DOI: 10.1006/dbio.2000.9941. Recovery of Developmentally Defined Gene Sets from High-Density cDNA Macroarrays

Recovery of Developmentally Defined Gene Sets from High-Density cDNA Macroarrays

10.1006/dbio.2000.9941

Crossref journal-article

Elsevier BV

Developmental Biology (78)

Bibliography

Rast, J. P., Amore, G., Calestani, C., Livi, C. B., Ransick, A., & Davidson, E. H. (2000). Recovery of Developmentally Defined Gene Sets from High-Density cDNA Macroarrays. Developmental Biology, 228(2), 270â286.

Authors 6

Jonathan P Rast (first)
Gabriele Amore (additional)
Cristina Calestani (additional)
Carolina B Livi (additional)
Andrew Ransick (additional)
Eric H Davidson (additional)

References 30 Referenced 80

10.1242/dev.124.22.4649 / Development / Green fluorescent protein in the sea urchin: New experimental approaches to transcriptional regulatory analysis in embryos and larvae by Arnone (1997)
10.1016/0076-6879(74)29033-5 / Methods Enzymol. / Analysis of repeating DNA sequences by reassociation by Britten (1974)
10.1038/4462 / Nat. Genet. / Exploring the new world of the genome with DNA microarrays by Brown (1999)
10.1016/S0076-6879(99)03015-3 / Methods Enzymol. / Construction and analysis of arrayed cDNA libraries by Clark (1999)
{'key': '10.1006/dbio.2000.9941_RF5', 'series-title': 'Gene Activity in Early Development', 'author': 'Davidson', 'year': '1986'} / Gene Activity in Early Development by Davidson (1986)
10.1016/0012-1606(82)90004-5 / Dev. Biol. / Developmental patterns of cytoplasmic transcript prevalence in sea urchin embryos by Flytzanis (1982)
10.1073/pnas.74.3.1020 / Proc. Natl. Acad. Sci. USA / Studies on nucleic acid reassociation kinetics: Rate of hybridization of excess RNA with DNA, compared to the rate of DNA renaturation by Galau (1977)
10.1016/0378-1119(83)90230-5 / Gene / A simple and very efficient method for generating cDNA libraries by Gubler (1983)
10.1093/nar/24.23.4832 / Nucleic Acids Res. / Directional random oligonucleotide primed (DROP) global amplification of cDNA: Its application to subtractive cDNA cloning by Hampson (1996)
10.1016/0012-1606(88)90174-1 / Dev. Biol. / Mosaic incorporation and regulated expression of an exogenous gene in the sea urchin embryo by Hough-Evans (1988)
10.1016/S0076-6879(99)03003-7 / Methods Enzymol. / Preparation of cDNA from single cells and subcellular regions by Kacharmina (1999)
10.1016/0012-1606(89)90306-0 / Dev. Biol. / The accumulation and translation of a spicule matrix protein mRNA during sea urchin embryo development by Killian (1989)
10.1021/bi00643a026 / Biochemistry / Room temperature method for increasing the rate of DNA reassociation by many thousandfold: The phenol emulsion reassociation technique by Kohne (1977)
10.1073/pnas.77.9.5317 / Proc. Natl. Acad. Sci. USA / Messenger RNA prevalence in sea urchin embryos measured with cloned cDNAs by Lasky (1980)
10.1016/0022-2836(86)90302-5 / J. Mol. Biol. / Activation of sea urchin actin genes during embryogenesis. Measurement of transcript accumulation from five different genes in Strongylocentrotus purpuratus by Lee (1986)
10.1242/dev.126.17.3857 / Development / EST analysis of gene expression in early cleavage-stage sea urchin embryos by Lee (1999)
10.1046/j.1440-169X.1999.413429.x / Dev. Growth Differ. / SM37, a skeletogenic gene of the sea urchin embryo linked to the SM50 gene by Lee (1999)
10.1038/4447 / Nat. Genet. / High density synthetic oligonucleotide arrays by Lipshutz (1999)
10.1242/dev.113.2.385 / Development / Differential stability of expression of similarly specified endogenous and exogenous genes in the sea urchin embryo by Livant (1991)
10.1016/0168-1656(94)90035-3 / J. Biotechnol. / Application of robotic technology to automated sequence fingerprint analysis by oligonucleotide hybridisation by Maier (1994)
10.1016/S0091-679X(08)60355-6 / Methods Cell Biol. / Embryo dissociation, cell isolation and cell reassociation by McClay (1986)
10.1016/0012-1606(85)90045-4 / Dev. Biol. / Introduction of cloned DNA into sea urchin egg cytoplasm: Replication and persistence during embryogenesis by McMahon (1985)
10.1016/0012-1606(91)90124-L / Dev. Biol. / Polyubiquitin RNA characteristics and conditional induction in sea urchin embryos by Nemer (1991)
10.1093/nar/19.1.182 / Nucleic Acids Res. / An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids by Nizetic (1991)
10.1006/dbio.1998.9177 / Dev. Biol. / Expression pattern of brachyury and Not in the sea urchin: Comparative implications for the origins of mesoderm in the basal deuterostomes by Peterson (1999)
10.1006/meth.1996.0104 / Methods: Companion Methods Enzymol. / Antisense RNA amplification: A linear amplification method for analyzing the mRNA population from single living cells by Phillips (1996)
10.1006/geno.1999.5852 / Genomics / Toward the gene catalogue of sea urchin development: The construction and analysis of an unfertilized egg cDNA library highly normalized by oligonucleotide fingerprinting by Poustka (1999)
10.1146/annurev.biochem.66.1.751 / Annu. Rev. Biochem. / Subtractive cloning: Past, present, and future by Sagerstrom (1997)
10.1093/nar/23.6.1087 / Nucleic Acids Res. / An improved PCR method for walking in uncloned genomic DNA by Siebert (1995)
10.1093/nar/16.22.10937 / Nucleic Acids Res. / A simple subtractive hybridization technique employing photoactivatable biotin and phenol extraction by Sive (1988)

Dates

Type	When
Created	22 years, 11 months ago (Sept. 16, 2002, 11:45 a.m.)
Deposited	4 years, 3 months ago (May 2, 2021, 10:30 p.m.)
Indexed	1 week, 1 day ago (Aug. 24, 2025, 6:56 p.m.)
Issued	24 years, 9 months ago (Dec. 1, 2000)
Published	24 years, 9 months ago (Dec. 1, 2000)
Published Print	24 years, 9 months ago (Dec. 1, 2000)

Funders 0

None

BibTeX

@article{Rast_2000, title={Recovery of Developmentally Defined Gene Sets from High-Density cDNA Macroarrays}, volume={228}, ISSN={0012-1606}, url={http://dx.doi.org/10.1006/dbio.2000.9941}, DOI={10.1006/dbio.2000.9941}, number={2}, journal={Developmental Biology}, publisher={Elsevier BV}, author={Rast, Jonathan P and Amore, Gabriele and Calestani, Cristina and Livi, Carolina B and Ransick, Andrew and Davidson, Eric H}, year={2000}, month=dec, pages={270–286} }

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