DOI: 10.1006/jmbi.1996.0758. Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig

Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig

10.1006/jmbi.1996.0758

Crossref journal-article

Elsevier BV

Journal of Molecular Biology (78)

Authors 2

I. Bahar (first)
R.L. Jernigan (additional)

References 49 Referenced 242

{'key': '10.1006/jmbi.1996.0758_BIB1', 'series-title': 'Crystallographic Databases-Information Content Software Systems, Scientific Applications', 'first-page': '107', 'article-title': 'The protein databank', 'author': 'Abola', 'year': '1987'} / Crystallographic Databases-Information Content Software Systems, Scientific Applications / The protein databank by Abola (1987)
10.1016/S1359-0278(96)00051-X / Folding Des. / Coordination geometry of non-bonded residues in globular proteins by Bahar (1996)
{'key': '10.1006/jmbi.1996.0758_BIB3', 'series-title': 'Statistical Thermodynamics for Chemists and Biochemists', 'author': 'Ben-Naim', 'year': '1992'} / Statistical Thermodynamics for Chemists and Biochemists by Ben-Naim (1992)
10.1016/S0022-2836(77)80200-3 / J. Mol. Biol. / The protein databank by Bernstein (1977)
10.1126/science.1853201 / Science / A method to identify protein sequences that fold into a known 3-dimensional structure by Bowie (1991)
10.1021/ja01091a003 / J. Am. Chem. Soc. / The configuration of random polypeptide theory by Brant (1965)
10.1002/prot.340180306 / Proteins: Struct. Funct. Genet. / An improved pair potential to recognize native protein folds by Brauer (1994)
10.1002/prot.340160110 / Proteins: Struct. Funct. Genet. / An empirical energy function for threading protein sequence through the folding motif by Bryant (1993)
10.1016/S0065-3233(08)60376-9 / Advan. Protein Chem. / Weakly polar interactions in proteins by Burley (1988)
10.1016/0022-2836(92)90556-Y / J. Mol. Biol. / Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds by Casari (1992)
10.1016/0022-2836(87)90189-6 / J. Mol. Biol. / Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins by Cornette (1987)
10.1021/bi00465a020 / Biochemistry / Conformations of folded proteins in restricted spaces by Covell (1990)
10.1111/j.1399-3011.1985.tb02203.x / Int. J. Pept. Protein Res. / Sidechain and backbone potential functions for conformational analysis of proteins by Crippen (1985)
10.1006/jmbi.1994.1022 / J. Mol. Biol. / Planar stacking interactions of arginine and aromatic side-chains in proteins by Flocco (1994)
10.1073/pnas.89.24.12098 / Proc. Natl Acad. Sci. USA / Sequence-structure matching in globular proteins. Applications to supersecondary and tertiary structure determination by Godzik (1992)
10.1002/pro.5560041016 / Protein Sci. / Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets by Godzik (1995)
10.1073/pnas.89.14.6614 / Proc. Natl Acad. Sci. USA / Effects of compact volume and chain stiffness on the conformations of native proteins by Hao (1992)
10.1016/S0022-2836(05)80068-3 / J. Mol. Biol. / Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force by Hendlich (1990)
10.1002/pro.5560030317 / Protein Sci. / Enlarged representative set of protein structures by Hobohm (1994)
10.1002/pro.5560010313 / Protein Sci. / Exhaustive matching of representative protein data sets by Hobohm (1992)
10.1016/0959-440X(92)90154-Y / Curr. Opin. Struct. Biol. / Protein folds by Jernigan (1992)
10.1016/S0959-440X(96)80075-3 / Curr. Opin. Struct. Biol. / Simple empirical potentials derived from structures and their use in protein simulations by Jernigan (1996)
10.1038/358086a0 / Nature / A new approach to protein fold recognition by Jones (1992)
