DOI: 10.1006/jmbi.1998.2493. Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit

Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit

10.1006/jmbi.1998.2493

Crossref journal-article

Elsevier BV

Journal of Molecular Biology (78)

Bibliography

Wang, R., Alexander, R. W., VanLoock, M., Vladimirov, S., Bukhtiyarov, Y., Harvey, S. C., & Cooperman, B. S. (1999). Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit. Journal of Molecular Biology, 286(2), 521â540.

Authors 7

Ruo Wang (first)
Rebecca W Alexander (additional)
Margaret VanLoock (additional)
Serguei Vladimirov (additional)
Yuri Bukhtiyarov (additional)
Stephen C Harvey (additional)
Barry S Cooperman (additional)

References 57 Referenced 23

10.1021/bi00206a014 / Biochemistry / Ribosomal components neighboring the conserved 518-533 loop of 16 S ribosomal RNA in 30 S subunits by Alexander (1994)
10.1021/bi00140a033 / Biochemistry / The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences by Bhangu (1992)
10.1021/bi00176a040 / Biochemistry / Arrangement of messenger RNA on Escherichia coli ribosomes with respect to 10 16 S rRNA cross-linking sites by Bhangu (1994)
10.1111/j.1432-1033.1995.0365h.x / Eur. J. Biochem. / The structure of ribosomal RNA by Brimacombe (1995)
10.1021/bi00474a024 / Biochemistry / Single protein omission reconstitution studies of tetracycline binding to the 30 S subunit of Escherichia coli ribosomes by Buck (1990)
10.1016/0022-2836(88)90334-8 / J. Mol. Biol. / Positions of S2, S13, S16, S17, S19 and S21 in the 30 S ribosomal subunit of Escherichia coli by Capel (1988)
10.1002/j.1460-2075.1991.tb07803.x / EMBO J. / The location of mRNA in the ribosomal 30 S initiation complex; site-directed cross-linking of mRNA analogues carrying several photoreactive labels simultaneously on either side of the AUG start codon by Dontsova (1991)
{'key': '10.1006/jmbi.1998.2493_BIB9', 'first-page': '851', 'article-title': 'Computational methods for defining the allowed conformational space of 16 S rRNA based on chemical footprinting data', 'volume': '2', 'author': 'Fink', 'year': '1996', 'journal-title': 'RNA'} / RNA / Computational methods for defining the allowed conformational space of 16 S rRNA based on chemical footprinting data by Fink (1996)
10.1016/S0065-3233(08)60295-8 / Advan. Protein Chem. / Ribosomal proteins by Giri (1984)
10.1093/nar/16.3.815 / Nucl. Acids Res. / RNA-protein cross-linking in Escherichia coli 50S ribosomal subunits; determination of sites on 23S RNA that are cross-linked to proteins L2, L4, L24 and L27 by treatment with 2-iminothiolane by Gulle (1988)
10.1128/mr.58.1.10-26.1994 / Microbiol. Rev. / Lessons from an evolving rRNA by Gutell (1994)
10.1093/nar/17.4.1475 / Nucl. Acids Res. / New RNA-protein crosslinks in domains 1 and 2 of E. coli 30 S ribosomal subunits obtained by means of an intrinsic photoaffinity probe by Hajnsdorf (1989)
10.1021/bi00284a002 / Biochemistry / Synthesis of a cleavable dinucleotide photoaffinity probe of ribonucleic acid polymerase by Hanna (1983)
10.1002/(SICI)1096-987X(199906)20:8<813::AID-JCC7>3.0.CO;2-I / J. Comput. Chem. / A program for analyzing knots represented by polygonal paths by Harris (1999)
10.1126/science.272.5268.1659 / Science / Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5 by Heilek (1996)
10.1016/S0021-9258(19)43564-3 / J. Biol. Chem. / Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components by Held (1973)
10.1016/S0021-9258(19)42644-6 / J. Biol. Chem. / Assembly mapping of 30 S ribosomal proteins from Escherichia coli by Held (1974)
10.1021/jo00302a039 / J. Org. Chem. / The automated synthesis of sulfur-containing oligodeoxyribonucleotides using 3H-1,2-benzodithiol-3-one 1,1-dioxide as a sulfur-transfer reagent by Iyer (1990)
