Crossref
journal-article
Elsevier BV
Journal of Structural Biology (78)
References
63
Referenced
255
10.1093/nar/25.17.3389
/ Nucleic Acids Res. / Gapped BLAST and PSI-BLAST: A new generation of protein database search programs by Altschul (1997)10.1006/jmbi.2000.3684
/ J. Mol. Biol. / Homology-based method for identification of protein repeats using statistical significance estimates by Andrade (2000)10.1006/jsbi.2001.4392
/ J. Struct. Biol. / Protein repeats: Structures, functions and evolution by Andrade (2001)10.1006/jmbi.2000.3837
/ J. Mol. Biol. / HMMSTR: A hidden Markov model for local sequence-structure correlations in proteins by Bystroff (2000)10.1006/jmbi.1998.1943
/ J. Mol. Biol. / Prediction of local structure in proteins using a library of sequence-structure motifs by Bystroff (1998)10.1073/pnas.96.15.8396
/ Proc. Natl. Acad. Sci. USA / Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif by Chen (1999)10.1110/ps.31901
/ Protein Sci. / Sialidase like asp-boxes: Sequence-similar structures within different protein folds by Copley (2001)10.1016/S0968-0004(98)01254-7
/ Trends Biochem Sci. / Catalytic triads and their relatives by Dodson (1998)10.1093/nar/24.13.2488
/ Nucleic Acids Res. / The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA by Doherty (1996)10.1038/35011520
/ Nature / Protein interaction maps for complete genomes based on gene fusion events by Enright (1999)10.1016/S0092-8674(00)81190-3
/ Cell / Crystal structure of the catalytic domain of the human cell cycle control phosphatase, Cdc25A by Fauman (1998)10.1038/381059a0
/ Nature / Synthesis of long prebiotic oligomers on mineral surfaces by Ferris (1996)10.1038/344656a0
/ Nature / Chloroplast DNA sequence from a miocene Magnolia species by Golenberg (1990)10.1093/nar/29.3.638
/ Nucleic Acids Res. / KH domain: One motif, two folds by Grishin (2001)10.1006/jsbi.2001.4335
/ J. Struct. Biol. / Fold change in the evolution of protein structure by Grishin (2001)10.1073/pnas.74.2.547
/ Proc. Natl. Acad. Sci. USA / Identification of the iron-sulfur center in trimethylamine dehydrogenase by Hill (1977)10.1093/nar/27.1.215
/ Nucleic Acids Res. / The PROSITE database, its status in 1999 by Hofmann (1999){'key': '10.1006/jsbi.2001.4393_RF18', 'first-page': '140', 'article-title': 'Decision support system for the evolutionary classification of protein structures', 'volume': '5', 'author': 'Holm', 'year': '1997', 'journal-title': 'Proc. Int. Conf. Intell. Syst. Mol. Biol.'}
/ Proc. Int. Conf. Intell. Syst. Mol. Biol. / Decision support system for the evolutionary classification of protein structures by Holm (1997)10.1093/nar/29.1.346
/ Nucleic Acids Res. / Collecting and harvesting biological data: The GPCRDB and NucleaRDB information systems by Horn (2001)10.1038/35057062
/ Nature (2001)10.1006/jmbi.1999.3389
/ J. Mol. Biol. / The serine protease inhibitor canonical loop conformation: Examples found in extracellular hydrolases, toxins, cytokines and viral proteins by Jackson (2000)10.1046/j.1365-2958.1999.01553.x
/ Mol. Microbiol. / The widely conserved Era G-protein contains an RNA-binding domain required for Era function in vivo by Johnstone (1999)10.1006/jsbi.2000.4328
/ J. Struct. Biol. / Proteins with repeated sequences: Structural prediction and modeling by Kajava (2001)- Keller, M., Blochl, E., Wachetershauser, G., and Stetter, K. O.1994Formation of amide bonds without a condensation agent and implications for the origin of life, 368, 836–838.
