Crossref
journal-article
Elsevier BV
Journal of Molecular Biology (78)
References
70
Referenced
159
10.1126/science.3187531
/ Science / Recognition of a DNA operator by the repressor of phage 434 by Aggarwal (1988)10.1006/jmbi.1996.0758
/ J. Mol. Biol. / Inter-residue potential in globular proteins and the dominance of highly specific hydrophilic interaction at close separation by Bahar (1997)10.1016/0022-2836(92)90690-L
/ J. Mol. Biol. / Refined 1. 8 Å crystal structure of the lambda repressor-operator complex by Beamer (1992)10.1006/jmbi.1996.0673
/ J. Mol. Biol. / Crystallographic evidence for Cα-H…O C hydrogen bonds in a collagen triple helix by Bella (1996)10.1073/pnas.93.22.12116
/ Proc. Natl Acad. Sci. USA / Inter-strand C-H…O hydrogen bonds stabilizing four-stranded intercalated molecules by Berger (1996)10.1016/S0006-3495(92)81649-1
/ Biophys. J. / The nucleic acid database by Berman (1992)10.1002/j.1460-2075.1994.tb06708.x
/ EMBO J. / Structure of PvuII endonuclease with cognate DNA by Cheng (1994)10.1126/science.8023157
/ Science / Crystal structure of a p53 tumor suppressor-DNA complex by Cho (1994)10.1073/pnas.91.23.11168
/ Proc. Natl Acad. Sci. USA / Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions by Choo (1994)10.1038/364412a0
/ Nature / Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5 by Clark (1993)10.1021/ja00124a002
/ J. Am. Chem. Soc. / A second generation force field for the simulation of proteins, nucleic acids and organic molecules by Cornell (1995)10.1006/jmbi.1995.0492
/ J. Mol. Biol. / The occurrence of C-H…O hydrogen bonds in proteins by Derewenda (1995)10.1021/ar00010a002
/ Acc. Chem. Res. / The C-H…O hydrogen bonds in crystals by Desiraju (1991)10.1101/gad.8.8.970
/ Genes Dev. / Crystal structure of transcription factor E47 by Ellenberger (1994)10.1016/S0092-8674(05)80070-4
/ Cell / The GCN4 basic region leucine zipper binds DNA as a dimer of uninterupted α helices by Ellenberger (1997)10.1016/S0969-2126(96)00125-6
/ Structure / Zif268 protein-DNA complex refined at 1.6 Å by Elrod-Erickson (1996)10.1038/366483a0
/ Nature / The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition by Fairall (1993)10.1126/science.8278807
/ Science / Hin recombinase bound to DNA by Feng (1994)10.1038/363038a0
/ Nature / Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain by Ferré-D’ Amaré (1993)10.1002/j.1460-2075.1994.tb06247.x
/ EMBO J / Structure and function of the b/HLH/Z domain of USF by Ferré-D’ Amaré (1994)10.1038/373257a0
/ Nature / Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA by Glover (1995)10.1038/359505a0
/ Nature / Crystal structure at 1.7 Å of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target by Hegde (1992)10.1002/j.1460-2075.1995.tb00318.x
/ EMBO J. / Structure of the Even-skipped homeodomain complexed to AT-rich DNA by Hirsch (1995)10.1006/jmbi.1993.1217
/ J. Mol. Biol. / Sequence-dependent DNA structure. The role of base stacking interactions by Hunter (1993){'key': '10.1006/jmbi.1998.1660_BIB25', 'series-title': 'Hydrogen Bonding in Biological Structures', 'first-page': '111', 'author': 'Jeffrey', 'year': '1991'}
/ Hydrogen Bonding in Biological Structures by Jeffrey (1991)10.1038/nsb0994-638
/ Nature Struct. Biol. / 1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG by Kim (1994)10.1126/science.2399465
/ Science / Refinement of EcoRI endonuclease crystal structure by Kim (1990)10.1038/365512a0
/ Nature / Crystal structure of a yeast TBP/TATA-box complex by Kim (1993)10.1016/0092-8674(90)90453-L
/ Cell / Crystal structure of an engrailed homeodomain-DNA complex at 2. 8 Å resolution by Kissinger (1990)10.1016/0092-8674(94)90231-3
/ Cell / Crystal structure of the Oct-1 POU domain bound to an octamer site by Klemm (1994)10.1006/jmbi.1993.1490
/ J. Mol. Biol. / The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility by Konig (1993)10.1021/bi00002a036
/ Biochemistry / Mg2+ binding to the active site of EcoRV endonuclease by Kostrewa (1995)10.1038/366178a0
/ Nature / Tandem binding in crystals of a trp repressor/operator half-site complex by Lawson (1993)10.1126/science.270.5234.262
/ Science / Crystal structure of the MATa1/MAT α2 homeodomain heterodimer bound to DNA by Li (1995)10.1038/352497a0
/ Nature / Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA by Luisi (1991)10.1093/nar/23.22.4707
/ Nucl. Acids Res. / Consistencies of individual DNA base-amino acid interactions in structures and sequences by Lustig (1995)10.1016/0092-8674(94)90159-7
/ Cell / Crystal structure of MyoD bHLH domain-DNA complex by Ma (1994)10.1006/jmbi.1995.0559
/ J. Mol. Biol. / Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes by Mandel-Gutfreund (1995)10.1038/356408a0
/ Nature / DNA recognition by GAL4 by Marmorstein (1992)10.1101/gad.8.20.2504
/ Genes Dev. / Crystal structure of a PPR1-DNA complex by Marmorstein (1994)10.1021/j100589a006