10.1074/jbc.270.21.12794 / J. Biol. Chem. / Distribution of cross-links between messenger RNA analogs and 16 S ribosomal RNA in Escherichia coli 70 S ribosomes made under equilibrium conditions and their response to transfer RNA binding by Juzumiene (1995)
{'key': '10.1006/jmbi.1998.2493_BIB22', 'first-page': '772', 'article-title': 'From standby to decoding site - adjustment of the messenger RNA on the 30 S ribosomal-subunit under the influence of the initiation-factors', 'volume': '1', 'author': 'La Teana', 'year': '1995', 'journal-title': 'RNA'} / RNA / From standby to decoding site - adjustment of the messenger RNA on the 30 S ribosomal-subunit under the influence of the initiation-factors by La Teana (1995)
10.1021/bi00285a029 / Biochemistry / Cross-links between ribosomal proteins of 30 S subunits in 70 S tight couples and in 30 S subunits by Lambert (1983)
10.1016/S0021-9258(20)88254-4 / J. Biol. Chem. / Localization of the site of cleavage of ribosomal-RNA by colicin-E3 - placement on the small ribosomal-subunit by electron-microscopy of antibody-complementary oligodeoxynucleotide complexes by Lasater (1989)
10.1093/nar/18.3.477 / Nucl. Acids Res. / Localization of an oligodeoxynucleotide complementing 16 S ribosomal RNA residues 520-531 on the small subunit ofEscherichia coli ribosomes by Lasater (1990)
10.1006/jmbi.1996.0497 / J. Mol. Biol. / Three-dimensional reconstruction of the Escherichia coli 30 S subunit in ice by Lata (1996)
10.1006/jmbi.1994.1448 / J. Mol. Biol. / A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit by Malhotra (1994)
10.1016/S0006-3495(94)80972-5 / Biophys. J. / Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques by Malhotra (1994)
10.1016/S0968-0896(97)00053-9 / Bioorg. Med. Chem. / Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core by Masquida (1997)
10.1016/0300-9084(91)90132-K / Biochimie / Localization of a segment of 16 S RNA on the surface of the small ribosomal subunit by immune electron microscopy of complementary oligodeoxynucleotides by McWilliams (1991)
10.1016/0022-2836(86)90143-9 / J. Mol. Biol. / Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA by Moazed (1986)
10.1006/jmbi.1997.1210 / J. Mol. Biol. / A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. 1. Fitting the RNA to a 3D electron microscopic map at 20 angstrom by Mueller (1997)
10.1021/bi00236a014 / Biochemistry / A photolabile oligodeoxyribonucleotide probe of the peptidyltransferase center by Muralikrishna (1991)
10.1021/bi00172a015 / Biochemistry / A photolabile oligodeoxyribonucleotide probe of the decoding site in the small subunit of the Escherichia coli ribosome by Muralikrishna (1994)
10.1139/o95-107 / Biochem. Cell Biol. / Structure and function of ribosomal RNA by Noller (1995)
10.1016/0022-2836(90)90082-W / J. Mol. Biol. / DNA-hybridization electron microscopy. Localization of five regions of 16 S rRNA on the surface of 30 S ribosomal subunits by Oakes (1990)
10.1073/pnas.83.2.275 / Proc. Natl Acad. Sci. USA / DNA hybridization electron microscopy by Oakes (1986)
10.1093/nar/20.16.4221 / Nucl. Acids Res. / A ribosomal ambiguity mutation in the 530 loop of E. coli 16 S rRNA by O’Connor (1992)
10.1016/S0021-9258(18)68164-5 / J. Biol. Chem. / Messenger RNA orientation on the ribosome. Placement by electron microscopy of antibody-complementary oligodeoxynucleotide com plexes by Olson (1988)
10.1007/BF00329777 / Mol. Gen. Genet. / Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity by Piepersberg (1975)
10.1007/BF00269419 / Mol. Gen. Genet. / Genetic position and amino acid replacements of several mutations in ribosomal protein S5 from Escherichia coli by Piepersberg (1975)
