DOI: 10.1006/jtbi.2000.1073. Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective

Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective

10.1006/jtbi.2000.1073

Crossref journal-article

Elsevier BV

Journal of Theoretical Biology (78)

Bibliography

SCHILLING, C. H., LETSCHER, D., & PALSSON, B. Ã. (2000). Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective. Journal of Theoretical Biology, 203(3), 229â248.

Authors 3

CHRISTOPHE H. SCHILLING (first)
DAVID LETSCHER (additional)
BERNHARD Ø. PALSSON (additional)

References 34 Referenced 503

10.1038/4462 / Nature Genet. / Exploring the new world of the genome with DNA microarrays by BROWN (1999)
{'key': '10.1006/jtbi.2000.1073_RF2', 'first-page': '1', 'article-title': 'Stability of complex reaction networks', 'volume': '43', 'author': 'CLARKE', 'year': '1980', 'journal-title': 'Adv. Chem. Phys.'} / Adv. Chem. Phys. / Stability of complex reaction networks by CLARKE (1980)
10.1063/1.441885 / J. Chem. Phys. / Complete set of steady states for the general stoichiometric dynamical system by CLARKE (1981)
10.1007/BF02918360 / Cell Biophys. / Stoichiometric network analysis by CLARKE (1988)
10.1002/(SICI)1097-0290(19980420)58:2/3<162::AID-BIT8>3.0.CO;2-J / Biotechnol. Bioeng. / How will bioinformatics influence metabolic engineering by EDWARDS (1988)
{'key': '10.1006/jtbi.2000.1073_RF6', 'first-page': '127', 'article-title': 'Mechanistic classification of chemical oscillators and the role of species', 'volume': '80', 'author': 'EISWIRTH', 'year': '1991', 'journal-title': 'Adv. Chem. Phys.'} / Adv. Chem. Phys. / Mechanistic classification of chemical oscillators and the role of species by EISWIRTH (1991)
{'key': '10.1006/jtbi.2000.1073_RF7', 'first-page': '97', 'article-title': 'The analysis of flux in substrate cycles', 'author': 'FELL', 'year': '1993'} / The analysis of flux in substrate cycles by FELL (1993)
10.1126/science.7542800 / Science / Whole-genome random sequencing and assembly of Haemophilus influenza Rd by FLEISCHMANN (1995)
{'key': '10.1006/jtbi.2000.1073_RF9', 'series-title': 'Linear Algebra', 'author': 'HADLEY', 'year': '1961'} / Linear Algebra by HADLEY (1961)
10.1016/S0167-7799(97)01123-2 / Trends Biotechnol. / Oligomer-chip technology by HOHEISEL (1997)
10.1016/S0168-9525(97)01223-7 / Trends Genet. / A database for post-genome analysis by KANEHISA (1997)
10.1093/nar/26.1.50 / Nucl. Acids Res. / EcoCyc: encyclopedia of Escherichia coli genes and metabolism by KARP (1998)
{'key': '10.1006/jtbi.2000.1073_RF13', 'series-title': 'Linear Algebra and Its Applications', 'author': 'LAY', 'year': '1997'} / Linear Algebra and Its Applications by LAY (1997)
10.1002/(SICI)1097-0290(19961005)52:1<129::AID-BIT13>3.0.CO;2-J / Biotechnol. Bioeng. / Pathway analysis, engineering, and physiological considerations for redirecting central metabolism by LIAO (1996)
10.1038/4447 / Nat. Genet. / High density synthetic oligonucleotide arrays by LIPSHUTZ (1999)
10.1146/annurev.biophys.27.1.199 / Ann. Rev. Biophys. Biomol. Struct. / Simulation of prokaryotic genetic circuits by MCADAMS (1998)
10.1038/nbt0197-3 / Nat. Biotechnol. / What lies beyond bioinformatics? by PALSSON (1997)
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10.1016/S0022-5193(88)80073-0 / J. theoret. Biol. / Metabolic control theory: a structural approach by REDER (1988)
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10.1016/S0167-7799(98)01219-0 / Trends Biotechnol. / Microarrays: biotechnology's discovery platform for functional genomics by SCHENA (1998)
10.1006/jtbi.2000.1088 / J. theor. Biol. / Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis by SCHILLING (2000)
10.1021/bp9900357 / Biotechnol. Prog. / Toward metabolic phenomics: analysis of genomic data using flux balances by SCHILLING (1999)
10.1073/pnas.95.8.4193 / Proc. Nat. Acad. Sci. U.S.A. / The underlying pathway structure of biochemical reaction networks by SCHILLING (1998)
10.1021/bp990048k / Biotechnol. Prog. / Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era by SCHILLING (1999)
10.1021/jp952853x / J. Phys. Chem. / Categorization of some oscillatory enzymatic reactions by SCHREIBER (1996)
{'key': '10.1006/jtbi.2000.1073_RF27', 'first-page': '79', 'article-title': 'Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed', 'volume': '9', 'author': 'SCHUSTER', 'year': '1993', 'journal-title': 'Comput. Appl. Biosci.'} / Comput. Appl. Biosci. / Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed by SCHUSTER (1993)
10.1016/S0167-7799(98)01290-6 / Trends Biotechnol. / Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering by SCHUSTER (1999)
10.1142/S0218339094000131 / J. Biol. Syst. / On elementary flux modes in biochemical reaction systems at steady state by SCHUSTER (1994)
{'key': '10.1006/jtbi.2000.1073_RF30', 'first-page': '151', 'article-title': 'Elementary modes of functioning in bio-chemical networks', 'author': 'SCHUSTER', 'year': '1996'} / Elementary modes of functioning in bio-chemical networks by SCHUSTER (1996)
10.1093/nar/26.1.43 / Nucl. Acids Res. / MPW: the metabolic pathways database by SELKOV (1998)
10.1002/bit.260310611 / Biotechnol. Bioeng. / MPS: an artificially intelligent software system for the analysis and synthesis of metabolic pathways by SERESSIOTIS (1988)
10.1021/j100114a006 / J. Phys. Chem. / Analysis of a mechanism of the chloride–iodide reaction by STRASSER (1993)
10.1093/bioinformatics/15.1.72 / Bioinformatics / E-CELL: software environment for whole-cell simulation by TOMITA (1999)

Dates

Type	When
Created	22 years, 11 months ago (Sept. 18, 2002, 2:57 p.m.)
Deposited	6 years, 3 months ago (May 9, 2019, 12:51 a.m.)
Indexed	3 weeks, 5 days ago (Aug. 7, 2025, 4:50 a.m.)
Issued	25 years, 5 months ago (April 1, 2000)
Published	25 years, 5 months ago (April 1, 2000)
Published Print	25 years, 5 months ago (April 1, 2000)

Funders 0

None

BibTeX

@article{SCHILLING_2000, title={Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective}, volume={203}, ISSN={0022-5193}, url={http://dx.doi.org/10.1006/jtbi.2000.1073}, DOI={10.1006/jtbi.2000.1073}, number={3}, journal={Journal of Theoretical Biology}, publisher={Elsevier BV}, author={SCHILLING, CHRISTOPHE H. and LETSCHER, DAVID and PALSSON, BERNHARD Ø.}, year={2000}, month=apr, pages={229–248} }

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