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Elsevier BV
Journal of Molecular Biology (78)
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Kuttler, C., Nussbaum, A. K., Dick, T. P., Rammensee, H.-G., Schild, H., & Hadeler, K.-P. (2000). An algorithm for the prediction of proteasomal cleavages. Journal of Molecular Biology, 298(3), 417–429.

Authors 6
  1. Christina Kuttler (first)
  2. Alexander K Nussbaum (additional)
  3. Tobias P Dick (additional)
  4. Hans-Georg Rammensee (additional)
  5. Hansjörg Schild (additional)
  6. Karl-Peter Hadeler (additional)
References 43 Referenced 116
  1. 10.1016/0014-5793(95)00492-R / FEBS Letters / Primary structures of two homologous subunits of PA28, a gamma-interferon-inducible protein activator of the 20 S proteasome by Ahn (1995)
  2. 10.1074/jbc.272.3.1791 / J. Biol. Chem. / Processive degradation of proteins and other catalytic properties of the proteasome from Thermoplasma acidophilum by Akopian (1997)
  3. 10.1073/pnas.94.14.7156 / Proc. Natl Acad. Sci. USA / Identification of the yeast 20 S proteasome catalytic centers and subunit interactions required for active-site formation by Arendt (1997)
  4. 10.1016/S0092-8674(00)80929-0 / Cell / The proteasome by Baumeister (1998)
  5. 10.1084/jem.179.3.901 / J. Exp. Med. / Interferon gamma stimulation modulates the proteolytic activity and cleavage site preference of 20 S mouse proteasomes by Boes (1994)
  6. 10.1002/(SICI)1097-0134(199601)24:1<51::AID-PROT4>3.0.CO;2-R / Proteins: Struct. Funct. Genet. / Predicting human immunodeficiency virus protease cleavage sites in proteins by a discriminant function method by Chou (1996)
  7. 10.1073/pnas.94.20.10850 / Proc. Natl Acad. Sci. USA / Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide by Craiu (1997)
  8. 10.4049/jimmunol.161.2.617 / J. Immunol. / Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules by Daniel (1998)
  9. 10.1021/bi00224a022 / Biochemistry / Degradation of oxidized insulin B chain by the multiproteinase complex macropain (proteasome) by Dick (1991)
  10. 10.4049/jimmunol.152.8.3884 / J. Immunol. / Proteolytic processing of ovalbumin and beta-galactosidase by the proteasome to a yield antigenic peptides by Dick (1994)
  11. 10.1016/S0092-8674(00)80097-5 / Cell / Coordinated dual cleavages induced by the proteasome regulator PA28 lead to dominant MHC ligands by Dick (1996)
  12. 10.1074/jbc.273.40.25637 / J. Biol. Chem. / Contribution of proteasomal beta-subunits to the cleavage of peptide substrates analyzed with yeast mutants by Dick (1998)
  13. 10.1016/S0014-5793(98)01010-2 / FEBS Letters / Decelerated degradation of short peptides by the 20 S proteasome by Dolenc (1998)
  14. 10.1084/jem.181.4.1481 / J. Exp. Med. / Processing of major histocompatibility class I-restricted antigens in the endoplasmic reticulum by Elliott (1995)
  15. 10.1038/381166a0 / Nature / A role for the proteasome regulator PA28alpha in antigen presentation by Groettrup (1996)
  16. 10.1038/386463a0 / Nature / Structure of 20 S proteasome from yeast at 2.4 Å resolution by Groll (1997)
  17. 10.1074/jbc.272.40.25200 / J. Biol. Chem. / The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing by Heinemeyer (1997)
  18. 10.1146/annurev.biochem.67.1.425 / Annu. Rev. Biochem. / The ubiquitin system by Hershko (1998)
  19. 10.1006/jmbi.1998.2530 / J. Mol. Biol. / A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome by Holzhutter (1999)
  20. 10.1016/0092-8674(95)90021-7 / Cell / Selective protein degradation by Jentsch (1995)
  21. 10.1074/jbc.273.4.1982 / J. Biol. Chem. / Range of sizes of peptide products generated during degradation of different proteins by archaeal proteasomes by Kisselev (1998)
  22. 10.1074/jbc.274.6.3363 / J. Biol. Chem. / The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation by Kisselev (1999)
  23. 10.1016/S1097-2765(00)80341-X / Mol. Cell / Proteasome active sites allosterically regulate each other, suggesting a cyclical bite-chew mechanism for protein breakdown by Kisselev (1999)