{'key': '10.1006/jmbi.1998.2493_BIB42', 'first-page': '194', 'article-title': 'Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA', 'volume': '1', 'author': 'Powers', 'year': '1995', 'journal-title': 'RNA'} / RNA / Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA by Powers (1995)
10.1002/j.1460-2075.1991.tb07755.x / EMBO J. / The path of mRNA through the Escherichia coli ribosome; site-directed cross-linking of mRNA analogues carrying a photoreactive label at various points 3′ to the decoding site by Rinke-Appel (1991)
10.1093/nar/22.15.3018 / Nucl. Acids Res. / Contacts between 16 S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study by Rinke-Appel (1994)
10.1073/pnas.91.17.7884 / Proc. Natl Acad. Sci. USA / Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA by Samaha (1994)
{'key': '10.1006/jmbi.1998.2493_BIB46', 'first-page': '464', 'article-title': 'The path of mRNA through the bacterial ribosome', 'volume': '3', 'author': 'Sergiev', 'year': '1997', 'journal-title': 'RNA'} / RNA / The path of mRNA through the bacterial ribosome by Sergiev (1997)
10.1093/nar/17.23.9889 / Nucl. Acids Res. / Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30 S ribosomal components that can be cross-linked to the mRNA at various points 5′ with respect to the decoding site by Stade (1989)
10.1016/0022-2836(86)90467-5 / J. Mol. Biol. / Localization of the binding site for protein S4 on 16 S ribosomal RNA by chemical and enzymatic probing and primer extension by Stern (1986)
10.1126/science.2658053 / Science / RNA-protein interactions in 30 S ribosomal subunits by Stern (1989)
10.1002/jcc.540140410 / J. Comput. Chem. / YAMMP by Tan (1993)
10.1016/S0021-9258(18)34145-0 / J. Biol. Chem. / Ribosome structure by Trempe (1982)
10.1074/jbc.272.23.14547 / J. Biol. Chem. / Identification and sequence analysis of contact sites between ribosomal proteins and rRNA in Escherichia coli 30 S subunits by a new approach using matrix-assisted laser desorption ionization mass spectrometry combined with N-terminal microsequencing by Urlaub (1997)
{'key': '10.1006/jmbi.1998.2493_BIB54', 'first-page': 'A1093', 'article-title': 'Probing the 530 loop of the Escherichia coli small ribosomal-subunit with short oligodeoxynucleotides', 'volume': '7', 'author': 'Van Waes', 'year': '1993', 'journal-title': 'FASEB J.'} / FASEB J. / Probing the 530 loop of the Escherichia coli small ribosomal-subunit with short oligodeoxynucleotides by Van Waes (1993)
{'key': '10.1006/jmbi.1998.2493_BIB55', 'article-title': 'To knot or not to knot? Examination of 16S ribosomal RNA models', 'author': 'VanLoock', 'year': '1999', 'journal-title': 'Struct. Dynam.'} / Struct. Dynam. / To knot or not to knot? Examination of 16S ribosomal RNA models by VanLoock (1999)
10.1016/S0969-2126(97)00269-4 / Structure / The structure of ribosomal protein S7 at 1.9 angstrom resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids by Wimberly (1997)
10.1016/0076-6879(74)30042-0 / Methods Enzymol. / The inactivation and reactivation of Escherichia coli ribosomes by Zamir (1974)
10.1002/j.1460-2075.1992.tb05383.x / EMBO J. / Three widely separated positions in the 16 S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues by Donstova (1992)
{'key': '10.1006/jmbi.1998.2493_BIB19', 'series-title': 'Proceedings of the Third Annual Meeting of the RNA Society', 'article-title': 'Investigation of the structural environment for the E. coli 30S rRNA decoding region', 'author': 'Hennelly', 'year': '1998'} / Proceedings of the Third Annual Meeting of the RNA Society / Investigation of the structural environment for the E. coli 30S rRNA decoding region by Hennelly (1998)
10.1016/0022-2836(87)90241-5 / J. Mol. Biol. / Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences by Trifonov (1987)