10.1006/jmbi.1994.1109 / J. Mol. Biol. / Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches by Kocher (1994)
10.1016/0022-2836(76)90004-8 / J. Mol. Biol. / A simplified representation of protein conformations for rapid simulation of protein folding by Levitt (1976)
10.1016/0022-2836(88)90471-8 / J. Mol. Biol. / Aromatic rings act as hydrogen bond acceptors by Levitt (1988)
10.1038/253694a0 / Nature / Computer simulation of protein folding by Levitt (1975)
10.1016/0022-2836(92)90228-C / J. Mol. Biol. / Contact potential that recognizes the correct folding of globular proteins by Maiorov (1992)
10.1021/ma60078a013 / Macromolecules / Empirical studies of hydrophobicity. 1. Effect of protein size and the hydrophobic behavior of amino acids by Meirovitch (1980)
10.1006/jmbi.1994.1370 / J. Mol. Biol. / Amino-aromatic interactions in proteins by Mitchell (1994)
10.1021/ma00145a039 / Macromolecules / Estimation of effective inter-residue contact energies from protein crystal structures by Miyazawa (1985)
10.1006/jmbi.1996.0114 / J. Mol. Biol. / Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading by Miyazawa (1996)
10.1006/jmbi.1995.0195 / J. Mol. Biol. / Computer modeling of protein folding by Monge (1995)
{'key': '10.1006/jmbi.1996.0758_BIB34', 'first-page': '2211', 'article-title': 'The solubility of amino acids and two glycine peptide in aqueous ethanol and dioxane solutions. Establishment of hydrophobicity scales', 'volume': '246', 'author': 'Nozaki', 'year': '1971', 'journal-title': 'J. Biol. Chem.'} / J. Biol. Chem. / The solubility of amino acids and two glycine peptide in aqueous ethanol and dioxane solutions. Establishment of hydrophobicity scales by Nozaki (1971)
10.1006/jmbi.1996.0256 / J. Mol. Biol. / Energy functions that discriminate X-ray and near-native folds from well-constructed decoys by Park (1996)
10.1016/0022-5193(80)90108-3 / J. Theor. Biol. / Spatial assignment of amino acid residues in globular proteins by Prabhakaran (1980)
10.1126/science.4023714 / Science / Hydrophobicity of amino acid residues in globular proteins by Rose (1985)
10.1006/jmbi.1993.1413 / J. Mol. Biol. / Prediction of protein secondary structure at better than 70% accuracy by Rost (1993)
10.1016/S0022-2836(05)80269-4 / J. Mol. Biol. / Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins by Sippl (1990)
10.1002/pro.5560010509 / Protein Sci. / Assembly of polypeptide and protein backbone conformation from low energy ensembles of short fragments by Sippl (1992)
10.1002/pro.5560020508 / Protein Sci. / Reduced representation model of protein structure prediction by Sun (1993)
10.1016/S0006-3495(92)81793-9 / Biophys. J. / Protein structure prediction based on statistical potential by Sun (1992)
10.1006/jmbi.1996.0175 / J. Mol. Biol. / Statistical potentials extracted from protein structures by Thomas (1996)
10.1002/prot.340180308 / Proteins: Struct. Funct. Genet. / A simplified amino acid potential for use in structure predictions of proteins by Wallqvist (1994)
10.1002/pro.5560040923 / Protein Sci / A preference-based free energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design by Wallqvist (1995)
10.1073/pnas.92.3.709 / Proc. Natl Acad. Sci. USA / Discriminating compact nonnative structures from the native structure of globular proteins by Wang (1995)
10.1002/pro.5560040714 / Protein Sci. / A new computational model for protein folding based on atomic solvation by Wang (1995)
10.1002/prot.340060208 / Proteins: Struct. Funct. Genet. / A computer model to dynamically simulate protein folding by Wilson (1989)
10.1021/bi00507a030 / Biochemistry / Affinities of amino acid sidechains for solvent water by Wolfenden (1981)