/ J. Phys. Chem. / Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occuring amino acids by Momany (1975)10.1016/0022-2836(91)90568-Q
/ J. Mol. Biol. / The phage 434 Cro/Or1 complex at 2. 5 Å resolution by Mondragon (1991)10.1038/373311a0
/ Nature / Structure of the NF-κb p50 homodimer bound to DNA by Muller (1995)10.1073/pnas.93.10.4862
/ Proc. Natl Acad. Sci. USA / Crystal structure of a human TATA box-binding protein/TATA element complex by Nikolov (1996)10.1080/07391102.1997.10508169
/ J. Biomol. Struct. Dynam. / Ab Initio quantum mechanics analysis of imidazole C-H…O water hydrogen bonding and a molecular mechanics forcefield correction by Ornstein (1997)10.1038/335321a0
/ Nature / Crystal structure of trp repressor/operator complex at atomic resolution by Otwinowski (1988)10.1006/jmbi.1996.0409
/ J. Mol. Biol. / Structure of the CAP-DNA complex at 2.5 Å resolution by Parkinson (1996){'key': '10.1006/jmbi.1998.1660_BIB48', 'series-title': 'The Nature of the Chemical Bond', 'author': 'Pauling', 'year': '1960'}
/ The Nature of the Chemical Bond by Pauling (1960)10.1126/science.8378770
/ Science / Crystal structure of a five-finger GLI-DNA complex by Pavletich (1993)10.1016/0022-2836(90)90019-I
/ J. Mol. Biol. / Atomic charges for DNA constituents derived from single-crystal X-ray diffraction data by Pearlman (1990)10.1073/pnas.91.13.6161
/ Proc. Natl Acad. Sci. USA / Formation of base triplets by non-Watson-Crick bonds mediates homologous recognition in RecA recombination filaments by Rao (1994)10.1038/367754a0
/ Nature / DNA recognition by beta-sheets in the Arc repressor-operator crystal structure by Raumann (1994)10.1002/bip.360100707
/ Biopolymers / Stereochemistry of nucleic acids and polynucleotides. III. Elecronic charge distribution by Renugopalakrishnan (1971)10.1016/0969-2126(93)90012-6
/ Structure / The complex between phage 434 repressor DNA-binding domain and operator site OR3 by Rodgers (1993)10.1126/science.7973627
/ Science / Crystal structure of LacI member, PurR, bound to DNA by Schumacher (1994)10.1016/0092-8674(93)90390-C
/ Cell / The crystal structure of the estrogen receptor DNA-binding domain bound to DNA by Schwabe (1993)10.1073/pnas.73.3.804
/ Proc. Natl Acad. Sci. USA / Sequence-specific recognition of double helical nucleic acids by proteins by Seeman (1976)10.1006/jmbi.1993.1434
/ J. Mol. Biol. / The phage 434 OR2/R1-69 complex at 2.5 Å resolution by Shimon (1993)10.1038/359387a0
/ Nature / Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by beta-strands by Somers (1992)10.1080/07391102.1996.10508935
/ J. Biomol. Struct. Dynam. / Hydrogen bonding and stacking of DNA bases by Sponer (1996)10.1016/0141-8130(94)90003-5
/ Int. J. Biol. Macromol. / Close mutual contacts of the amino groups in DNA by Sponer (1994)10.1038/195068a0
/ Nature / The C-H…O hydrogen bond in crystals by Sutor (1962)10.1016/S0969-2126(00)00033-2
/ Structure / A framework for the DNA-protein recognition code of the probe helix in transcription factors by Suzuki (1994)10.1021/ja00383a012
/ J. Am. Chem. Soc. / Crystallographic evidence for the existence of C-H…O, C-H… N, and C-H…Cl hydrogen bonds by Taylor (1982)10.1038/nsb0196-24
/ Nature Struct. Biol. / The structure of r(UUCGCG) has a 5′-UU-overhang exhibiting Hoogsteen-like trans U. U base pairs by Wahl (1996){'key': '10.1006/jmbi.1998.1660_BIB66', 'first-page': '97', 'article-title': 'C-H…O hydrogen bonding in biology', 'volume': '22', 'author': 'Wahl', 'year': '1997', 'journal-title': 'TIBS'}
/ TIBS / C-H…O hydrogen bonding in biology by Wahl (1997)10.1016/0092-8674(95)90468-9
/ Cell / High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA by Wilson (1995)10.1016/0092-8674(91)90526-5
/ Cell / Crystal structure of a MAT α2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions by Wolberger (1991)10.1016/0092-8674(95)90518-9
/ Cell / Crystal structure of a paired domain-DNA complex at 2.5 Å resolution reveals structural basis for Pax developmental mutations by Xu (1995)10.1006/jmbi.1994.1362
/ J. Mol. Biol. / A parallel DNA triplex as a model for the intermediate in homologous recombination by Zhurkin (1994)
Dates
Type | When |
---|---|
Created | 22 years, 11 months ago (Sept. 18, 2002, 3:24 p.m.) |
Deposited | 5 years, 8 months ago (Dec. 16, 2019, 12:49 a.m.) |
Indexed | 1 week, 6 days ago (Aug. 20, 2025, 8:25 a.m.) |
Issued | 27 years, 5 months ago (April 1, 1998) |
Published | 27 years, 5 months ago (April 1, 1998) |
Published Print | 27 years, 5 months ago (April 1, 1998) |
@article{Mandel_Gutfreund_1998, title={A role for CH…O interactions in protein-DNA recognition}, volume={277}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.1998.1660}, DOI={10.1006/jmbi.1998.1660}, number={5}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Mandel-Gutfreund, Yael and Margalit, Hanah and Jernigan, Robert L and Zhurkin, Victor B}, year={1998}, month=apr, pages={1129–1140} }