Dates

Type	When
Created	22 years, 11 months ago (Sept. 18, 2002, 3:24 p.m.)
Deposited	2 years, 8 months ago (Dec. 23, 2022, 9:21 a.m.)
Indexed	1 month, 3 weeks ago (July 11, 2025, 6:34 a.m.)
Issued	26 years, 7 months ago (Feb. 1, 1999)
Published	26 years, 7 months ago (Feb. 1, 1999)
Published Print	26 years, 7 months ago (Feb. 1, 1999)

Funders 0

None

BibTeX

@article{Wang_1999, title={Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit}, volume={286}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.1998.2493}, DOI={10.1006/jmbi.1998.2493}, number={2}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Wang, Ruo and Alexander, Rebecca W and VanLoock, Margaret and Vladimirov, Serguei and Bukhtiyarov, Yuri and Harvey, Stephen C and Cooperman, Barry S}, year={1999}, month=feb, pages={521–540} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        7,
        11
      ]
    ],
    "date-time": "2025-07-11T10:34:04Z",
    "timestamp": 1752230044737
  },
  "reference-count": 57,
  "publisher": "Elsevier BV",
  "issue": "2",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            1999,
            2,
            1
          ]
        ],
        "date-time": "1999-02-01T00:00:00Z",
        "timestamp": 917827200000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    },
    {
      "start": {
        "date-parts": [
          [
            2003,
            5,
            25
          ]
        ],
        "date-time": "2003-05-25T00:00:00Z",
        "timestamp": 1053820800000
      },
      "content-version": "vor",
      "delay-in-days": 1574,
      "URL": "http://creativecommons.org/licenses/by-nc-nd/4.0/"
    }
  ],
  "content-domain": {
    "domain": [
      "elsevier.com",
      "sciencedirect.com"
    ],
    "crossmark-restriction": true
  },
  "published-print": {
    "date-parts": [
      [
        1999,
        2
      ]
    ]
  },
  "DOI": "10.1006/jmbi.1998.2493",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2002,
        9,
        18
      ]
    ],
    "date-time": "2002-09-18T19:24:54Z",
    "timestamp": 1032377094000
  },
  "page": "521-540",
  "update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy",
  "source": "Crossref",
  "is-referenced-by-count": 23,
  "title": "Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit",
  "prefix": "10.1006",
  "volume": "286",
  "author": [
    {
      "given": "Ruo",
      "family": "Wang",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Rebecca W",
      "family": "Alexander",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Margaret",
      "family": "VanLoock",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Serguei",
      "family": "Vladimirov",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Yuri",
      "family": "Bukhtiyarov",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Stephen C",
      "family": "Harvey",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Barry S",
      "family": "Cooperman",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1006/jmbi.1998.2493_BIB1",
      "doi-asserted-by": "crossref",
      "first-page": "12109",
      "DOI": "10.1021/bi00206a014",
      "article-title": "Ribosomal components neighboring the conserved 518-533 loop of 16 S ribosomal RNA in 30 S subunits",
      "volume": "33",
      "author": "Alexander",
      "year": "1994",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB2",
      "doi-asserted-by": "crossref",
      "first-page": "5937",
      "DOI": "10.1021/bi00140a033",
      "article-title": "The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences",
      "volume": "31",
      "author": "Bhangu",
      "year": "1992",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB3",
      "doi-asserted-by": "crossref",
      "first-page": "3063",
      "DOI": "10.1021/bi00176a040",
      "article-title": "Arrangement of messenger RNA on Escherichia coli ribosomes with respect to 10 16 S rRNA cross-linking sites",
      "volume": "33",
      "author": "Bhangu",
      "year": "1994",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB4",
      "doi-asserted-by": "crossref",
      "first-page": "365",
      "DOI": "10.1111/j.1432-1033.1995.0365h.x",
      "article-title": "The structure of ribosomal RNA",
      "volume": "230",
      "author": "Brimacombe",
      "year": "1995",
      "journal-title": "Eur. J. Biochem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB5",
      "doi-asserted-by": "crossref",
      "first-page": "5374",
      "DOI": "10.1021/bi00474a024",
      "article-title": "Single protein omission reconstitution studies of tetracycline binding to the 30 S subunit of Escherichia coli ribosomes",
      "volume": "22",
      "author": "Buck",
      "year": "1990",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB6",
      "doi-asserted-by": "crossref",
      "first-page": "65",
      "DOI": "10.1016/0022-2836(88)90334-8",
      "article-title": "Positions of S2, S13, S16, S17, S19 and S21 in the 30 S ribosomal subunit of Escherichia coli",
      "volume": "200",
      "author": "Capel",