  24. 10.1002/eji.1830250930 / Eur. J. Immunol. / Incorporation of major histocompatibility complex-encoded subunits LMP2 and LMP7 changes the quality of the 20 S proteasome polypeptide processing products independent of interferon-gamma by Kuckelkorn (1995)
  25. 10.1038/375685a0 / Nature / Inhibition of antigen processing by the internal repeat region of the Epstein-Barr virus nuclear antigen-1 by Levitskaya (1995)
  26. 10.1073/pnas.94.23.12616 / Proc. Natl Acad. Sci. USA / Inhibition of ubiquitin/proteasome-dependent protein degradation by the Gly-Ala repeat domain of the Epstein-Barr virus nuclear antigen 1 by Levitskaya (1997)
  27. 10.1084/jem.191.2.239 / J. Exp. Med. / Cytotoxic T lymphocyte epitopes of HIV-1 nef. Generation of multiple definitive major histocompatibility complex class I ligands by proteasomes by Lucchiari-Hartz (2000)
  28. 10.4049/jimmunol.163.11.5851 / J. Immunol. / Distinct proteolytic processes generate the C and N termini of MHC class I-binding peptides by Mo (1999)
  29. 10.1016/1074-7613(95)90053-5 / Immunity / Contribution of proteasome-mediated proteolysis to the hierarchy of epitopes presented by major histocompatibility complex class I molecules by Niedermann (1995)
  30. 10.1073/pnas.93.16.8572 / Proc. Natl Acad. Sci. USA / The proteolytic fragments generated by vertebrate proteasomes by Niedermann (1996)
  31. 10.1084/jem.186.2.209 / J. Exp. Med. / Potential immunocompetence of proteolytic fragments produced by proteasomes before evolution of the vertebrate immune system by Niedermann (1997)
  32. 10.1073/pnas.95.21.12504 / Proc. Natl Acad. Sci. USA / Cleavage motifs of the yeast 20 S proteasome beta subunits deduced from digests of enolase 1 by Nussbaum (1998)
  33. 10.1146/annurev.immunol.16.1.323 / Annu. Rev. Immunol. / Mechanisms of MHC class I-restricted antigen processing by Pamer (1998)
  34. 10.1016/S1074-7613(00)80099-0 / Immunity / Discrete proteolytic intermediates in the MHC class I antigen processing pathway and MHC I-dependent peptide trimming in the ER by Paz (1999)
  35. 10.1146/annurev.iy.11.040193.001241 / Annu. Rev. Immunol. / Peptides naturally presented by MHC class I molecules by Rammensee (1993)
  36. {'key': '10.1006/jmbi.2000.3683_BIB36', 'series-title': 'MHC Ligands and Peptide Motifs', 'author': 'Rammensee', 'year': '1997'} / MHC Ligands and Peptide Motifs by Rammensee (1997)
  37. 10.1146/annurev.immunol.17.1.739 / Annu. Rev. Immunol. / Degradation of cell proteins and the generation of MHC class I-presented peptides by Rock (1999)
  38. 10.1016/S0006-291X(67)80055-X / Biochem. Biophys. Res. Commun. / On the size of the active site in proteases. I. Papain by Schechter (1967)
  39. 10.1038/nm0898-939 / Nature Med. / A minimal glycine-alanine repeat prevents the interaction of ubiquitinated I kappaB alpha with the proteasome by Sharipo (1998)
  40. 10.1074/jbc.273.36.23062 / J. Biol. Chem. / Contribution of proline residue for efficient production of MHC class I ligands by proteasomes by Shimbara (1998)
  41. 10.1002/(SICI)1521-4141(199812)28:12<4029::AID-IMMU4029>3.0.CO;2-N / Eur. J. Immunol. / Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities by Stoltze (1998)
  42. 10.1006/jtbi.1995.0254 / J. Theoret. Biol. / Neural network prediction of the HIV-1 protease cleavage sites by Thompson (1995)
  43. 10.1016/S0952-7915(99)80034-X / Curr. Opin. Immunol. / Specificity of the proteasome and the TAP transporter by Uebel (1999)
Dates
Type When
Created 22 years, 11 months ago (Sept. 18, 2002, 3:24 p.m.)
Deposited 2 years, 4 months ago (April 3, 2023, 3:14 p.m.)
Indexed 3 weeks, 2 days ago (Aug. 5, 2025, 9:08 a.m.)
Issued 25 years, 3 months ago (May 1, 2000)
Published 25 years, 3 months ago (May 1, 2000)
Published Print 25 years, 3 months ago (May 1, 2000)
Funders 0

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@article{Kuttler_2000, title={An algorithm for the prediction of proteasomal cleavages}, volume={298}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.2000.3683}, DOI={10.1006/jmbi.2000.3683}, number={3}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Kuttler, Christina and Nussbaum, Alexander K and Dick, Tobias P and Rammensee, Hans-Georg and Schild, Hansjörg and Hadeler, Karl-Peter}, year={2000}, month=may, pages={417–429} }