Dates

Type	When
Created	22 years, 11 months ago (Sept. 18, 2002, 11:24 a.m.)
Deposited	6 years, 3 months ago (May 8, 2019, 11:24 p.m.)
Indexed	1 month ago (July 23, 2025, 8:26 a.m.)
Issued	28 years, 6 months ago (Feb. 1, 1997)
Published	28 years, 6 months ago (Feb. 1, 1997)
Published Print	28 years, 6 months ago (Feb. 1, 1997)

Funders 0

None

BibTeX

@article{Bahar_1997, title={Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig}, volume={266}, ISSN={0022-2836}, url={http://dx.doi.org/10.1006/jmbi.1996.0758}, DOI={10.1006/jmbi.1996.0758}, number={1}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Bahar, I. and Jernigan, R.L.}, year={1997}, month=feb, pages={195–214} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        7,
        23
      ]
    ],
    "date-time": "2025-07-23T12:26:13Z",
    "timestamp": 1753273573157
  },
  "reference-count": 49,
  "publisher": "Elsevier BV",
  "issue": "1",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            1997,
            2,
            1
          ]
        ],
        "date-time": "1997-02-01T00:00:00Z",
        "timestamp": 854755200000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        1997,
        2
      ]
    ]
  },
  "DOI": "10.1006/jmbi.1996.0758",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2002,
        9,
        18
      ]
    ],
    "date-time": "2002-09-18T15:24:54Z",
    "timestamp": 1032362694000
  },
  "page": "195-214",
  "source": "Crossref",
  "is-referenced-by-count": 242,
  "title": "Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig",
  "prefix": "10.1006",
  "volume": "266",
  "author": [
    {
      "given": "I.",
      "family": "Bahar",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "R.L.",
      "family": "Jernigan",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1006/jmbi.1996.0758_BIB1",
      "series-title": "Crystallographic Databases-Information Content Software Systems, Scientific Applications",
      "first-page": "107",
      "article-title": "The protein databank",
      "author": "Abola",
      "year": "1987"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB2",
      "doi-asserted-by": "crossref",
      "first-page": "357",
      "DOI": "10.1016/S1359-0278(96)00051-X",
      "article-title": "Coordination geometry of non-bonded residues in globular proteins",
      "volume": "1",
      "author": "Bahar",
      "year": "1996",
      "journal-title": "Folding Des."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB3",
      "series-title": "Statistical Thermodynamics for Chemists and Biochemists",
      "author": "Ben-Naim",
      "year": "1992"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB4",
      "doi-asserted-by": "crossref",
      "first-page": "535",
      "DOI": "10.1016/S0022-2836(77)80200-3",
      "article-title": "The protein databank",
      "volume": "112",
      "author": "Bernstein",
      "year": "1977",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB5",
      "doi-asserted-by": "crossref",
      "first-page": "164",
      "DOI": "10.1126/science.1853201",
      "article-title": "A method to identify protein sequences that fold into a known 3-dimensional structure",
      "volume": "253",
      "author": "Bowie",
      "year": "1991",
      "journal-title": "Science"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB6",
      "doi-asserted-by": "crossref",
      "first-page": "2791",
      "DOI": "10.1021/ja01091a003",
      "article-title": "The configuration of random polypeptide theory",
      "volume": "87",
      "author": "Brant",
      "year": "1965",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB7",
      "doi-asserted-by": "crossref",
      "first-page": "254",
      "DOI": "10.1002/prot.340180306",
      "article-title": "An improved pair potential to recognize native protein folds",
      "volume": "18",
      "author": "Brauer",
      "year": "1994",
      "journal-title": "Proteins: Struct. Funct. Genet."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB8",
      "doi-asserted-by": "crossref",
      "first-page": "92",
      "DOI": "10.1002/prot.340160110",
      "article-title": "An empirical energy function for threading protein sequence through the folding motif",
      "volume": "16",
      "author": "Bryant",
      "year": "1993",
      "journal-title": "Proteins: Struct. Funct. Genet."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB9",
      "doi-asserted-by": "crossref",
      "first-page": "125",
      "DOI": "10.1016/S0065-3233(08)60376-9",
      "article-title": "Weakly polar interactions in proteins",
      "volume": "39",
      "author": "Burley",
      "year": "1988",
      "journal-title": "Advan. Protein Chem."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB10",
      "doi-asserted-by": "crossref",