      "year": "1988",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB7",
      "doi-asserted-by": "crossref",
      "first-page": "2613",
      "DOI": "10.1002/j.1460-2075.1991.tb07803.x",
      "article-title": "The location of mRNA in the ribosomal 30 S initiation complex; site-directed cross-linking of mRNA analogues carrying several photoreactive labels simultaneously on either side of the AUG start codon",
      "volume": "9",
      "author": "Dontsova",
      "year": "1991",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB9",
      "first-page": "851",
      "article-title": "Computational methods for defining the allowed conformational space of 16 S rRNA based on chemical footprinting data",
      "volume": "2",
      "author": "Fink",
      "year": "1996",
      "journal-title": "RNA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB10",
      "doi-asserted-by": "crossref",
      "first-page": "1",
      "DOI": "10.1016/S0065-3233(08)60295-8",
      "article-title": "Ribosomal proteins",
      "volume": "36",
      "author": "Giri",
      "year": "1984",
      "journal-title": "Advan. Protein Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB11",
      "doi-asserted-by": "crossref",
      "first-page": "815",
      "DOI": "10.1093/nar/16.3.815",
      "article-title": "RNA-protein cross-linking in Escherichia coli 50S ribosomal subunits; determination of sites on 23S RNA that are cross-linked to proteins L2, L4, L24 and L27 by treatment with 2-iminothiolane",
      "volume": "16",
      "author": "Gulle",
      "year": "1988",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB12",
      "doi-asserted-by": "crossref",
      "first-page": "10",
      "DOI": "10.1128/mr.58.1.10-26.1994",
      "article-title": "Lessons from an evolving rRNA",
      "volume": "58",
      "author": "Gutell",
      "year": "1994",
      "journal-title": "Microbiol. Rev."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB13",
      "doi-asserted-by": "crossref",
      "first-page": "1475",
      "DOI": "10.1093/nar/17.4.1475",
      "article-title": "New RNA-protein crosslinks in domains 1 and 2 of E. coli 30 S ribosomal subunits obtained by means of an intrinsic photoaffinity probe",
      "volume": "17",
      "author": "Hajnsdorf",
      "year": "1989",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB14",
      "doi-asserted-by": "crossref",
      "first-page": "3545",
      "DOI": "10.1021/bi00284a002",
      "article-title": "Synthesis of a cleavable dinucleotide photoaffinity probe of ribonucleic acid polymerase",
      "volume": "22",
      "author": "Hanna",
      "year": "1983",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB15",
      "doi-asserted-by": "crossref",
      "DOI": "10.1002/(SICI)1096-987X(199906)20:8<813::AID-JCC7>3.0.CO;2-I",
      "article-title": "A program for analyzing knots represented by polygonal paths",
      "author": "Harris",
      "year": "1999",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB16",
      "doi-asserted-by": "crossref",
      "first-page": "1659",
      "DOI": "10.1126/science.272.5268.1659",
      "article-title": "Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5",
      "volume": "272",
      "author": "Heilek",
      "year": "1996",
      "journal-title": "Science"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB17",
      "doi-asserted-by": "crossref",
      "first-page": "5720",
      "DOI": "10.1016/S0021-9258(19)43564-3",
      "article-title": "Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components",
      "volume": "248",
      "author": "Held",
      "year": "1973",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB18",
      "doi-asserted-by": "crossref",
      "first-page": "3103",
      "DOI": "10.1016/S0021-9258(19)42644-6",
      "article-title": "Assembly mapping of 30 S ribosomal proteins from Escherichia coli",
      "volume": "249",
      "author": "Held",
      "year": "1974",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB20",
      "doi-asserted-by": "crossref",
      "first-page": "4693",
      "DOI": "10.1021/jo00302a039",
      "article-title": "The automated synthesis of sulfur-containing oligodeoxyribonucleotides using 3H-1,2-benzodithiol-3-one 1,1-dioxide as a sulfur-transfer reagent",
      "volume": "5",
      "author": "Iyer",
      "year": "1990",
      "journal-title": "J. Org. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB21",
      "doi-asserted-by": "crossref",
      "first-page": "12794",
      "DOI": "10.1074/jbc.270.21.12794",
      "article-title": "Distribution of cross-links between messenger RNA analogs and 16 S ribosomal RNA in Escherichia coli 70 S ribosomes made under equilibrium conditions and their response to transfer RNA binding",
      "volume": "270",
      "author": "Juzumiene",
      "year": "1995",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB22",
      "first-page": "772",
      "article-title": "From standby to decoding site - adjustment of the messenger RNA on the 30 S ribosomal-subunit under the influence of the initiation-factors",
