DOI: 10.1006/jmbi.1999.3305. Realistic modeling of the denatured states of proteins allows accurate calculations of the ph dependence of protein stability

Realistic modeling of the denatured states of proteins allows accurate calculations of the ph dependence of protein stability

10.1006/jmbi.1999.3305

Crossref journal-article

Elsevier BV

Journal of Molecular Biology (78)

Bibliography

Elcock, A. H. (1999). Realistic modeling of the denatured states of proteins allows accurate calculations of the ph dependence of protein stability. Journal of Molecular Biology, 294(4), 1051â1062.

Authors 1

Adrian H Elcock (first)

References 40 Referenced 87

10.1021/bi00461a025 / Biochemistry / pH-induced denaturation of proteins by Anderson (1990)
10.1006/jmbi.1994.1301 / J. Mol. Biol. / Prediction of pH-dependent properties of proteins by Antosiewicz (1994)
10.1021/bi9601565 / Biochemistry / The determinants of pKa values in proteins by Antosiewicz (1996)
10.1021/bi00496a010 / Biochemistry / pKa’s of ionizable groups in proteins by Bashford (1990)
10.1016/0022-2836(91)90862-Z / J. Mol. Biol. / Crystal structure of a barnase-dGC complex at 1.9 Å resolution by Baudet (1991)
10.1073/pnas.88.13.5804 / Proc. Natl Acad. Sci. USA / Protonation of interacting residues in a protein by a Monte Carlo method by Beroza (1991)
10.1002/j.1460-2075.1986.tb04521.x / EMBO J. / X-ray crystal structure of the complex of human leucocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor by Bode (1986)
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{'key': '10.1006/jmbi.1999.3305_BIB9', 'series-title': 'Proteins', 'author': 'Creighton', 'year': '1993'} / Proteins by Creighton (1993)
10.1021/bi00113a006 / Biochemistry / Structural and thermodynamic consequences of burying a charged residue within the hydrophobic core of T4 lysozyme by Dao-Pin (1991)
10.1006/jmbi.1998.2159 / J. Mol. Biol. / The stability of salt bridges at high temperatures by Elcock (1998)
10.1006/jmbi.1997.0953 / J. Mol. Biol. / Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures by Gillespie (1997)
10.1002/prot.340150305 / Proteins: Struct. Funct. Genet. / Multiple-site titration and molecular modelling by Gilson (1993)
10.1002/pro.5560030206 / Protein Sci. / Do salt bridges stabilize proteins? A continuum electrostatics analysis by Hendsch (1994)
10.1126/science.7761829 / Science / Classical electrostatics in biology and chemistry by Honig (1995)
10.1107/S0108767389009177 / Acta Crystallog. sect. A / Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body/TLS model by Howlin (1989)
10.1021/bi00838a003 / Biochemistry / Titration of ribonuclease T1 by Iida (1969)
10.1021/bi00445a014 / Biochemistry / Crystal structure of guanosine-free ribonuclease T1, complexed with vanadate, suggests conformational change upon substrate binding by Kostrewa (1989)
10.1021/bi982931h / Biochemistry / pKa values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions by Kuhlman (1999)
{'key': '10.1006/jmbi.1999.3305_BIB20', 'series-title': 'CHARMM22 Parameter Set', 'author': 'MacKerell', 'year': '1995'} / CHARMM22 Parameter Set by MacKerell (1995)
10.1002/9780470125823.ch4 / Rev. Comput. Chem. / Biological applications of electrostatics calculations and Brownian dynamics simulations by Madura (1994)
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10.1021/bi00375a036 / Biochemistry / Crystal and molecular structure of the serine proteinase inhibitor CI2 from barley seeds by McPhalen (1987)
10.1021/ja00980a003 / J. Am. Chem. Soc. / Proteins as random coils. II. Hydrogen ion titration curve of ribonuclease in 6 M guanidine hydrochloride by Nozaki (1967)
10.1021/bi00029a018 / Biochemistry / pKa values of carboxyl groups in the native and denatured states of barnase by Oliveberg (1995)
10.1021/bi00462a019 / Biochemistry / pH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1 by Pace (1990)
10.1016/0301-4622(76)80005-1 / Biophys. Chem. / Thermodynamic investigations of proteins. III. Thermodynamic description of lysozyme by Pfeil (1976)
10.1107/S0108767381098619 / Acta Crystallog. sect. A / Structure of triclinic lysozyme and its Cu2+ complex at 2 Å resolution by Ramanadham (1981)
10.1096/fasebj.10.1.8566543 / FASEB J. / The denatured state (the other half of the folding equation) and its role in protein stability by Shortle (1996)
10.1021/j100058a043 / J. Phys. Chem. / Accurate calculation of hydration free energies using macroscopic solvent models by Sitkoff (1994)
10.1016/0022-2836(91)80195-Z / J. Mol. Biol. / In a staphylococcal nuclease mutant the side-chain of a lysine replacing Val 66 is fully buried in the hydrophobic core by Stites (1991)
{'key': '10.1006/jmbi.1999.3305_BIB32', 'first-page': '4724', 'article-title': 'Hydrogen bonds and the pH dependence of ovomucoid third domain stability', 'volume': '34', 'author': 'Swint-Kruse', 'year': '1995', 'journal-title': 'J. Mol. Biol.'} / J. Mol. Biol. / Hydrogen bonds and the pH dependence of ovomucoid third domain stability by Swint-Kruse (1995)
10.1006/jmbi.1995.0670 / J. Mol. Biol. / Perturbed pKa values in the denatured states of proteins by Tan (1995)
10.1016/S0065-3233(08)60241-7 / Advan. Protein Chem. / Protein denaturation. Part C by Tanford (1970)
10.1021/ja01601a036 / J. Am. Chem. Soc. / Hydrogen ion equilibria of ribonuclease by Tanford (1956)
10.1021/ja01577a001 / J. Am. Chem. Soc. / Theory of protein titration curves. I. General equations for impenetrable spheres by Tanford (1957)
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10.1006/jmbi.1994.1258 / J. Mol. Biol. / Structural origins of pH and ionic strength effects on protein stability by Yang (1994)

Dates

Type	When
Created	22 years, 10 months ago (Oct. 7, 2002, 12:17 p.m.)
Deposited	5 years, 8 months ago (Dec. 17, 2019, 11:04 a.m.)
Indexed	1 year, 5 months ago (March 4, 2024, 4 p.m.)
Issued	25 years, 8 months ago (Dec. 1, 1999)
Published	25 years, 8 months ago (Dec. 1, 1999)
Published Print	25 years, 8 months ago (Dec. 1, 1999)

Funders 0

None

BibTeX

@article{Elcock_1999, title={Realistic modeling of the denatured states of proteins allows accurate calculations of the ph dependence of protein stability}, volume={294}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.1999.3305}, DOI={10.1006/jmbi.1999.3305}, number={4}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Elcock, Adrian H}, year={1999}, month=dec, pages={1051–1062} }

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