10.1093/oxfordjournals.molbev.a026297
/ Mol. Biol. Evol. / Evolution of two-component signal transduction by Koretke (2000)10.1107/S0021889891004399
/ J. Appl. Crystallogr. / MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures by Kraulis (1991)10.1006/jmbi.1999.3136
/ J. Mol. Biol. / A census of protein repeats by Marcotte (1999)10.1038/47048
/ Nature / A combined algorithm for genome-wide prediction of protein function by Marcotte (1999)10.1016/0079-6107(85)90004-5
/ Prog. Biophys. Mol. Biol. / The structure, function and evolution of cytochromes by Mathews (1985)10.1002/(SICI)1097-0134(19990401)35:1<70::AID-PROT7>3.0.CO;2-9
/ Proteins / Identification of homologous core structures by Matsuo (1999)10.1016/0022-2836(72)90508-6
/ J. Mol. Biol. / Repeating sequences and gene duplication in proteins by McLachlan (1972)10.1002/prot.340140206
/ Proteins / Structural principles for the propeller assembly of beta-sheets: The preference for seven-fold symmetry by Murzin (1992)10.1006/jmbi.1993.1186
/ J. Mol. Biol. / Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors by Murzin (1993)10.1038/nsb0195-25
/ Nature Struct Biol. / A ribosomal protein module in EF-G and DNA gyrase by Murzin (1995)10.1016/0022-2836(92)90668-A
/ J. Mol. Biol. / β-Trefoil fold: Patterns of structure and sequence in the Kunitz inhibitors interleukins-1 beta and 1 alpha and fibroblast growth factors by Murzin (1992)10.1016/S0022-2836(05)80134-2
/ J. Mol. Biol. / SCOP: A structural classification of proteins database for the investigation of sequences and structures by Murzin (1995)10.1038/20601
/ Nature / Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima by Nelson (1999){'key': '10.1006/jsbi.2001.4393_RF38', 'series-title': 'Evolution by Gene Duplication', 'author': 'Ohno', 'year': '1970'}
/ Evolution by Gene Duplication by Ohno (1970)10.1021/bi992267k
/ Biochemistry / Identification of residues involved in the interaction of Staphylococcus aureus fibronectin-binding protein with the 4F15F1 module pair of human fibronectin using heteronuclear NMR spectroscopy by Penkett (2000)10.1038/scientificamerican1193-86
/ Sci. Am. / Ancient DNA by Pabo (1993)10.1006/jmbi.2000.4087
/ J. Mol. Biol. / Identification of distant homologues of fibroblast growth factors suggests a common ancestor for all beta-trefoil proteins by Ponting (2000)10.1006/jmbi.1999.2827
/ J. Mol. Biol. / Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer by Ponting (1999)10.1016/S0968-0004(00)89003-9
/ Trends Biochem. Sci. / Swaposins: Circular permutations within genes encoding saposin homologues by Ponting (1995)10.1042/0264-6021:3390223
/ Biochem. J. / Identification of the Mg2+-binding site in the P-type ATPase and phosphatase members of the HAD (haloacid dehalogenase) superfamily by structural similarity to the response regulator protein CheY by Ridder (1999)10.1074/jbc.273.29.18067
/ J. Biol. Chem. / The Cdc42/Rac interactive binding region motif of the Wiskott Aldrich syndrome protein (WASP) is necessary but not sufficient for tight binding to Cdc42 and structure formation by Rudolph (1998)10.1038/35035069
/ Nature / The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum by Ruepp (2000)10.1006/jmbi.1998.1844
/ J. Mol. Biol. / Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution by Russell (1998)10.1093/protein/7.12.1407
/ Protein Eng. / Domain insertion by Russell (1994)10.1006/jmbi.1997.1019
/ J. Mol. Biol. / Recognition of analogous and homologous protein folds: Analysis of sequence and structure conservation by Russell (1997)10.1016/S0959-440X(98)80071-7
/ Curr. Opin. Struct. Biol. / Protein fold irregularities that hinder sequence analysis by Russell (1998)10.1016/0968-0004(90)90281-F
/ Trends Biochem. Sci. / The P-loop—A common motif in ATP- and GTP-binding proteins by Saraste (1990){'key': '10.1006/jsbi.2001.4393_RF52', 'first-page': '333', 'article-title': 'Linguistic approaches to biological sequences', 'volume': '13', 'author': 'Searls', 'year': '1997', 'journal-title': 'Comput. Appl. Biosci.'}
/ Comput. Appl. Biosci. / Linguistic approaches to biological sequences by Searls (1997)10.1002/(SICI)1097-0134(19990101)34:1<82::AID-PROT7>3.0.CO;2-A
/ Proteins / Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins by Simmons (1999)10.1016/S0021-9258(19)41819-X
/ J. Biol. Chem. / Reconstitution of Escherichia coli thioredoxin from complementing peptide fragments obtained by cleavage at methionine-37 or arginine-73 by Slaby (1975)10.1038/379369a0
/ Nature / Crystal structure of a G-protein bg dimer at 2.1Å resolution by Sondek (1996)10.1042/bj1690361
/ Biochem. J. / Participation of the iron-sulphur cluster and of the covalently bound coenzyme of trimethylamine dehydrogenase in catalysis by Steenkamp (1978)10.1002/pro.5560021214
/ Protein Sci. / Classification of doubly wound nucleotide binding topologies using automated loop searches by Swindells (1993)10.1038/nsb0794-421
/ Nature Struct. Biol. / Loopy similarities by Swindells (1994)10.1038/35038060
/ Nature / Isolation of a 250-million-year-old halotolerant bacterium from a primary salt crystal by Vreeland (2000)10.1002/j.1460-2075.1982.tb01276.x
/ EMBO J. / Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold by Walker (1982)10.1002/pro.5560061104
/ Protein Sci. / TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites by Wallace (1997)10.1002/pro.5560050603
/ Protein Sci. / Derivation of 3D coordinate templates for searching structural databases: Application to Ser-His-Asp catalytic triads in the serine proteinases and lipases by Wallace (1996)10.1002/pro.5560030301
/ Protein Sci. / Autonomous subdomains in protein folding by Wu (1994)
Dates
Type | When |
---|---|
Created | 22 years, 11 months ago (Sept. 18, 2002, 2:57 p.m.) |
Deposited | 4 years, 4 months ago (May 3, 2021, 12:31 a.m.) |
Indexed | 5 days ago (Aug. 31, 2025, 6:10 a.m.) |
Issued | 24 years, 4 months ago (May 1, 2001) |
Published | 24 years, 4 months ago (May 1, 2001) |
Published Print | 24 years, 4 months ago (May 1, 2001) |
@article{Lupas_2001, title={On the Evolution of Protein Folds: Are Similar Motifs in Different Protein Folds the Result of Convergence, Insertion, or Relics of an Ancient Peptide World?}, volume={134}, ISSN={1047-8477}, url={http://dx.doi.org/10.1006/jsbi.2001.4393}, DOI={10.1006/jsbi.2001.4393}, number={2–3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Lupas, Andrei N. and Ponting, Chris P. and Russell, Robert B.}, year={2001}, month=may, pages={191–203} }