      "volume": "1",
      "author": "La Teana",
      "year": "1995",
      "journal-title": "RNA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB23",
      "doi-asserted-by": "crossref",
      "first-page": "3913",
      "DOI": "10.1021/bi00285a029",
      "article-title": "Cross-links between ribosomal proteins of 30 S subunits in 70 S tight couples and in 30 S subunits",
      "volume": "22",
      "author": "Lambert",
      "year": "1983",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB24",
      "doi-asserted-by": "crossref",
      "first-page": "21798",
      "DOI": "10.1016/S0021-9258(20)88254-4",
      "article-title": "Localization of the site of cleavage of ribosomal-RNA by colicin-E3 - placement on the small ribosomal-subunit by electron-microscopy of antibody-complementary oligodeoxynucleotide complexes",
      "volume": "264",
      "author": "Lasater",
      "year": "1989",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB25",
      "doi-asserted-by": "crossref",
      "first-page": "477",
      "DOI": "10.1093/nar/18.3.477",
      "article-title": "Localization of an oligodeoxynucleotide complementing 16 S ribosomal RNA residues 520-531 on the small subunit ofEscherichia coli ribosomes",
      "volume": "18",
      "author": "Lasater",
      "year": "1990",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB26",
      "doi-asserted-by": "crossref",
      "first-page": "43",
      "DOI": "10.1006/jmbi.1996.0497",
      "article-title": "Three-dimensional reconstruction of the Escherichia coli 30 S subunit in ice",
      "volume": "262",
      "author": "Lata",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB27",
      "doi-asserted-by": "crossref",
      "first-page": "308",
      "DOI": "10.1006/jmbi.1994.1448",
      "article-title": "A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit",
      "volume": "240",
      "author": "Malhotra",
      "year": "1994",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB28",
      "doi-asserted-by": "crossref",
      "first-page": "1777",
      "DOI": "10.1016/S0006-3495(94)80972-5",
      "article-title": "Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques",
      "volume": "66",
      "author": "Malhotra",
      "year": "1994",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB29",
      "doi-asserted-by": "crossref",
      "first-page": "1021",
      "DOI": "10.1016/S0968-0896(97)00053-9",
      "article-title": "Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core",
      "volume": "5",
      "author": "Masquida",
      "year": "1997",
      "journal-title": "Bioorg. Med. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB30",
      "doi-asserted-by": "crossref",
      "first-page": "911",
      "DOI": "10.1016/0300-9084(91)90132-K",
      "article-title": "Localization of a segment of 16 S RNA on the surface of the small ribosomal subunit by immune electron microscopy of complementary oligodeoxynucleotides",
      "volume": "73",
      "author": "McWilliams",
      "year": "1991",
      "journal-title": "Biochimie"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB31",
      "doi-asserted-by": "crossref",
      "first-page": "483",
      "DOI": "10.1016/0022-2836(86)90143-9",
      "article-title": "Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA",
      "volume": "191",
      "author": "Moazed",
      "year": "1986",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB32",
      "doi-asserted-by": "crossref",
      "first-page": "524",
      "DOI": "10.1006/jmbi.1997.1210",
      "article-title": "A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. 1. Fitting the RNA to a 3D electron microscopic map at 20 angstrom",
      "volume": "271",
      "author": "Mueller",
      "year": "1997",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB33",
      "doi-asserted-by": "crossref",
      "first-page": "5421",
      "DOI": "10.1021/bi00236a014",
      "article-title": "A photolabile oligodeoxyribonucleotide probe of the peptidyltransferase center",
      "volume": "30",
      "author": "Muralikrishna",
      "year": "1991",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB34",
      "doi-asserted-by": "crossref",
      "first-page": "1392",
      "DOI": "10.1021/bi00172a015",
      "article-title": "A photolabile oligodeoxyribonucleotide probe of the decoding site in the small subunit of the Escherichia coli ribosome",
      "volume": "33",
      "author": "Muralikrishna",
      "year": "1994",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB35",
      "doi-asserted-by": "crossref",
      "first-page": "997",
      "DOI": "10.1139/o95-107",
      "article-title": "Structure and function of ribosomal RNA",
      "volume": "73",
      "author": "Noller",
      "year": "1995",
      "journal-title": "Biochem. Cell Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB36",
      "doi-asserted-by": "crossref",
      "first-page": "897",
      "DOI": "10.1016/0022-2836(90)90082-W",