      "first-page": "725",
      "DOI": "10.1016/0022-2836(92)90556-Y",
      "article-title": "Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds",
      "volume": "244",
      "author": "Casari",
      "year": "1992",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB11",
      "doi-asserted-by": "crossref",
      "first-page": "659",
      "DOI": "10.1016/0022-2836(87)90189-6",
      "article-title": "Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins",
      "volume": "195",
      "author": "Cornette",
      "year": "1987",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB12",
      "doi-asserted-by": "crossref",
      "first-page": "3287",
      "DOI": "10.1021/bi00465a020",
      "article-title": "Conformations of folded proteins in restricted spaces",
      "volume": "29",
      "author": "Covell",
      "year": "1990",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB13",
      "doi-asserted-by": "crossref",
      "first-page": "487",
      "DOI": "10.1111/j.1399-3011.1985.tb02203.x",
      "article-title": "Sidechain and backbone potential functions for conformational analysis of proteins",
      "volume": "25",
      "author": "Crippen",
      "year": "1985",
      "journal-title": "Int. J. Pept. Protein Res."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB14",
      "doi-asserted-by": "crossref",
      "first-page": "709",
      "DOI": "10.1006/jmbi.1994.1022",
      "article-title": "Planar stacking interactions of arginine and aromatic side-chains in proteins",
      "volume": "235",
      "author": "Flocco",
      "year": "1994",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB15",
      "doi-asserted-by": "crossref",
      "first-page": "98",
      "DOI": "10.1073/pnas.89.24.12098",
      "article-title": "Sequence-structure matching in globular proteins. Applications to supersecondary and tertiary structure determination",
      "volume": "89",
      "author": "Godzik",
      "year": "1992",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB16",
      "doi-asserted-by": "crossref",
      "first-page": "2107",
      "DOI": "10.1002/pro.5560041016",
      "article-title": "Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets",
      "volume": "4",
      "author": "Godzik",
      "year": "1995",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB17",
      "doi-asserted-by": "crossref",
      "first-page": "6614",
      "DOI": "10.1073/pnas.89.14.6614",
      "article-title": "Effects of compact volume and chain stiffness on the conformations of native proteins",
      "volume": "89",
      "author": "Hao",
      "year": "1992",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB18",
      "doi-asserted-by": "crossref",
      "first-page": "167",
      "DOI": "10.1016/S0022-2836(05)80068-3",
      "article-title": "Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force",
      "volume": "216",
      "author": "Hendlich",
      "year": "1990",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB19",
      "doi-asserted-by": "crossref",
      "first-page": "522",
      "DOI": "10.1002/pro.5560030317",
      "article-title": "Enlarged representative set of protein structures",
      "volume": "3",
      "author": "Hobohm",
      "year": "1994",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB20",
      "doi-asserted-by": "crossref",
      "first-page": "409",
      "DOI": "10.1002/pro.5560010313",
      "article-title": "Exhaustive matching of representative protein data sets",
      "volume": "1",
      "author": "Hobohm",
      "year": "1992",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB21",
      "doi-asserted-by": "crossref",
      "first-page": "248",
      "DOI": "10.1016/0959-440X(92)90154-Y",
      "article-title": "Protein folds",
      "volume": "2",
      "author": "Jernigan",
      "year": "1992",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB22",
      "doi-asserted-by": "crossref",
      "first-page": "195",
      "DOI": "10.1016/S0959-440X(96)80075-3",
      "article-title": "Simple empirical potentials derived from structures and their use in protein simulations",
      "volume": "6",
      "author": "Jernigan",
      "year": "1996",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB23",
      "doi-asserted-by": "crossref",
      "first-page": "86",
      "DOI": "10.1038/358086a0",
      "article-title": "A new approach to protein fold recognition",
      "volume": "358",
      "author": "Jones",
      "year": "1992",
      "journal-title": "Nature"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB24",
      "doi-asserted-by": "crossref",
      "first-page": "1598",
      "DOI": "10.1006/jmbi.1994.1109",
      "article-title": "Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches",
