson, G. Feher, and M.Y. Okamura, Pathway of proton transfer in bacterial reaction centers: replacement of serine-L223 by alanine inhibits electron and proton transfers associated with reduction of quinone to dihy-droquinone, Proc. Natl. Acad. Sci. USA 87:6803 (1990). (10.1073/pnas.87.17.6803) / Proc. Natl. Acad. Sci. USA by ML Paddock (1990)
  20. E. Takahashi and C.A. Wraight, A crucial role for Asp 213 in the proton transfer pathway to the secondary quinone of reaction centers from Rhodobacter sphaeroides, Biochim. Biophys. Acta. 1020:107 (1990). (10.1016/0005-2728(90)90100-I) / Biochim. Biophys. Acta. by E Takahashi (1990)
  21. J.C. Williams, private communication.
  22. M.L. Paddock, S.H. Rongey, P.H. McPherson, A. Juth, G. Feher, and M.Y. Okamura, manuscript in preparation.
  23. Y. Cao, G. Varo, M. Chang, B. Ni, R. Needleman, and J.K. Lanyi, Water is required for proton transfer from aspartate-96 to the bacteriorhodopsin Shiff base, Biochemistry 30:10972 (1991). (10.1021/bi00109a023) / Biochemistry by Y Cao (1991)
  24. H. Michel, K.A. Weyer, H. Gruenberg, I. Dunger, D. Oesterhelt, and F. Lottspe-ich, The ‘light’ and ‘medium’ subunits of the photosynthetic reaction centre from Rhodopseudomonas viridis: isolation of the genes, nucleotide and amino acid sequence, EMBO J. 5:1149 (1986). (10.1002/j.1460-2075.1986.tb04340.x) / EMBO J. by H Michel (1986)
  25. G. Bélanger, J. Bérard, P. Corriveau, and G. Gingras, The structural genes coding for the L and M subunits of Rhodospirillum rubrum photoreaction center, J. Biol. Chem. 236:7632 (1988). (10.1016/S0021-9258(18)68545-X) / J. Biol. Chem. by G Bélanger (1988)
  26. Y.A. Ovchinnikov, N.G. Abdulaev, A.S. Zolotarev, B.E. Shmukler, A.A. Zargarov, M.A. Kutuzov, I.N. Telezhinshaya, and N.B. Levina, Photosynthetic reaction centre of Chloroflexus aurantiacus: I. primary structure of L-subunit FEBS Lett. 231:237 (1988). (10.1016/0014-5793(88)80739-7) / FEBS Lett. by YA Ovchinnikov (1988)
  27. Y.A. Ovchinnikov, N.G. Abdulaev, A.S. Zolotarev, B.E. Shmukler, A.A. Zargarov, M.A. Kutuzov, I.N. Telezhinshaya, and N.B. Levina, Photosynthetic reaction centre of Chloroflexus aurantiacus: primary structure of M-subunit, FEBS Lett. 232:364 (1988). (10.1016/0014-5793(88)80770-1) / FEBS Lett. by YA Ovchinnikov (1988)
  28. S.H. Rongey, M.L. Paddock, G. Feher, and M.Y. Okamura, manuscript in preparation.
  29. M. Schiffer, C.K. Chan, C.H. Chang, T.J. DiMagno, G.R. Fleming, S.L. Nance, J.R. Norris, S.W. Snyder, M.C Thurnauer, D. Tiede, and D.K. Hanson, these proceedings.
  30. P.H. McPherson, S.H. Rongey, M.L. Paddock, G. Feher, and M.Y. Okamura, The rate of electron transfer Q-QB→ QĀQB in RCs from Rb. Sphaeroides in which Asp-L213 is replaced with Asn, Biophys. J. 59:142a (1991). / Biophys. J. by PH McPherson (1991)
  31. P. Beroza, D.R. Fredkin, M.Y. Okamura, and G. Feher, Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides, Proc. Natl. Acad. Sci. USA 88:5804 (1991). (10.1073/pnas.88.13.5804) / Proc. Natl. Acad. Sci. USA by P Beroza (1991)
Dates
Type When
Created 14 years, 1 month ago (Aug. 4, 2011, 4:47 p.m.)
Deposited 3 years, 9 months ago (Nov. 29, 2021, 8:34 a.m.)
Indexed 4 weeks, 2 days ago (Aug. 6, 2025, 9:29 a.m.)
Issued 33 years, 8 months ago (Jan. 1, 1992)
Published 33 years, 8 months ago (Jan. 1, 1992)
Published Print 33 years, 8 months ago (Jan. 1, 1992)
Funders 0

None

@inbook{Beroza_1992, title={Proton Transfer Pathways in the Reaction Center of Rhodobacter Sphaeroides: A Computational Study}, ISBN={9781461530503}, url={http://dx.doi.org/10.1007/978-1-4615-3050-3_40}, DOI={10.1007/978-1-4615-3050-3_40}, booktitle={The Photosynthetic Bacterial Reaction Center II}, publisher={Springer US}, author={Beroza, P. and Fredkin, D. R. and Okamura, M. Y. and Feher, G.}, year={1992}, pages={363–374} }