      "article-title": "DNA-hybridization electron microscopy. Localization of five regions of 16 S rRNA on the surface of 30 S ribosomal subunits",
      "volume": "211",
      "author": "Oakes",
      "year": "1990",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB37",
      "doi-asserted-by": "crossref",
      "first-page": "275",
      "DOI": "10.1073/pnas.83.2.275",
      "article-title": "DNA hybridization electron microscopy",
      "volume": "83",
      "author": "Oakes",
      "year": "1986",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB38",
      "doi-asserted-by": "crossref",
      "first-page": "4221",
      "DOI": "10.1093/nar/20.16.4221",
      "article-title": "A ribosomal ambiguity mutation in the 530 loop of E. coli 16 S rRNA",
      "volume": "20",
      "author": "O\u2019Connor",
      "year": "1992",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB39",
      "doi-asserted-by": "crossref",
      "first-page": "15196",
      "DOI": "10.1016/S0021-9258(18)68164-5",
      "article-title": "Messenger RNA orientation on the ribosome. Placement by electron microscopy of antibody-complementary oligodeoxynucleotide com plexes",
      "volume": "263",
      "author": "Olson",
      "year": "1988",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB40",
      "doi-asserted-by": "crossref",
      "first-page": "91",
      "DOI": "10.1007/BF00329777",
      "article-title": "Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity",
      "volume": "140",
      "author": "Piepersberg",
      "year": "1975",
      "journal-title": "Mol. Gen. Genet."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB41",
      "doi-asserted-by": "crossref",
      "first-page": "43",
      "DOI": "10.1007/BF00269419",
      "article-title": "Genetic position and amino acid replacements of several mutations in ribosomal protein S5 from Escherichia coli",
      "volume": "143",
      "author": "Piepersberg",
      "year": "1975",
      "journal-title": "Mol. Gen. Genet."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB42",
      "first-page": "194",
      "article-title": "Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA",
      "volume": "1",
      "author": "Powers",
      "year": "1995",
      "journal-title": "RNA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB43",
      "doi-asserted-by": "crossref",
      "first-page": "2195",
      "DOI": "10.1002/j.1460-2075.1991.tb07755.x",
      "article-title": "The path of mRNA through the Escherichia coli ribosome; site-directed cross-linking of mRNA analogues carrying a photoreactive label at various points 3\u2032 to the decoding site",
      "volume": "8",
      "author": "Rinke-Appel",
      "year": "1991",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB44",
      "doi-asserted-by": "crossref",
      "first-page": "3018",
      "DOI": "10.1093/nar/22.15.3018",
      "article-title": "Contacts between 16 S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study",
      "volume": "22",
      "author": "Rinke-Appel",
      "year": "1994",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB45",
      "doi-asserted-by": "crossref",
      "first-page": "7884",
      "DOI": "10.1073/pnas.91.17.7884",
      "article-title": "Independent in vitro assembly of a ribonucleoprotein particle containing the 3\u2032 domain of 16 S rRNA",
      "volume": "91",
      "author": "Samaha",
      "year": "1994",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB46",
      "first-page": "464",
      "article-title": "The path of mRNA through the bacterial ribosome",
      "volume": "3",
      "author": "Sergiev",
      "year": "1997",
      "journal-title": "RNA"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB47",
      "doi-asserted-by": "crossref",
      "first-page": "9889",
      "DOI": "10.1093/nar/17.23.9889",
      "article-title": "Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30 S ribosomal components that can be cross-linked to the mRNA at various points 5\u2032 with respect to the decoding site",
      "volume": "17",
      "author": "Stade",
      "year": "1989",
      "journal-title": "Nucl. Acids Res."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB48",
      "doi-asserted-by": "crossref",
      "first-page": "101",
      "DOI": "10.1016/0022-2836(86)90467-5",
      "article-title": "Localization of the binding site for protein S4 on 16 S ribosomal RNA by chemical and enzymatic probing and primer extension",
      "volume": "192",
      "author": "Stern",
      "year": "1986",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB49",
      "doi-asserted-by": "crossref",
      "first-page": "783",
      "DOI": "10.1126/science.2658053",
      "article-title": "RNA-protein interactions in 30 S ribosomal subunits",
      "volume": "244",
      "author": "Stern",
      "year": "1989",
      "journal-title": "Science"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB50",
      "doi-asserted-by": "crossref",
      "first-page": "455",
      "DOI": "10.1002/jcc.540140410",
      "article-title": "YAMMP",
      "volume": "14",