      "volume": "235",
      "author": "Kocher",
      "year": "1994",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB25",
      "doi-asserted-by": "crossref",
      "first-page": "59",
      "DOI": "10.1016/0022-2836(76)90004-8",
      "article-title": "A simplified representation of protein conformations for rapid simulation of protein folding",
      "volume": "104",
      "author": "Levitt",
      "year": "1976",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB26",
      "doi-asserted-by": "crossref",
      "first-page": "751",
      "DOI": "10.1016/0022-2836(88)90471-8",
      "article-title": "Aromatic rings act as hydrogen bond acceptors",
      "volume": "201",
      "author": "Levitt",
      "year": "1988",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB27",
      "doi-asserted-by": "crossref",
      "first-page": "694",
      "DOI": "10.1038/253694a0",
      "article-title": "Computer simulation of protein folding",
      "volume": "253",
      "author": "Levitt",
      "year": "1975",
      "journal-title": "Nature"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB28",
      "doi-asserted-by": "crossref",
      "first-page": "876",
      "DOI": "10.1016/0022-2836(92)90228-C",
      "article-title": "Contact potential that recognizes the correct folding of globular proteins",
      "volume": "227",
      "author": "Maiorov",
      "year": "1992",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB29",
      "doi-asserted-by": "crossref",
      "first-page": "1398",
      "DOI": "10.1021/ma60078a013",
      "article-title": "Empirical studies of hydrophobicity. 1. Effect of protein size and the hydrophobic behavior of amino acids",
      "volume": "13",
      "author": "Meirovitch",
      "year": "1980",
      "journal-title": "Macromolecules"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB30",
      "doi-asserted-by": "crossref",
      "first-page": "315",
      "DOI": "10.1006/jmbi.1994.1370",
      "article-title": "Amino-aromatic interactions in proteins",
      "volume": "239",
      "author": "Mitchell",
      "year": "1994",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB31",
      "doi-asserted-by": "crossref",
      "first-page": "534",
      "DOI": "10.1021/ma00145a039",
      "article-title": "Estimation of effective inter-residue contact energies from protein crystal structures",
      "volume": "18",
      "author": "Miyazawa",
      "year": "1985",
      "journal-title": "Macromolecules"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB32",
      "doi-asserted-by": "crossref",
      "first-page": "623",
      "DOI": "10.1006/jmbi.1996.0114",
      "article-title": "Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading",
      "volume": "256",
      "author": "Miyazawa",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB33",
      "doi-asserted-by": "crossref",
      "first-page": "995",
      "DOI": "10.1006/jmbi.1995.0195",
      "article-title": "Computer modeling of protein folding",
      "volume": "247",
      "author": "Monge",
      "year": "1995",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB34",
      "first-page": "2211",
      "article-title": "The solubility of amino acids and two glycine peptide in aqueous ethanol and dioxane solutions. Establishment of hydrophobicity scales",
      "volume": "246",
      "author": "Nozaki",
      "year": "1971",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB35",
      "doi-asserted-by": "crossref",
      "first-page": "367",
      "DOI": "10.1006/jmbi.1996.0256",
      "article-title": "Energy functions that discriminate X-ray and near-native folds from well-constructed decoys",
      "volume": "258",
      "author": "Park",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB36",
      "doi-asserted-by": "crossref",
      "first-page": "623",
      "DOI": "10.1016/0022-5193(80)90108-3",
      "article-title": "Spatial assignment of amino acid residues in globular proteins",
      "volume": "87",
      "author": "Prabhakaran",
      "year": "1980",
      "journal-title": "J. Theor. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB37",
      "doi-asserted-by": "crossref",
      "first-page": "834",
      "DOI": "10.1126/science.4023714",
      "article-title": "Hydrophobicity of amino acid residues in globular proteins",
      "volume": "229",
      "author": "Rose",
      "year": "1985",
      "journal-title": "Science"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB38",
      "doi-asserted-by": "crossref",
      "first-page": "584",
      "DOI": "10.1006/jmbi.1993.1413",
      "article-title": "Prediction of protein secondary structure at better than 70% accuracy",
      "volume": "232",
      "author": "Rost",
      "year": "1993",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB39",
