DOI: 10.1006/jmbi.1998.2421. Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code 1 1Edited by P. E. Wright

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code 1 1Edited by P. E. Wright

10.1006/jmbi.1998.2421

Crossref journal-article

Elsevier BV

Journal of Molecular Biology (78)

Bibliography

Wolfe, S. A., Greisman, H. A., Ramm, E. I., & Pabo, C. O. (1999). Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code 1 1Edited by P. E. Wright. Journal of Molecular Biology, 285(5), 1917â1934.

Authors 4

Scot A. Wolfe (first)
Harvey A. Greisman (additional)
Elizabeth I. Ramm (additional)
Carl O. Pabo (additional)

References 34 Referenced 145

10.1126/science.271.5252.1081 / Science / The galvanization of biology by Berg (1996)
10.1093/nar/26.2.554 / Nucl. Acids Res. / End effects in DNA recognition by zinc finger arrays by Choo (1998)
10.1073/pnas.91.23.11168 / Proc. Natl Acad. Sci. USA / Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions by Choo (1994)
10.1073/pnas.91.23.11163 / Proc. Natl Acad. Sci. USA / Toward a code for the interactions of zinc fingers with DNA by Choo (1994)
10.1016/S0959-440X(97)80015-2 / Curr. Opin. Struct. Biol. / Physical basis of a protein-DNA recognition code by Choo (1997)
10.1038/372642a0 / Nature / In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence by Choo (1994)
10.1073/pnas.85.21.7857 / Proc. Natl Acad. Sci. USA / A gene activated in mouse 3T3 cells by serum growth factors encodes a protein with “zinc finger” sequences by Christy (1988)
10.1016/S0014-5793(97)01257-X / FEBS Letters / Synthesis of a new zinc finger peptide; comparison of its “code” deduced and “CASTing” derived binding sites by Corbi (1997)
10.1002/prot.340120202 / Proteins: Struct. Funct. Genet / Redesigning the DNA-binding specificity of a zinc finger protein by Desjarlais (1992)
10.1073/pnas.89.16.7345 / Proc. Natl Acad. Sci. USA / Toward rules relating zinc finger protein sequences and DNA binding site preferences by Desjarlais (1992)
10.1073/pnas.90.6.2256 / Proc. Natl Acad. Sci. USA / Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins by Desjarlais (1993)
10.1073/pnas.91.23.11099 / Proc. Natl Acad. Sci. USA / Length-encoded multiplex binding site determination by Desjarlais (1994)
10.1016/S0969-2126(96)00125-6 / Structure / Zif268 protein-DNA complex refined at 1.6 Å by Elrod-Erickson (1996)
10.1016/S0969-2126(98)00047-1 / Structure / High-resolution structures of variant Zif268-DNA complexes by Elrod-Erickson (1998)
10.1016/0022-2836(92)90952-G / J. Mol. Biol. / Sequence-specific DNA binding by a two zinc-finger peptide from the Drosophila melanogaster Tramtrack protein by Fairall (1992)
10.1038/366483a0 / Nature / The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc finger/DNA recognition by Fairall (1993)
10.1126/science.1290524 / Science / Sequence discrimination by alternatively spliced isoforms of a DNA binding zinc finger domain by Gogos (1992)
10.1126/science.275.5300.657 / Science / Sequential optimization strategy yields high-affinity zinc finger proteins for diverse DNA target sites by Greisman (1997)
10.1073/pnas.93.24.13577 / Proc. Natl Acad. Sci. USA / Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator by Houbaviy (1996)
10.1093/nar/23.21.4457 / Nucl. Acids Res. / DNA binding sites for the transcriptional activator/repressor YY1 by Hyde-DeRuyscher (1995)
10.1002/j.1460-2075.1992.tb05552.x / EMBO J. / Determination of the base recognition positions of zinc fingers from sequence analysis by Jacobs (1992)
10.1021/bi00185a004 / Biochemistry / In vitro selection of zinc fingers with altered DNA-binding specificity by Jamieson (1994)
10.1073/pnas.93.23.12834 / Proc. Natl Acad. Sci. USA / A zinc finger directory for high-affinity DNA recognition by Jamieson (1996)
10.1006/jmbi.1994.0468 / J. Mol. Biol. / Serine at position 2 in the DNA recognition helix of a Cys2-His2 zinc finger peptide is not, in general, responsible for base recognition by Kim (1995)
10.1038/nsb1196-940 / Nature Struct. Biol. / A 2.2 Å resolution crystal structure of a designed zinc finger protein bound to DNA by Kim (1996)
10.1073/pnas.95.6.2938 / Proc. Natl Acad. Sci. USA / Differing roles for zinc fingers in DNA recognition by Nolte (1998)
10.1146/annurev.bi.61.070192.005201 / Annu. Rev. Biochem. / Transcription factors by Pabo (1992)
10.1126/science.2028256 / Science / Zinc finger-DNA recognition by Pavletich (1991)
10.1126/science.8378770 / Science / Crystal structure of a five-finger GLI-DNA complex by Pavletich (1993)
10.1126/science.8303274 / Science / Zinc finger phage by Rebar (1994)
10.1128/MCB.15.4.2275 / Mol. Cell. Biol. / DNA-binding specificity of NGFI-A and related zinc finger transcription factors by Swirnoff (1995)
10.1073/pnas.92.2.344 / Proc. Natl Acad. Sci. USA / Building zinc fingers by selection by Wu (1995)
10.1006/jmbi.1997.1291 / J. Mol. Biol. / Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence by Wuttke (1997)
10.1128/MCB.16.8.4024 / Mol. Cell. Biol. / Gfi-1 encodes a nuclear zinc finger protein that binds DNA and functions as a transcriptional repressor by Zweidler-Mckay (1996)

Dates

Type	When
Created	22 years, 10 months ago (Oct. 7, 2002, 3:22 a.m.)
Deposited	5 years, 8 months ago (Dec. 17, 2019, 7:48 p.m.)
Indexed	5 months, 1 week ago (March 19, 2025, 10:41 a.m.)
Issued	26 years, 7 months ago (Feb. 1, 1999)
Published	26 years, 7 months ago (Feb. 1, 1999)
Published Print	26 years, 7 months ago (Feb. 1, 1999)

Funders 0

None

BibTeX

@article{Wolfe_1999, title={Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code 1 1Edited by P. E. Wright}, volume={285}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.1998.2421}, DOI={10.1006/jmbi.1998.2421}, number={5}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Wolfe, Scot A. and Greisman, Harvey A. and Ramm, Elizabeth I. and Pabo, Carl O.}, year={1999}, month=feb, pages={1917–1934} }

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