      "author": "Tan",
      "year": "1993",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB51",
      "doi-asserted-by": "crossref",
      "first-page": "9822",
      "DOI": "10.1016/S0021-9258(18)34145-0",
      "article-title": "Ribosome structure",
      "volume": "257",
      "author": "Trempe",
      "year": "1982",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB53",
      "doi-asserted-by": "crossref",
      "first-page": "14547",
      "DOI": "10.1074/jbc.272.23.14547",
      "article-title": "Identification and sequence analysis of contact sites between ribosomal proteins and rRNA in Escherichia coli 30 S subunits by a new approach using matrix-assisted laser desorption ionization mass spectrometry combined with N-terminal microsequencing",
      "volume": "272",
      "author": "Urlaub",
      "year": "1997",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB54",
      "first-page": "A1093",
      "article-title": "Probing the 530 loop of the Escherichia coli small ribosomal-subunit with short oligodeoxynucleotides",
      "volume": "7",
      "author": "Van Waes",
      "year": "1993",
      "journal-title": "FASEB J."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB55",
      "article-title": "To knot or not to knot? Examination of 16S ribosomal RNA models",
      "author": "VanLoock",
      "year": "1999",
      "journal-title": "Struct. Dynam."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB56",
      "doi-asserted-by": "crossref",
      "first-page": "1187",
      "DOI": "10.1016/S0969-2126(97)00269-4",
      "article-title": "The structure of ribosomal protein S7 at 1.9 angstrom resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids",
      "volume": "5",
      "author": "Wimberly",
      "year": "1997",
      "journal-title": "Structure"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB57",
      "doi-asserted-by": "crossref",
      "first-page": "406",
      "DOI": "10.1016/0076-6879(74)30042-0",
      "article-title": "The inactivation and reactivation of Escherichia coli ribosomes",
      "volume": "30",
      "author": "Zamir",
      "year": "1974",
      "journal-title": "Methods Enzymol."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB8",
      "doi-asserted-by": "crossref",
      "first-page": "3105",
      "DOI": "10.1002/j.1460-2075.1992.tb05383.x",
      "article-title": "Three widely separated positions in the 16 S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues",
      "volume": "11",
      "author": "Donstova",
      "year": "1992",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB19",
      "series-title": "Proceedings of the Third Annual Meeting of the RNA Society",
      "article-title": "Investigation of the structural environment for the E. coli 30S rRNA decoding region",
      "author": "Hennelly",
      "year": "1998"
    },
    {
      "key": "10.1006/jmbi.1998.2493_BIB52",
      "doi-asserted-by": "crossref",
      "first-page": "643",
      "DOI": "10.1016/0022-2836(87)90241-5",
      "article-title": "Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences",
      "volume": "194",
      "author": "Trifonov",
      "year": "1987",
      "journal-title": "J. Mol. Biol."
    }
  ],
  "container-title": "Journal of Molecular Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0022283698924937?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0022283698924937?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2022,
        12,
        23
      ]
    ],
    "date-time": "2022-12-23T14:21:08Z",
    "timestamp": 1671805268000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S0022283698924937"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        1999,
        2
      ]
    ]
  },
  "references-count": 57,
  "journal-issue": {
    "issue": "2",
    "published-print": {
      "date-parts": [
        [
          1999,
          2
        ]
      ]
    }
  },
  "alternative-id": [
    "S0022283698924937"
  ],
  "URL": "http://dx.doi.org/10.1006/jmbi.1998.2493",
  "relation": {},
  "ISSN": [
    "0022-2836"
  ],
  "subject": [],
  "container-title-short": "Journal of Molecular Biology",
  "published": {
    "date-parts": [
      [
        1999,
        2
      ]
    ]
  },
  "assertion": [
    {
      "value": "Elsevier",
      "name": "publisher",
      "label": "This article is maintained by"
    },
    {
      "value": "Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit",
      "name": "articletitle",
      "label": "Article Title"
    },
    {
      "value": "Journal of Molecular Biology",
      "name": "journaltitle",
      "label": "Journal Title"
    },
    {
      "value": "https://doi.org/10.1006/jmbi.1998.2493",
      "name": "articlelink",
      "label": "CrossRef DOI link to publisher maintained version"
    },
    {
      "value": "converted-article",
      "name": "content_type",
      "label": "Content Type"
    },
    {
      "value": "Copyright \u00a9 1999 Academic Press. All rights reserved.",
      "name": "copyright",
      "label": "Copyright"
    }
  ]
}