      "doi-asserted-by": "crossref",
      "first-page": "859",
      "DOI": "10.1016/S0022-2836(05)80269-4",
      "article-title": "Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins",
      "volume": "213",
      "author": "Sippl",
      "year": "1990",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB40",
      "doi-asserted-by": "crossref",
      "first-page": "625",
      "DOI": "10.1002/pro.5560010509",
      "article-title": "Assembly of polypeptide and protein backbone conformation from low energy ensembles of short fragments",
      "volume": "1",
      "author": "Sippl",
      "year": "1992",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB41",
      "doi-asserted-by": "crossref",
      "first-page": "762",
      "DOI": "10.1002/pro.5560020508",
      "article-title": "Reduced representation model of protein structure prediction",
      "volume": "2",
      "author": "Sun",
      "year": "1993",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB42",
      "doi-asserted-by": "crossref",
      "first-page": "104",
      "DOI": "10.1016/S0006-3495(92)81793-9",
      "article-title": "Protein structure prediction based on statistical potential",
      "volume": "62",
      "author": "Sun",
      "year": "1992",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB43",
      "doi-asserted-by": "crossref",
      "first-page": "457",
      "DOI": "10.1006/jmbi.1996.0175",
      "article-title": "Statistical potentials extracted from protein structures",
      "volume": "257",
      "author": "Thomas",
      "year": "1996",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB44",
      "doi-asserted-by": "crossref",
      "first-page": "267",
      "DOI": "10.1002/prot.340180308",
      "article-title": "A simplified amino acid potential for use in structure predictions of proteins",
      "volume": "18",
      "author": "Wallqvist",
      "year": "1994",
      "journal-title": "Proteins: Struct. Funct. Genet."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB45",
      "doi-asserted-by": "crossref",
      "first-page": "1881",
      "DOI": "10.1002/pro.5560040923",
      "article-title": "A preference-based free energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design",
      "volume": "4",
      "author": "Wallqvist",
      "year": "1995",
      "journal-title": "Protein Sci"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB46",
      "doi-asserted-by": "crossref",
      "first-page": "709",
      "DOI": "10.1073/pnas.92.3.709",
      "article-title": "Discriminating compact nonnative structures from the native structure of globular proteins",
      "volume": "92",
      "author": "Wang",
      "year": "1995",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB47",
      "doi-asserted-by": "crossref",
      "first-page": "1402",
      "DOI": "10.1002/pro.5560040714",
      "article-title": "A new computational model for protein folding based on atomic solvation",
      "volume": "4",
      "author": "Wang",
      "year": "1995",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB48",
      "doi-asserted-by": "crossref",
      "first-page": "193",
      "DOI": "10.1002/prot.340060208",
      "article-title": "A computer model to dynamically simulate protein folding",
      "volume": "6",
      "author": "Wilson",
      "year": "1989",
      "journal-title": "Proteins: Struct. Funct. Genet."
    },
    {
      "key": "10.1006/jmbi.1996.0758_BIB49",
      "doi-asserted-by": "crossref",
      "first-page": "849",
      "DOI": "10.1021/bi00507a030",
      "article-title": "Affinities of amino acid sidechains for solvent water",
      "volume": "20",
      "author": "Wolfenden",
      "year": "1981",
      "journal-title": "Biochemistry"
    }
  ],
  "container-title": "Journal of Molecular Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0022283696907585?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0022283696907585?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2019,
        5,
        9
      ]
    ],
    "date-time": "2019-05-09T03:24:48Z",
    "timestamp": 1557372288000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S0022283696907585"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        1997,
        2
      ]
    ]
  },
  "references-count": 49,
  "journal-issue": {
    "issue": "1",
    "published-print": {
      "date-parts": [
        [
          1997,
          2
        ]
      ]
    }
  },
  "alternative-id": [
    "S0022283696907585"
  ],
  "URL": "http://dx.doi.org/10.1006/jmbi.1996.0758",
  "relation": {},
  "ISSN": [
    "0022-2836"
  ],
  "subject": [],
  "container-title-short": "Journal of Molecular Biology",
  "published": {
    "date-parts": [
      [
        1997,
        2
      ]
    ]
  }
}